TCONS_00055243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055243
Unique NameTCONS_00055243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055243 ID=TCONS_00055243|Name=TCONS_00055243|organism=Clytia hemisphaerica|type=transcript|length=1128bp
GTTAAAGGTTCCTTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGA
CGTCAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAAC
GGAACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTC
GGCAACGAGAAAAACCGTAAAACGGGCCAATGTGAGGATGATTACGTAGA
AATACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCG
GCAATACATTACCGTCACCTGTTACAACGACGAGCGGCAGTTTATACGTC
AGACTCCACACGtcgggaaaaaataaaaataagaaatcattGTCGCCGCA
AATGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAtCTGTTCACATC
ACATCAAACAATTTCCAACACGCATCCAGTCCCCCGATTTTCCATTCGCT
TACAAAAAAGGACAAGATTGTTTATGGGTTATCGAGTCTGACAAAGGAAT
GCAAATTGAACTCGATTTCCCATTCTTCTCATTAAGAGAATTGGACAAGG
AACGTGGTTGCCTCGATTATATTGAAATTCATGAGGGCGATGGTAACAGT
GAGAAATTTATCGGACGTTTCTGTGGTACAAATAGTCCGAAGAAAATTAT
TTCCTCGCTGAACCAAATCAAGATACATTTTCATGCcagcaaaaagaaaa
gattgGGATGGTATTTAGGATTCCAGGCTAACATCAAACAGAAAGACATC
GATGAATGTGCCCTTGGACTTCATTCATGCACGCAAGCCTGTATCAACTA
TCCTGGTGGTTTCTTCTGTGGTTGTTATTTGGGTTACCATACAGTCTATC
AGAAAGATTCAAGAATCGCTGAATGCGTGGACAAGGATGAATGTGCGATA
AAGAACGGAGGCTGTTCACACGCATGCGTGAATACAGCTGGAAGCTTCTT
GTGCGCATGTCCTAAAGGATACACACTGGCTGCTAACAAAACAACCTGTA
TAGATATCAACGAATGCCAGTTCAAGAAGCAACCATGTGACCATTTCTGC
ACCAATcagattggttctttcaaatgCTCTTGTAAAGATGGATACCTTCT
TCAAAATGACAACAAGACGTGTAACGAG
Run BLAST on NCBI

transcript from alignment at scaffold_251:733130..737272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055243 ID=TCONS_00055243|Name=TCONS_00055243|organism=Clytia hemisphaerica|type=transcript|length=4143bp|location=Sequence derived from alignment at scaffold_251:733130..737272- (Clytia hemisphaerica)
GTTAAAGGTTCCTTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGA
CGTCAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAAC
GGAACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTC
GGCAACGAGAAAAACCGTAAAACGGGCCAATGTGAGGATGATTACGTAGA
AATACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCG
GCAATACATTACCGTCACCTGTTACAACGACGAGCGGCAGTTTATACGTC
AGACTCCACACGTCGGGAAAAAATAAAAATAAGAAATCATTGTCGCCGCA
AATGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAGTGAGTGATCGA
TTTTAATTTTTTTATCCTTGATATACAGGGCGTGATTTTTTAAACGGAAA
CAACCAAAAAAACTCNTTTAATTTTTTCATCCTTGGTATACAGGGCGTGA
TTTTTTATACGGAAACAACCAAAAACACTTCGAAACAAAATGGTCTTCAA
GGTACCAAGAATTCCCTTCGAATAATAGAAAGAATTACGGAGAGAGAGTG
TTTTTATATGACATCCAGCGGAGCAGGCCAATGCTTTAGTTTGAATAACA
GAGAGATTCGAATAATATAAGTTCGAATTAGAGTAAAAGTTGACTGTATA
AAACTTGTGGCTAGTGTCTGGTGTTTTTCTGATGTGCTGTAAATATTTCA
GTGACGACCTTTTGACGAGAAAATCAGTATTATATCTTCCTGGTCAAAAT
TTAAATACACGTTTTTTTATAAGAACATCCAAAATTTTTGAAACCTTCGG
ATACTCTTAAAGGGATAATCAGATGGTCTGAGATATTTTGCCTGCAGATA
GCTTCTAGGATTTTAGGAAAAACCTCTAAATTTCTCGGTGTACTTATTTT
CCTAACTAAAGTTATGCCACTTTGAAATTTTGAACCTTTGCTTGAAAACA
ATAGAAAAAAGTGTGAAAAGTCCCTGAAAAGTCCCATTTTTCGAGATTTC
AAATTGGCATAACTTGAGTTAGGAAAATAAGTACACCGAAAAATGTAGAG
