TCONS_00055244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055244
Unique NameTCONS_00055244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055244 ID=TCONS_00055244|Name=TCONS_00055244|organism=Clytia hemisphaerica|type=transcript|length=527bp
CGTTTGATTTTGAAGGCGATGCGTCATTGGGAGAGCGAGACATGTATCAA
ATTTGTCAAGAAGACAAAACAAGTTGATTTTCTACACATTTATCCTGGCA
ATGGATGTTGCAGTTACGTTGGTCGTCGTGGTGGTCGCCAATATTTATCG
CTCGGCCGCGGCTGTTTACGATTTGGTATCGTTACACACGAGTTAGGACA
CGCTGTCGGTTTTTGGCACGAACAGAATCGCCCTGATCGATCGATTTATA
TCGATGTTTTATACGATAATGTCGATTCATCGAAATTCTTAAATTTCGAT
CCACGAGGAATGAATGAAGTCAATACTTTTGATCAGATTTACGATTACGA
ATCGATCATGCATTACGGAACGAGATTTTTCTCGAAGAATGATGGTAAAA
CAATTCGCGCAAAGGAGGTCGGGAAAAACGTTAACGAAAACACGATTGGG
AAATCTTATTACAAATTTGACGGACCGGTTTTAAGCACACAAGATATTTT
GGAAACGAATCTTCTATACAAATGCAC
Run BLAST on NCBI

transcript from alignment at scaffold_251:737722..738982-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055244 ID=TCONS_00055244|Name=TCONS_00055244|organism=Clytia hemisphaerica|type=transcript|length=1261bp|location=Sequence derived from alignment at scaffold_251:737722..738982- (Clytia hemisphaerica)
CGTTTGATTTTGAAGGCGATGCGTCATTGGGAGAGCGAGACATGTATCAA
ATTTGTCAAGAAGACAAAACAAGTTGATTTTCTACACATTTATCCTGGCA
ATGGGTAAGAAATTCAATGAACATAAACGTTTGTATAAGAACATCCAATG
AATTTTCGGATGTTCATAACATTTTGAGTTTTCAAGCCTTAAAATGTTCT
TAAAATTTTCCTATTTTCACCATTTTGTAAGTATTCTTATGCAATTTCCT
AAGAAATTNATTTTCTACACATTTATCCTGGCAATGGGTAAGAAATTCAA
TGAACATAAAAAAATTTTTCGGATGTTCTTAACATTTTGAGTTTTCAAGC
CTTAAAATGTTCTTAAAATTTTCCTATTTTCACCATTTTGTAAGTATTCT
TATGCAATTTCCTGAGAAATCTTGTGTTATCGAGTCCGCAAAGCCTTAAA
ATGTTCTTAACTTGTTCTTAATATTTTGCCATTAATGTTTACACAAATTT
CCGATTCTTTCAAAACTTGGTCACGCTTTTCTTGAAACTAGTCTGAATCG
CAGACAAAACTGTGTTATAAAAAGCTTTAAGTAGCATGAGGGTACCAGAG
GCTTAATTTTCAACAATCAAAAAGTTATTTTCTGCTTCTTTCTTTTCCTC
AGATGTTGCAGTTACGTTGGTCGTCGTGGTGGTCGCCAATATTTATCGCT
CGGCCGCGGCTGTTTACGATTTGGTATCGTTACACACGAGTTAGGACACG
CTGTCGGTTTTTGGCACGAACAGAATCGCCCTGATCGATCGATTTATATC
GATGTTTTATACGATAATGTCGATTCATCGAAATTCTTAAATTTCGATCC
ACGAGGAATGAATGAAGTCAATACTTTTGATCAGGTAACTTTTTCTCTAT
TTTACCTGACCAATCAGAACGCTTCAATCCAAGATTTAAACCAATCACTT
TATTTCATTCAGTTTTAAACATCAATCAAACCGCTCAAAGCCATGTTCTC
AACAAACCAAATGACTTTATTTTGAATTTATTGTTTTAAACGTTGACCAA
TCAAATCACTTTATTCACAGATTTACGATTACGAATCGATCATGCATTAC
GGAACGAGATTTTTCTCGAAGAATGATGGTAAAACAATTCGCGCAAAGGA
GGTCGGGAAAAACGTTAACGAAAACACGATTGGGAAATCTTATTACAAAT
TTGACGGACCGGTTTTAAGCACACAAGATATTTTGGAAACGAATCTTCTA
TACAAATGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034792XLOC_034792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055244-exon-scaffold_251-1575043694:738879..738982TCONS_00055244-exon-scaffold_251-1575043694:738879..738982Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1575043694:738099..738330TCONS_00055244-exon-scaffold_251-1575043694:738099..738330Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1575043694:737722..737912TCONS_00055244-exon-scaffold_251-1575043694:737722..737912Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1510915933:738879..738982TCONS_00055244-exon-scaffold_251-1510915933:738879..738982Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1510915933:738099..738330TCONS_00055244-exon-scaffold_251-1510915933:738099..738330Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1510915933:737722..737912TCONS_00055244-exon-scaffold_251-1510915933:737722..737912Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1491911889:738879..738982TCONS_00055244-exon-scaffold_251-1491911889:738879..738982Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1491911889:738099..738330TCONS_00055244-exon-scaffold_251-1491911889:738099..738330Clytia hemisphaericaexon
TCONS_00055244-exon-scaffold_251-1491911889:737722..737912TCONS_00055244-exon-scaffold_251-1491911889:737722..737912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:737722..738982 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.02078	0	0	6.31177	2.86991	1.93764	0.799289	2.16306	3.90399	2.43932	1.41423	6.35824	6.68286	4.78181	7.64849	5.65262	4.49886	2.53098	3.7701	6.20287	0.345816	0.124383	0.570514	3.25413	4.63681	5.38607	5.38028	5.38584	11.2111
Blast
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BLAST of TCONS_00055244 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.530e-37
Identity = 75/178 (42.13%), Postives = 100/178 (56.18%), Query Frame = 1 
Query:    1 RLILK-AMRHWESETCIKFVKKTKQVDFLHI-YPGNGCCSYVGRRGG-RQYLSLGRGCLRFGIVTHELGHAVGFWHEQNRPDRSIYIDVLYDNVDSSKFLNFDPRGMNEVNTFDQIYDYESIMHYGTRFFSKNDGKTIRAKEVGKNVNENTIGKSYYKFDGPVLSTQDILETNLLYKC 525
            R I K AMRHWE  TC+ F+++T +  F+   Y   GCCSYVGRRGG  Q +S+G+ C +FGIV HELGH VGFWHE  RPDR  ++ ++ +N+   +  NF      EV++  + YD++SIMHY    FS+             N    TIG+         LS  DI +   LYKC
Sbjct:  177 RAIFKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVR------LSQGDIAQARKLYKC 348
The following BLAST results are available for this feature:
BLAST of TCONS_00055244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL23.530e-3742.13Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=... [more]
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