TCONS_00055281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055281
Unique NameTCONS_00055281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=transcript|length=1550bp
TccttttatcaattttattcaattttctttaaaaaagctttagTATTTTA
ATTGTATTTCAACTAGGATTAGAAACTAAGcaataatcaaaacaataata
atgaTACTATATCAATGAAACAATGCTGATTGATATAAACAGATTATTAA
AGGTCACTTCAGTATTGGTATTGGTAACTATATTGATGATCTCACCAGCA
ATGTCATTGCCTCAGCTCGTCATCAATACATGGCCATTACCTAATGCCAC
AGCCGCTGCTTTCAAAGCCTTGGAAAGAGGATCATTATTGGATGCTATTG
TTGATGGTTGTACTAATGCTGAAGAGGATCGTAAGATGACCTCAGTTGGT
TGGGGTGGTAGCCCTGCTGAGAATGGGGAAACTGCTTTGGACGCTTTGAT
CATTGATGGTGTTTCTCATAATATGGGGGCTGTTGGTAGTATGAAAAGAA
TCAAGAATGCAATCCGTGTTGCAAGGCATGTTCTTGAGAATACAAAACAC
ACTCTGCTGGTTGGTGAAGATGCAACCAAATTTGCAGTTGAAATGGGATT
CATAGAAGAAGATTTAACGTCTCAAGAATCAAAAGAACAATGGGAGAACT
GGAAAGCTGGGAAATGTCAACCTAATTTTTGGCAGAATGTTATACCTGAT
TCTACTATTTCATGTGGACCGTACCAACCAAAACCTTTCCAATTTGCAAC
AAAGGATACAGATCGTGAAGGGCTTATTACTGAGGATAATCATGATACTA
TTGGTATGATAGCCATTAATAGTCATGGTGATATTGCTGCTGGAACTTCC
ACTAATGGTGCAACTTTCAAAATTACTGGCAGAGTAGGAGATTCTCCAAT
CCCAGGGTCAGGAGCATACGTAGATAATGAATTCGGAGCTGCAGCTGCTA
CTGGGGATGGCGATGTTATGATGCGATTCTTACCAAGTTACCAAACAGTT
GAAAATATGAGAAGCGGAATGCCGCCATCTGAAGCTGCTGAACATGCATT
AAGACGCATCATAAAGTACTTTCCACACTTTTAAGGTGCTTTGGTAGCTG
CAAATAAAACTGGTTCATTCGGTGCAGCATGTTATGGATGGACTTTCCAA
TATTCAGTAATGACACCCCAAATGGATAAACCAGAAATTGTCACTGTTAA
ACCTTTTGAACTCTAATATCACGTTTGGTTTAAATACTTTATTCattaga
aataaagaactaaTACAATGGCTACATGGCGTTCCATGCTGCAATCAATG
CAGTGTAttgtagattttatttcaatacactttcttgaaaaacgtttgtt
ttttatattattaGTCGCTAGTAATTAGTCTTCTATTTGTCTTTTAGGTA
AATTAGTTAAGTACGAAAATGTGTTAATTGTTGGAAATTGGTcagtgttt
tttttgtttttgatttttgattttgagtcAGGTTTTCTAAACTGAATTTG
ATGTACATTTCGAAATTAGTTCCGACCTCTTGTTTAGCAATTTCCCTTGG
TAGCAATAGAAAGTTAGTTGTTTACTTCTTGatatttcattcaaattttg
Run BLAST on NCBI

protein sequence of TCONS_00055281-protein

>TCONS_00055281-protein ID=TCONS_00055281-protein|Name=TCONS_00055281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MLIDINRLLKVTSVLVLVTILMISPAMSLPQLVINTWPLPNATAAAFKAL
ERGSLLDAIVDGCTNAEEDRKMTSVGWGGSPAENGETALDALIIDGVSHN
MGAVGSMKRIKNAIRVARHVLENTKHTLLVGEDATKFAVEMGFIEEDLTS
QESKEQWENWKAGKCQPNFWQNVIPDSTISCGPYQPKPFQFATKDTDREG
LITEDNHDTIGMIAINSHGDIAAGTSTNGATFKITGRVGDSPIPGSGAYV
DNEFGAAAATGDGDVMMRFLPSYQTVENMRSGMPPSEAAEHALRRIIKYF
PHF
Run BLAST on NCBI

