TCONS_00055275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055275
Unique NameTCONS_00055275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055275 ID=TCONS_00055275|Name=TCONS_00055275|organism=Clytia hemisphaerica|type=transcript|length=501bp
NNCGATTTCCAAGTATGCCCCGTTCAAGGACATAATATGAATGGGAAAGT
TGAACGGAAGATACAAGAAATAAACAATTCCATCAGTAAATCACTCAACA
ACCAAAGATTATCTATTCTCCAATGGGAGACATTAACAGCTTCAATTGCT
AACCAAATCAACAACTTACCCTTGGCTATTGGAGATGTCACCGGAGATTT
CGAGTGCCTAGACCTCATTACACCAAATCGATTAATGCTAGGCAGAAACA
ACGACAGAGCAATCGACGGGCTCATACTCTGTGATCATCCCACCAAGATC
CTGAAGGATAACGAAAAGGTATTCGATACATGGTTTGACGTTTGACTCAC
CGTACATGTTCCAAAATTGGTCAAGCAAACGAAATGGTACGTAAGCGATC
AAATTAGTGTTGGAGACATTGTTTTGTTCATTAAACATGAATCATCATTA
TCAAACAAATATACATACGGTTTGGTAAAGGAATTGGAGTTTGGAGATGN
N
Run BLAST on NCBI

protein sequence of TCONS_00055275-protein

>TCONS_00055275-protein ID=TCONS_00055275-protein|Name=TCONS_00055275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
XDFQVCPVQGHNMNGKVERKIQEINNSISKSLNNQRLSILQWETLTASIA
NQINNLPLAIGDVTGDFECLDLITPNRLMLGRNNDRAIDGLILCDHPTKI
LKDNEKVFDTWFDV
Run BLAST on NCBI

transcript from alignment at scaffold_251:636242..636742

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055275 ID=TCONS_00055275|Name=TCONS_00055275|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_251:636242..636742 (Clytia hemisphaerica)
NNCATCTCCAAACTCCAATTCCTTTACCAAACCGTATGTATATTTGTTTG
ATAATGATGATTCATGTTTAATGAACAAAACAATGTCTCCAACACTAATT
TGATCGCTTACGTACCATTTCGTTTGCTTGACCAATTTTGGAACATGTAC
GGTGAGTCAAACGTCAAACCATGTATCGAATACCTTTTCGTTATCCTTCA
GGATCTTGGTGGGATGATCACAGAGTATGAGCCCGTCGATTGCTCTGTCG
TTGTTTCTGCCTAGCATTAATCGATTTGGTGTAATGAGGTCTAGGCACTC
GAAATCTCCGGTGACATCTCCAATAGCCAAGGGTAAGTTGTTGATTTGGT
TAGCAATTGAAGCTGTTAATGTCTCCCATTGGAGAATAGATAATCTTTGG
TTGTTGAGTGATTTACTGATGGAATTGTTTATTTCTTGTATCTTCCGTTC
AACTTTCCCATTCATATTATGTCCTTGAACGGGGCATACTTGGAAATCGN
N

Coding sequence (CDS) from alignment at scaffold_251:636242..636742

>TCONS_00055275 ID=TCONS_00055275|Name=TCONS_00055275|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_251:636242..636742 (Clytia hemisphaerica)
TCAAACGTCAAACCATGTATCGAATACCTTTTCGTTATCCTTCAGGATCT
TGGTGGGATGATCACAGAGTATGAGCCCGTCGATTGCTCTGTCGTTGTTT
CTGCCTAGCATTAATCGATTTGGTGTAATGAGGTCTAGGCACTCGAAATC
TCCGGTGACATCTCCAATAGCCAAGGGTAAGTTGTTGATTTGGTTAGCAA
TTGAAGCTGTTAATGTCTCCCATTGGAGAATAGATAATCTTTGGTTGTTG
AGTGATTTACTGATGGAATTGTTTATTTCTTGTATCTTCCGTTCAACTTT
CCCATTCATATTATGTCCTTGAACGGGGCATACTTGGAAATCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034818XLOC_034818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055275-exon-scaffold_251-1491911889:636242..636742TCONS_00055275-exon-scaffold_251-1491911889:636242..636742Clytia hemisphaericaexon
TCONS_00055275-exon-scaffold_251-1510915933:636242..636742TCONS_00055275-exon-scaffold_251-1510915933:636242..636742Clytia hemisphaericaexon
TCONS_00055275-exon-scaffold_251-1575043694:636242..636742TCONS_00055275-exon-scaffold_251-1575043694:636242..636742Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055275-proteinTCONS_00055275-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:636242..636742 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.34286	3.50526	2.91259	2.55743	4.23217	2.72629	1.93832	3.64389	2.6283	3.7031	2.86602	2.40689	1.45449	1.27141	1.06626	0.666343	0.729671	1.00525	0.774938	2.54083	0.822306	0.996928	1.39308	0.842639	1.95672	2.79413	1.70363	0.411237	4.91652	4.40696
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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