TCONS_00055261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055261
Unique NameTCONS_00055261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055261 ID=TCONS_00055261|Name=TCONS_00055261|organism=Clytia hemisphaerica|type=transcript|length=301bp
CTTGGACTGTATGATGTACGGACTGAAGTGGAGTAGAGACACAGCAATAC
TTAAGGCTTCGATTTTGCATGGGATCCATGAGATCTGACGTTCCTTCAGC
TTGGCACTGAAATATCCATCAATCTTTAAGGAGCCGTTACGATGTACGTA
CAGGGTTGAACCGATACCGGGAAGTTTTTCTGCGCCATCTGTGACAATCC
ACAGTTGGTCATCTGGTTGAGGAATGGTGATTGAACGGTTGTTGTGTAGA
TGTAACTGGGAATCACGAAAAACTTGAAGGAGCTCATCGGTCCAGTTAAG
A
Run BLAST on NCBI

protein sequence of TCONS_00055261-protein

>TCONS_00055261-protein ID=TCONS_00055261-protein|Name=TCONS_00055261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
LNWTDELLQVFRDSQLHLHNNRSITIPQPDDQLWIVTDGAEKLPGIGSTL
YVHRNGSLKIDGYFSAKLKERQISWIPCKIEALSIAVSLLHFSPYIIQSK
Run BLAST on NCBI

transcript from alignment at scaffold_251:210379..210679

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055261 ID=TCONS_00055261|Name=TCONS_00055261|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_251:210379..210679 (Clytia hemisphaerica)
TCTTAACTGGACCGATGAGCTCCTTCAAGTTTTTCGTGATTCCCAGTTAC
ATCTACACAACAACCGTTCAATCACCATTCCTCAACCAGATGACCAACTG
TGGATTGTCACAGATGGCGCAGAAAAACTTCCCGGTATCGGTTCAACCCT
GTACGTACATCGTAACGGCTCCTTAAAGATTGATGGATATTTCAGTGCCA
AGCTGAAGGAACGTCAGATCTCATGGATCCCATGCAAAATCGAAGCCTTA
AGTATTGCTGTGTCTCTACTCCACTTCAGTCCGTACATCATACAGTCCAA
G

Coding sequence (CDS) from alignment at scaffold_251:210379..210679

>TCONS_00055261 ID=TCONS_00055261|Name=TCONS_00055261|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_251:210379..210679 (Clytia hemisphaerica)
CTTAACTGGACCGATGAGCTCCTTCAAGTTTTTCGTGATTCCCAGTTACA
TCTACACAACAACCGTTCAATCACCATTCCTCAACCAGATGACCAACTGT
GGATTGTCACAGATGGCGCAGAAAAACTTCCCGGTATCGGTTCAACCCTG
TACGTACATCGTAACGGCTCCTTAAAGATTGATGGATATTTCAGTGCCAA
GCTGAAGGAACGTCAGATCTCATGGATCCCATGCAAAATCGAAGCCTTAA
GTATTGCTGTGTCTCTACTCCACTTCAGTCCGTACATCATACAGTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034804XLOC_034804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055261-exon-scaffold_251-1491911889:210379..210679TCONS_00055261-exon-scaffold_251-1491911889:210379..210679Clytia hemisphaericaexon
TCONS_00055261-exon-scaffold_251-1510915933:210379..210679TCONS_00055261-exon-scaffold_251-1510915933:210379..210679Clytia hemisphaericaexon
TCONS_00055261-exon-scaffold_251-1575043694:210379..210679TCONS_00055261-exon-scaffold_251-1575043694:210379..210679Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055261-proteinTCONS_00055261-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:210379..210679 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.642166	1.03879	3.69389	1.98068	1.85429	1.62279	1.60807	0.390207	0	1.0246	0.798044	0.656101	1.40819	1.15652	1.18539	3.27537	0.42843	1.25033	1.63472	0	0	1.24055	1.84527	0.528115	0	0.427485	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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