transcript from alignment at scaffold_251:713487..715036

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at scaffold_251:713487..715036 (Clytia hemisphaerica)
caaaatttgaatgaaatatCAAGAAGTAAACAACTAACTTTCTATTGCTA
CCAAGGGAAATTGCTAAACAAGAGGTCGGAACTAATTTCGAAATGTACAT
CAAATTCAGTTTAGAAAACCTgactcaaaatcaaaaatcaaaaacaaaaa
aaacactgACCAATTTCCAACAATTAACACATTTTCGTACTTAACTAATT
TACCTAAAAGACAAATAGAAGACTAATTACTAGCGACtaataatataaaa
aacaaacgtttttcaagaaagtgtattgaaataaaatctacaaTACACTG
CATTGATTGCAGCATGGAACGCCATGTAGCCATTGTAttagttctttatt
tctaatGAATAAAGTATTTAAACCAAACGTGATATTAGAGTTCAAAAGGT
TTAACAGTGACAATTTCTGGTTTATCCATTTGGGGTGTCATTACTGAATA
TTGGAAAGTCCATCCATAACATGCTGCACCGAATGAACCAGTTTTATTTG
CAGCTACCAAAGCACCTTAAAAGTGTGGAAAGTACTTTATGATGCGTCTT
AATGCATGTTCAGCAGCTTCAGATGGCGGCATTCCGCTTCTCATATTTTC
AACTGTTTGGTAACTTGGTAAGAATCGCATCATAACATCGCCATCCCCAG
TAGCAGCTGCAGCTCCGAATTCATTATCTACGTATGCTCCTGACCCTGGG
ATTGGAGAATCTCCTACTCTGCCAGTAATTTTGAAAGTTGCACCATTAGT
GGAAGTTCCAGCAGCAATATCACCATGACTATTAATGGCTATCATACCAA
TAGTATCATGATTATCCTCAGTAATAAGCCCTTCACGATCTGTATCCTTT
GTTGCAAATTGGAAAGGTTTTGGTTGGTACGGTCCACATGAAATAGTAGA
ATCAGGTATAACATTCTGCCAAAAATTAGGTTGACATTTCCCAGCTTTCC
AGTTCTCCCATTGTTCTTTTGATTCTTGAGACGTTAAATCTTCTTCTATG
AATCCCATTTCAACTGCAAATTTGGTTGCATCTTCACCAACCAGCAGAGT
GTGTTTTGTATTCTCAAGAACATGCCTTGCAACACGGATTGCATTCTTGA
TTCTTTTCATACTACCAACAGCCCCCATATTATGAGAAACACCATCAATG
ATCAAAGCGTCCAAAGCAGTTTCCCCATTCTCAGCAGGGCTACCACCCCA
ACCAACTGAGGTCATCTTACGATCCTCTTCAGCATTAGTACAACCATCAA
CAATAGCATCCAATAATGATCCTCTTTCCAAGGCTTTGAAAGCAGCGGCT
GTGGCATTAGGTAATGGCCATGTATTGATGACGAGCTGAGGCAATGACAT
TGCTGGTGAGATCATCAATATAGTTACCAATACCAATACTGAAGTGACCT
TTAATAATCTGTTTATATCAATCAGCATTGTTTCATTGATATAGTAtcat
tattattgttttgattattgCTTAGTTTCTAATCCTAGTTGAAATACAAT
TAAAATActaaagcttttttaaagaaaattgaataaaattgataaaaggA

