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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=transcript|length=1550bp
TccttttatcaattttattcaattttctttaaaaaagctttagTATTTTA
ATTGTATTTCAACTAGGATTAGAAACTAAGcaataatcaaaacaataata
atgaTACTATATCAATGAAACAATGCTGATTGATATAAACAGATTATTAA
AGGTCACTTCAGTATTGGTATTGGTAACTATATTGATGATCTCACCAGCA
ATGTCATTGCCTCAGCTCGTCATCAATACATGGCCATTACCTAATGCCAC
AGCCGCTGCTTTCAAAGCCTTGGAAAGAGGATCATTATTGGATGCTATTG
TTGATGGTTGTACTAATGCTGAAGAGGATCGTAAGATGACCTCAGTTGGT
TGGGGTGGTAGCCCTGCTGAGAATGGGGAAACTGCTTTGGACGCTTTGAT
CATTGATGGTGTTTCTCATAATATGGGGGCTGTTGGTAGTATGAAAAGAA
TCAAGAATGCAATCCGTGTTGCAAGGCATGTTCTTGAGAATACAAAACAC
ACTCTGCTGGTTGGTGAAGATGCAACCAAATTTGCAGTTGAAATGGGATT
CATAGAAGAAGATTTAACGTCTCAAGAATCAAAAGAACAATGGGAGAACT
GGAAAGCTGGGAAATGTCAACCTAATTTTTGGCAGAATGTTATACCTGAT
TCTACTATTTCATGTGGACCGTACCAACCAAAACCTTTCCAATTTGCAAC
AAAGGATACAGATCGTGAAGGGCTTATTACTGAGGATAATCATGATACTA
TTGGTATGATAGCCATTAATAGTCATGGTGATATTGCTGCTGGAACTTCC
ACTAATGGTGCAACTTTCAAAATTACTGGCAGAGTAGGAGATTCTCCAAT
CCCAGGGTCAGGAGCATACGTAGATAATGAATTCGGAGCTGCAGCTGCTA
CTGGGGATGGCGATGTTATGATGCGATTCTTACCAAGTTACCAAACAGTT
GAAAATATGAGAAGCGGAATGCCGCCATCTGAAGCTGCTGAACATGCATT
AAGACGCATCATAAAGTACTTTCCACACTTTTAAGGTGCTTTGGTAGCTG
CAAATAAAACTGGTTCATTCGGTGCAGCATGTTATGGATGGACTTTCCAA
TATTCAGTAATGACACCCCAAATGGATAAACCAGAAATTGTCACTGTTAA
ACCTTTTGAACTCTAATATCACGTTTGGTTTAAATACTTTATTCattaga
aataaagaactaaTACAATGGCTACATGGCGTTCCATGCTGCAATCAATG
CAGTGTAttgtagattttatttcaatacactttcttgaaaaacgtttgtt
ttttatattattaGTCGCTAGTAATTAGTCTTCTATTTGTCTTTTAGGTA
AATTAGTTAAGTACGAAAATGTGTTAATTGTTGGAAATTGGTcagtgttt
tttttgtttttgatttttgattttgagtcAGGTTTTCTAAACTGAATTTG
ATGTACATTTCGAAATTAGTTCCGACCTCTTGTTTAGCAATTTCCCTTGG
TAGCAATAGAAAGTTAGTTGTTTACTTCTTGatatttcattcaaattttg Run BLAST on NCBI protein sequence of TCONS_00055281-protein >TCONS_00055281-protein ID=TCONS_00055281-protein|Name=TCONS_00055281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MLIDINRLLKVTSVLVLVTILMISPAMSLPQLVINTWPLPNATAAAFKAL
ERGSLLDAIVDGCTNAEEDRKMTSVGWGGSPAENGETALDALIIDGVSHN
MGAVGSMKRIKNAIRVARHVLENTKHTLLVGEDATKFAVEMGFIEEDLTS
QESKEQWENWKAGKCQPNFWQNVIPDSTISCGPYQPKPFQFATKDTDREG
LITEDNHDTIGMIAINSHGDIAAGTSTNGATFKITGRVGDSPIPGSGAYV
DNEFGAAAATGDGDVMMRFLPSYQTVENMRSGMPPSEAAEHALRRIIKYF