GTTTTTCCTAAAATCCTAGAAGCTATCTGCAGGCAAAATATCTCAGACCA
TCTGATTATCCCTTTAACTTTTTGAGTTTTAAGCCTAAGAATGTTCTTAA
CATGTTCTTATTTTCACCGTTTTTTGAGAATTTTTTTCCATTTTTCTAAT
AAATCGGGTGTTTTAGAGTCTGCGAAGCCTTATGTTCTTAAACTTGTTCT
TAGTATTTCGGCCATCGAAGCCTGATTTTCTTATATAGTTTGTTCTAATA
AAAAACGTGTGCAAATCCAACTTTTTCTTCTCTTTCAGTCTGTTCACATC
ACATCAAACAATTTCCAACACGCATCCAGTCCCCCGATTTTCCATTCGCT
TACAAAAAAGGACAAGATTGTTTATGGGTTATCGAGTCTGACAAAGGAAT
GCAAATTGAACTCGATTTCCCATTCTTCTCATTAAGAGAATTGGACAAGG
AACGTGGTTGCCTCGATTATATTGAAATTCATGAGGGCGATGGTAACAGT
GAGAAATTTATCGGACGTTTCTGTGGTACAAATAGTCCGAAGAAAATTAT
TTCCTCGCTGAACCAAATCAAGATACATTTTCATGCCAGCAAAAAGAAAA
GATTGGGATGGTATTTAGGATTCCAGGCTAACATCAAACAGAAAGGTATT
AGCATTTTTGAATTTTTCAATCTCTTCAAAATAAAAATCAACAAATGATC
TAAGTTCTAAGGTCCTCGTTTTTTGTTATCATCTATCATTTTAAAAGAAT
GATTTTTAATTGGGGTCAAGATAAAAACCTTGCTCATTTCGTGCAGTCTT
GTCTTCTTTATACGTTTTATGAGAAAATACCAAGTAGATAAGGCTCGCGT
GTAATCGAAAGGAGTGATAGTCAAGTTAGTCAATCCTCCCATCAATTCAT
AGATTCATAGATAGTTTAGCCAGCATGACGTGGCCTCCGTGAAAACAATA
GAAAGACTGTCTAAAAGACCCAGATTAATGGGCTATCCACGTAAAATATT
GACTCTTTCTATCTATATAAATTGTGGAAATCGAAAAAAGAATCAATATT
TCCTAACCCCAGTTACCATTCTTTATCAATAGACATCGATGAATGTGCCC
TTGGACTTCATTCATGCACGCAAGCCTGTATCAACTATCCTGGTGGTTTC
TTCTGTGGTTGTTATTTGGGTTACCATACAGTCTATCAGAAAGATTCAAG
AATCGCTGAATGCGTGGGTAAGTAACCCAGCTGACACACAACGTTGTTTC
AACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAGAAAAACGTTGA
AACAACGTTGCGTGCCAGCTGGGAAGTGTTTATTGGAAGCGATCTTTCGT
GATGAGATTCACAAAATGATAGATTCCTCAAGGTATTTAGGTAATGATGG
CGCAGAATTGACGTTGTGTCTTTTGTCAGGCGTTGAAATCCGGGGGCGCT
TGGTGCCACTTTTTACGTCAAAGAAAGTGTTTATTAGAAGTGAGCTTTTG
TACTGAGATGTCCAAAATGATAGATTCCTCAAGGCACAATTGGCGCTGTG
TCCGGGGGTTTGATGCCACTTCAAAGTCAAAAAGAGCCGCTTTTTCGAAG
ACATTTAGCATTCCCTATTTTTTCCTGAGTACTTTCCCGTGATCCTAGTT
AAAGGTTTTGTTTTTACATAAATGTTCCCGTTTCATATAAGACACATATC
AGGACAGTATCTACCTATTGTTATGTTATGCTGATAAAAGCAAAAAATGT
TGTTCTTTTCCTTTGACCAATCTTGCTCCACATCCGTGTCAATCCAATGT
TAAAAAGCTTATGAATTAAAATTGACAAATAAACAAACTATATTACTCTT
ATCTAAAAATAAAACCTTTAAGCCTTGAAAGGATTGAACTATTTTGACCC
CATTTCTACGCTCTCGTTTTAGACAAGGATGAATGTGCGATAAAGAACGG
AGGCTGTTCACACGCATGCGTGAATACAGCTGGAAGCTTCTTGTGCGCAT
GTCCTAAAGGATACACACTGGCTGCTAACAAAACAACCTGTATAGGTAGG
TGTCCCACAATGGGAAAGAAAAATTTTCCAGTTTCCAGTCTACGAAGGCC
GAATGGCGTCAAAAGTCTGTATTGTGAGCTCATAAATGTTTTTTTCGTTT
AAATAAAAATTTTTGTTTACTATATGCAATGATTAAATAATAAATTAAAA
CATTACAATATTTAAATTGCTAGGAAATAAAATTCAAAATTAAAAACAAA
TTGGAAACATGACACAAATAAATATAGTGTAAGAAAACTGAATCGCAATC
CTGTCGAGATAGCACAACCTAGCGTGTCATGCCAGCCCCAAAAGCATAAG
CAAAAGCAAATGGGAAAAGACGGTCAAAAAAATGTAACGACTTTCGACAT
CTGACGTCATTAGACTCTGGTAACGACAAGCCAAACCCTTCGTACATGCA
TCTTATGGATCGAGGAGTTATAGGGTTCTAATATAAGATATAATCTACCC
TTCCCACAATATTCACTTTTCTATAGATATCAACGAATGCCAGTTCAAGA
AGCAACCATGTGACCATTTCTGCACCAATCAGATTGGTTCTTTCAAATGC
TCTTGTAAAGATGGATACCTTCTTCAAAATGACAACAAGACGTGTAACGG
TAAGCTCAAATATTTGATAGATATCTGAAATTTTAAGATTATTTACTGAC
TGACCTTTTGAAAAGATTTTCTTTGTTCTTAGCCCTCTCCGTACCAATGT
TCAGTATATTTTTTATTGCAAAATTGCTTTGACAGGCCCAAGGCCTTATT
TGTCATTTTAAGACTGAATCAATAAACCTCAAGGGAGTCTAAACTTTCTA
AATCAATTTCCGAGTTTTCGCTTTGCAAATCTCGGAGTAGAGTATTGAGG
