TCONS_00055260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055260
Unique NameTCONS_00055260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055260 ID=TCONS_00055260|Name=TCONS_00055260|organism=Clytia hemisphaerica|type=transcript|length=777bp
GAAATAAAAAAGACAACTTTCGTAAGGATGTTGAGTTTTCTGTATATCCC
ACTTTGTGATGCACTGTGGAGTAACcaaatttatcaaacaaattggGTTA
TGGAAACTGATCGAACTGCAATCTGTTTATCGCACCAGTTGATTGAATAC
TCAACAACTTTTTACGAAATCTGATAGttccatttattttttaaatcaaa
ctttaatcgctGGTTGGaaacaaaagtttaaaattCAAGGGAATTTCGGA
AATTGACATGAATATTGAATTTAGCAAAATTTAGCAGAATTTAAGGAATT
Tacataaaatattcaaaatcccctgatttttttacaaaaaccttgaattt
caaattttaggtACTTTTTCAGATGTTTTGAAGGCAATCAGGGCTGATTC
AGGGGAAAAATTGTAGTAATTACAGTATCTGGTATTGCCTGAAACCTCCC
TATTTAGTGGGCGagacaaagtttttcaaatttatttaaaatcagCTTTC
CAATGTACTTTAAAAACTTGTAAGAATTCAAAATCTGCTTGGGGATATTT
ACTGTATCCTAAAACAGGGGCCGTggctccactttgaaagtgatGGGGCC
ATGATATACTGACGAAGGAggtgccaccatggttggcgtcAACgggtaaa
attttttgaattttaacccTTCTAGATCGCCTAAAACAGGTCTGTTTTAA
Ggttatcaaacaaaatttggcttgattagtaaattttatttttactttga
aaaaatgtggtcgggCCAAGGCCCGGG
Run BLAST on NCBI

transcript from alignment at scaffold_251:116183..116959

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055260 ID=TCONS_00055260|Name=TCONS_00055260|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_251:116183..116959 (Clytia hemisphaerica)
CCCGGGCCTTGGcccgaccacattttttcaaagtaaaaataaaatttact
aatcaagccaaattttgtttgataacCTTAAAACAGACCTGTTTTAGGCG
ATCTAGAAgggttaaaattcaaaaaattttacccGTTgacgccaaccatg
gtggcaccTCCTTCGTCAGTATATCATGGCCCCatcactttcaaagtgga
gccACGGCCCCTGTTTTAGGATACAGTAAATATCCCCAAGCAGATTTTGA
ATTCTTACAAGTTTTTAAAGTACATTGGAAAGctgattttaaataaattt
gaaaaactttgtctCGCCCACTAAATAGGGAGGTTTCAGGCAATACCAGA
TACTGTAATTACTACAATTTTTCCCCTGAATCAGCCCTGATTGCCTTCAA
AACATCTGAAAAAGTacctaaaatttgaaattcaaggtttttgtaaaaaa
atcaggggattttgaatattttatgtAAATTCCTTAAATTCTGCTAAATT
TTGCTAAATTCAATATTCATGTCAATTTCCGAAATTCCCTTGaattttaa
acttttgtttCCAACCagcgattaaagtttgatttaaaaaataaatggaa
CTATCAGATTTCGTAAAAAGTTGTTGAGTATTCAATCAACTGGTGCGATA
AACAGATTGCAGTTCGATCAGTTTCCATAACccaatttgtttgataaatt
tgGTTACTCCACAGTGCATCACAAAGTGGGATATACAGAAAACTCAACAT
CCTTACGAAAGTTGTCTTTTTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034803XLOC_034803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055260-exon-scaffold_251-1491911889:116183..116959TCONS_00055260-exon-scaffold_251-1491911889:116183..116959Clytia hemisphaericaexon
TCONS_00055260-exon-scaffold_251-1510915933:116183..116959TCONS_00055260-exon-scaffold_251-1510915933:116183..116959Clytia hemisphaericaexon
TCONS_00055260-exon-scaffold_251-1575043694:116183..116959TCONS_00055260-exon-scaffold_251-1575043694:116183..116959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:116183..116959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437226	0.304546	0.0707213	0.276759	0.42116	0.532489	0.481819	0.902147	0.315807	0.391178	0.885936	0.540781	0.872355	1.07851	0.709346	0.685113	1.17223	0.961196	1.52714	0.972719	1.14742	0.883693	0.78778	0.455768	0.402368	0.83791	0.770816	0.365616	0.0693266	0.282531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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