Coding sequence (CDS) from alignment at scaffold_251:713487..715036

>TCONS_00055281 ID=TCONS_00055281|Name=TCONS_00055281|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_251:713487..715036 (Clytia hemisphaerica)
TTAAAAGTGTGGAAAGTACTTTATGATGCGTCTTAATGCATGTTCAGCAG
CTTCAGATGGCGGCATTCCGCTTCTCATATTTTCAACTGTTTGGTAACTT
GGTAAGAATCGCATCATAACATCGCCATCCCCAGTAGCAGCTGCAGCTCC
GAATTCATTATCTACGTATGCTCCTGACCCTGGGATTGGAGAATCTCCTA
CTCTGCCAGTAATTTTGAAAGTTGCACCATTAGTGGAAGTTCCAGCAGCA
ATATCACCATGACTATTAATGGCTATCATACCAATAGTATCATGATTATC
CTCAGTAATAAGCCCTTCACGATCTGTATCCTTTGTTGCAAATTGGAAAG
GTTTTGGTTGGTACGGTCCACATGAAATAGTAGAATCAGGTATAACATTC
TGCCAAAAATTAGGTTGACATTTCCCAGCTTTCCAGTTCTCCCATTGTTC
TTTTGATTCTTGAGACGTTAAATCTTCTTCTATGAATCCCATTTCAACTG
CAAATTTGGTTGCATCTTCACCAACCAGCAGAGTGTGTTTTGTATTCTCA
AGAACATGCCTTGCAACACGGATTGCATTCTTGATTCTTTTCATACTACC
AACAGCCCCCATATTATGAGAAACACCATCAATGATCAAAGCGTCCAAAG
CAGTTTCCCCATTCTCAGCAGGGCTACCACCCCAACCAACTGAGGTCATC
TTACGATCCTCTTCAGCATTAGTACAACCATCAACAATAGCATCCAATAA
TGATCCTCTTTCCAAGGCTTTGAAAGCAGCGGCTGTGGCATTAGGTAATG
GCCATGTATTGATGACGAGCTGAGGCAATGACATTGCTGGTGAGATCATC
AATATAGTTACCAATACCAATACTGAAGTGACCTTTAATAATCTGTTTAT
ATCAATCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034824XLOC_034824Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055281-proteinTCONS_00055281-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055281-exon-scaffold_251-1491911889:713487..715036TCONS_00055281-exon-scaffold_251-1491911889:713487..715036Clytia hemisphaericaexon
TCONS_00055281-exon-scaffold_251-1510915933:713487..715036TCONS_00055281-exon-scaffold_251-1510915933:713487..715036Clytia hemisphaericaexon
TCONS_00055281-exon-scaffold_251-1575043694:713487..715036TCONS_00055281-exon-scaffold_251-1575043694:713487..715036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:713487..715036 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.7368	33.0485	11.0235	10.1693	20.7644	13.7582	14.6939	16.2718	17.3894	17.6459	15.0637	14.1662	14.9559	13.5218	15.5785	16.1861	27.8644	29.6593	23.8769	30.1944	25.9886	23.2815	25.3897	26.475	14.2024	15.0329	10.9193	6.46548	16.5908	14.2108
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000246Peptidase_T2
IPR029055Ntn_hydrolases_N
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00055281 vs. Swiss-Prot (Human)
Match: ASPG (N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase OS=Homo sapiens GN=AGA PE=1 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.088e-102
Identity = 178/313 (56.87%), Postives = 219/313 (69.97%), Query Frame = 3 
Query:  207 LPQLVINTWPLPNATAAAFKALERG-SLLDAIVDGCTNAEEDRKMTSVGWGGSPAENGETALDALIIDGVSHNMGAVGSMKRIKNAIRVARHVLENTKHTLLVGEDATKFAVEMGFIEEDLTSQESKEQWENWKAGKCQPNFWQNVIPDSTISCGPYQPKPFQFATKDTDREGLITEDN--HDTIGMIAINSHGDIAAGTSTNGATFKITGRVGDSPIPGSGAYVDNEFGAAAATGDGDVMMRFLPSYQTVENMRSGMPPSEAAEHALRRIIKYFPHF*GALVAANKTGSFGAACYGW-TF-QYSVMTPQMDK 1130
            LP LV+NTWP  NAT AA++AL  G S LDA+  GC   E ++   SVG+GGSP E GET LDA+I+DG + ++GAVG ++RIKNAI VAR VLE+T HTLLVGE AT FA  MGFI EDL++  S+    +W A  CQPN+W+NVIPD +  CGPY+P           +E   TED+  HDTIGM+ I+  G IAAGTSTNG  FKI GRVGDSPIPG+GAY D+  GAAAATG+GD++MRFLPSYQ VE MR G  P+ A +  + RI K+FP F GA++ AN TGS+GAAC    TF Q+S M    +K
Sbjct:   27 LP-LVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINEDLSTTASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKPPGILKQDIPIHKE---TEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK 335
The following BLAST results are available for this feature:
BLAST of TCONS_00055281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPG1.088e-10256.87N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase OS... [more]
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