PHF Run BLAST on NCBI transcript from alignment at scaffold_251:713487..715036 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at scaffold_251:713487..715036 (Clytia hemisphaerica)
caaaatttgaatgaaatatCAAGAAGTAAACAACTAACTTTCTATTGCTA
CCAAGGGAAATTGCTAAACAAGAGGTCGGAACTAATTTCGAAATGTACAT
CAAATTCAGTTTAGAAAACCTgactcaaaatcaaaaatcaaaaacaaaaa
aaacactgACCAATTTCCAACAATTAACACATTTTCGTACTTAACTAATT
TACCTAAAAGACAAATAGAAGACTAATTACTAGCGACtaataatataaaa
aacaaacgtttttcaagaaagtgtattgaaataaaatctacaaTACACTG
CATTGATTGCAGCATGGAACGCCATGTAGCCATTGTAttagttctttatt
tctaatGAATAAAGTATTTAAACCAAACGTGATATTAGAGTTCAAAAGGT
TTAACAGTGACAATTTCTGGTTTATCCATTTGGGGTGTCATTACTGAATA
TTGGAAAGTCCATCCATAACATGCTGCACCGAATGAACCAGTTTTATTTG
CAGCTACCAAAGCACCTTAAAAGTGTGGAAAGTACTTTATGATGCGTCTT
AATGCATGTTCAGCAGCTTCAGATGGCGGCATTCCGCTTCTCATATTTTC
AACTGTTTGGTAACTTGGTAAGAATCGCATCATAACATCGCCATCCCCAG
TAGCAGCTGCAGCTCCGAATTCATTATCTACGTATGCTCCTGACCCTGGG
ATTGGAGAATCTCCTACTCTGCCAGTAATTTTGAAAGTTGCACCATTAGT
GGAAGTTCCAGCAGCAATATCACCATGACTATTAATGGCTATCATACCAA
TAGTATCATGATTATCCTCAGTAATAAGCCCTTCACGATCTGTATCCTTT
GTTGCAAATTGGAAAGGTTTTGGTTGGTACGGTCCACATGAAATAGTAGA
ATCAGGTATAACATTCTGCCAAAAATTAGGTTGACATTTCCCAGCTTTCC
AGTTCTCCCATTGTTCTTTTGATTCTTGAGACGTTAAATCTTCTTCTATG
AATCCCATTTCAACTGCAAATTTGGTTGCATCTTCACCAACCAGCAGAGT
GTGTTTTGTATTCTCAAGAACATGCCTTGCAACACGGATTGCATTCTTGA
TTCTTTTCATACTACCAACAGCCCCCATATTATGAGAAACACCATCAATG
ATCAAAGCGTCCAAAGCAGTTTCCCCATTCTCAGCAGGGCTACCACCCCA
ACCAACTGAGGTCATCTTACGATCCTCTTCAGCATTAGTACAACCATCAA
CAATAGCATCCAATAATGATCCTCTTTCCAAGGCTTTGAAAGCAGCGGCT
GTGGCATTAGGTAATGGCCATGTATTGATGACGAGCTGAGGCAATGACAT
TGCTGGTGAGATCATCAATATAGTTACCAATACCAATACTGAAGTGACCT
TTAATAATCTGTTTATATCAATCAGCATTGTTTCATTGATATAGTAtcat
tattattgttttgattattgCTTAGTTTCTAATCCTAGTTGAAATACAAT
TAAAATActaaagcttttttaaagaaaattgaataaaattgataaaaggA
Coding sequence (CDS) from alignment at scaffold_251:713487..715036 >TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_251:713487..715036 (Clytia hemisphaerica)
TTAAAAGTGTGGAAAGTACTTTATGATGCGTCTTAATGCATGTTCAGCAG
CTTCAGATGGCGGCATTCCGCTTCTCATATTTTCAACTGTTTGGTAACTT
GGTAAGAATCGCATCATAACATCGCCATCCCCAGTAGCAGCTGCAGCTCC
GAATTCATTATCTACGTATGCTCCTGACCCTGGGATTGGAGAATCTCCTA
CTCTGCCAGTAATTTTGAAAGTTGCACCATTAGTGGAAGTTCCAGCAGCA
ATATCACCATGACTATTAATGGCTATCATACCAATAGTATCATGATTATC
CTCAGTAATAAGCCCTTCACGATCTGTATCCTTTGTTGCAAATTGGAAAG
GTTTTGGTTGGTACGGTCCACATGAAATAGTAGAATCAGGTATAACATTC
TGCCAAAAATTAGGTTGACATTTCCCAGCTTTCCAGTTCTCCCATTGTTC