ACAAAACGATTAAGTCTTTCTGTGCCACTAGAAATTTAATGTGTCTCTCT
TTTGGGACAAGACTCTTAAAATATATATAGTGTTGAAGAACTCAATAACC
ACAAACAATGTCCATAAATTGAATATTTCAACGATTTTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034792XLOC_034792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055243-exon-scaffold_251-1575043694:736885..737272TCONS_00055243-exon-scaffold_251-1575043694:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:735528..735884TCONS_00055243-exon-scaffold_251-1575043694:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:734956..735090TCONS_00055243-exon-scaffold_251-1575043694:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:734128..734250TCONS_00055243-exon-scaffold_251-1575043694:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:733524..733646TCONS_00055243-exon-scaffold_251-1575043694:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:733130..733131TCONS_00055243-exon-scaffold_251-1575043694:733130..733131Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:736885..737272TCONS_00055243-exon-scaffold_251-1510915933:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:735528..735884TCONS_00055243-exon-scaffold_251-1510915933:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:734956..735090TCONS_00055243-exon-scaffold_251-1510915933:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:734128..734250TCONS_00055243-exon-scaffold_251-1510915933:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:733524..733646TCONS_00055243-exon-scaffold_251-1510915933:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:733130..733131TCONS_00055243-exon-scaffold_251-1510915933:733130..733131Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:736885..737272TCONS_00055243-exon-scaffold_251-1491911889:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:735528..735884TCONS_00055243-exon-scaffold_251-1491911889:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:734956..735090TCONS_00055243-exon-scaffold_251-1491911889:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:734128..734250TCONS_00055243-exon-scaffold_251-1491911889:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:733524..733646TCONS_00055243-exon-scaffold_251-1491911889:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:733130..733131TCONS_00055243-exon-scaffold_251-1491911889:733130..733131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:733130..737272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0479497	0.614452	0.0699569	0.111206	4.01063e-05	0.453692	4.53319e-05	0.525558	0.717883	0.205094	0	0	0.00652646	5.51412	1.56869	1.54568	0.536065	1.28087	2.00304	0.735674	2.70457	1.3739	0	1.05947	0.387888	9.10445e-07	1.58283	2.68325	3.5907	9.37903
Blast
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BLAST of TCONS_00055243 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.774e-31
Identity = 87/304 (28.62%), Postives = 138/304 (45.39%), Query Frame = 1 
Query:    7 GSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFAYKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGC-LDYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHFHASKKKRLGWYLGFQANIKQKDIDECALGLH-SCTQACINYPGGFFCGCYLGYHTVYQKDSRIAECVDKDECAIKNGG 912
            G+F++  FP+ YP      C+W IS T  ++     TS+ L             K+  C  DYVE+R+G    +P + R+CG+ +P P+ +T   L+V   +S        L    F  ++A      C   + +   +IQSP++P  Y+  ++C+W I   +G  + L F  F   E+++   C  DY+E+ +G       IG FCG   P+ + SS N++ + F +          GF AN   K++DEC+   H  C   C+N  G + C C  GY              DK  C +  GG
Sbjct:  360 GNFSAPGFPNGYPS--YSHCVWRISVTPGEKIVLNFTSMDLF------------KSRLCWYDYVEVRDGYWRKAPLLGRFCGDKIPEPLVSTDSRLWVEFRSS-----SNILGKGFFAAYEA-----TCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAF---EIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKA---GFAANFF-KEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELA----------ADKKMCEVACGG 622

HSP 2 Score: 98.2117 bits (243), Expect = 4.826e-22
Identity = 66/231 (28.57%), Postives = 114/231 (49.35%), Query Frame = 1 
Query:    1 VKGSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFA---YKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGC-LDYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHF 681
            V+G+  S N+P +YP   +R+C W IS+T      G +  LT  F++F +   +     +C  D++E+ +G   L+P + R+CG+  P P   +  S+++R ++    + K         GFQA   T+       +  T+       F    Y     C WVI ++ G  +EL F  F   E+++E  C  DY+E ++G  +S   +GRFCG+   ++I S+ + + I F
Sbjct:  783 VEGTLASPNWPDKYPS--RRECTWNISSTA-----GHRVKLT--FNEFEIEQHQ-----ECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRK---------GFQAVHSTECGGRLKAEVQTKELYSHAQFGDNNYPSEARCDWVIVAEDGYGVELTFRTF---EVEEEADCGYDYMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSLMIRF 987

HSP 3 Score: 93.5893 bits (231), Expect = 1.384e-20
Identity = 78/313 (24.92%), Postives = 126/313 (40.26%), Query Frame = 1 
Query:    7 GSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMF------------------------------TGFQADFKTDICSHHIKQFPTR----IQSPDFPFAYKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGCLDYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHFHASK--KKRLGWYLGFQANIKQKDIDECALGLHSCTQACINYPGGFFCGCYLGY 837
            G   S N+P  Y     ++C+W I+ ++          + L F  F +      +   C  DY+E+R+G    S  I  +CG   P  V ++S  L+++  + G + NK   +   F                               G++      +C      F T+    I SP +P  Y   ++C+W + +    +I L F  F L   D  +   D++E+  G     K  GRFCG+ +P+ I S  N +++ F +     KR     GF+A+    D DECA     C   C+N  G + C C  GY
Sbjct:  473 GQIQSPNYPDDY--RPSKECVWRITVSE-------GFHVGLTFQAFEI-----ERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDG-SINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCK--YDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEFKSDNTVSKR-----GFRAHFFS-DKDECAKDNGGCQHECVNTFGSYLCRCRNGY 762
The following BLAST results are available for this feature:
BLAST of TCONS_00055243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL25.774e-3128.62Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=... [more]
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