TTTTGATTCTTGAGACGTTAAATCTTCTTCTATGAATCCCATTTCAACTG
CAAATTTGGTTGCATCTTCACCAACCAGCAGAGTGTGTTTTGTATTCTCA
AGAACATGCCTTGCAACACGGATTGCATTCTTGATTCTTTTCATACTACC
AACAGCCCCCATATTATGAGAAACACCATCAATGATCAAAGCGTCCAAAG
CAGTTTCCCCATTCTCAGCAGGGCTACCACCCCAACCAACTGAGGTCATC
TTACGATCCTCTTCAGCATTAGTACAACCATCAACAATAGCATCCAATAA
TGATCCTCTTTCCAAGGCTTTGAAAGCAGCGGCTGTGGCATTAGGTAATG
GCCATGTATTGATGACGAGCTGAGGCAATGACATTGCTGGTGAGATCATC
AATATAGTTACCAATACCAATACTGAAGTGACCTTTAATAATCTGTTTAT
ATCAATCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055281-exon-scaffold_251-1491911889:713487..715036 | TCONS_00055281-exon-scaffold_251-1491911889:713487..715036 | Clytia hemisphaerica | exon |
| TCONS_00055281-exon-scaffold_251-1510915933:713487..715036 | TCONS_00055281-exon-scaffold_251-1510915933:713487..715036 | Clytia hemisphaerica | exon |
| TCONS_00055281-exon-scaffold_251-1575043694:713487..715036 | TCONS_00055281-exon-scaffold_251-1575043694:713487..715036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:713487..715036 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
Blast
BLAST of TCONS_00055281 vs. Swiss-Prot (Human)
Match: ASPG (N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase OS=Homo sapiens GN=AGA PE=1 SV=2) HSP 1 Score: 315.849 bits (808), Expect = 1.088e-102 Identity = 178/313 (56.87%), Postives = 219/313 (69.97%), Query Frame = 3
Query: 207 LPQLVINTWPLPNATAAAFKALERG-SLLDAIVDGCTNAEEDRKMTSVGWGGSPAENGETALDALIIDGVSHNMGAVGSMKRIKNAIRVARHVLENTKHTLLVGEDATKFAVEMGFIEEDLTSQESKEQWENWKAGKCQPNFWQNVIPDSTISCGPYQPKPFQFATKDTDREGLITEDN--HDTIGMIAINSHGDIAAGTSTNGATFKITGRVGDSPIPGSGAYVDNEFGAAAATGDGDVMMRFLPSYQTVENMRSGMPPSEAAEHALRRIIKYFPHF*GALVAANKTGSFGAACYGW-TF-QYSVMTPQMDK 1130
LP LV+NTWP NAT AA++AL G S LDA+ GC E ++ SVG+GGSP E GET LDA+I+DG + ++GAVG ++RIKNAI VAR VLE+T HTLLVGE AT FA MGFI EDL++ S+ +W A CQPN+W+NVIPD + CGPY+P +E TED+ HDTIGM+ I+ G IAAGTSTNG FKI GRVGDSPIPG+GAY D+ GAAAATG+GD++MRFLPSYQ VE MR G P+ A + + RI K+FP F GA++ AN TGS+GAAC TF Q+S M +K
Sbjct: 27 LP-LVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINEDLSTTASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKPPGILKQDIPIHKE---TEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK 335
The following BLAST results are available for this feature:
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