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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055242 ID=TCONS_00055242|Name=TCONS_00055242|organism=Clytia hemisphaerica|type=transcript|length=2540bpRun BLAST on NCBI protein sequence of TCONS_00055242-protein >TCONS_00055242-protein ID=TCONS_00055242-protein|Name=TCONS_00055242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp RLILKAMRHWESETCIKFVKKTKQVDFLHIYPGNGCCSYVGRRGGRQYLSRun BLAST on NCBI transcript from alignment at scaffold_251:731619..738982- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055242 ID=TCONS_00055242|Name=TCONS_00055242|organism=Clytia hemisphaerica|type=transcript|length=7364bp|location=Sequence derived from alignment at scaffold_251:731619..738982- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:731619..738982- >TCONS_00055242 ID=TCONS_00055242|Name=TCONS_00055242|organism=Clytia hemisphaerica|type=CDS|length=26565bp|location=Sequence derived from alignment at scaffold_251:731619..738982- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055242 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 6.604e-73 Identity = 166/496 (33.47%), Postives = 242/496 (48.79%), Query Frame = 1
Query: 1 RLILK-AMRHWESETCIKFVKKTKQVDFLHI-YPGNGCCSYVGRRGG-RQYLSLGRGCLRFGIVTHELGHAVGFWHEQNRPDRSIYIDVLYDNVDSSKFLNFDPRGMNEVNTFDQIYDYESIMHYGTRFFSKNDGKTIRAKEVGKNVNENTIGKSYYKFDGPVLSTQDILETNLLYKCTKITDCGGTLFAVKGSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFAYKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGCL-DYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHFHASKKKRLGWYLGFQANIKQKDIDECALGLH-SCTQACINYPGGFFCGCYLGYHTVYQKDSRIAECVDKDECAIKNGG 1473
R I K AMRHWE TC+ F+++T + F+ Y GCCSYVGRRGG Q +S+G+ C +FGIV HELGH VGFWHE RPDR ++ ++ +N+ + NF EV++ + YD++SIMHY FS+ N TIG+ LS DI + LYKC CG TL G+F++ FP+ YP C+W IS T ++ TS+ L K+ C DYVE+R+G +P + R+CG+ +P P+ +T L+V +S L F ++A C + + +IQSP++P Y+ ++C+W I +G + L F F E+++ C DY+E+ +G IG FCG P+ + SS N++ + F + GF AN K++DEC+ H C C+N G + C C GY DK C + GG
Sbjct: 177 RAIFKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVR------LSQGDIAQARKLYKCPA---CGETLQDTTGNFSAPGFPNGYPS--YSHCVWRISVTPGEKIVLNFTSMDLF------------KSRLCWYDYVEVRDGYWRKAPLLGRFCGDKIPEPLVSTDSRLWVEFRSS-----SNILGKGFFAAYEA-----TCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAF---EIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKA---GFAANFF-KEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELA----------ADKKMCEVACGG 622 HSP 2 Score: 100.908 bits (250), Expect = 1.292e-21 Identity = 68/242 (28.10%), Postives = 118/242 (48.76%), Query Frame = 1
Query: 529 KITDCGGTLFAVKGSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFA---YKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGC-LDYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHF 1242
K C + +V+G+ S N+P +YP +R+C W IS+T G + LT F++F + + +C D++E+ +G L+P + R+CG+ P P + S+++R ++ + K GFQA T+ + T+ F Y C WVI ++ G +EL F F E+++E C DY+E ++G +S +GRFCG+ ++I S+ + + I F
Sbjct: 772 KEAGCAHKISSVEGTLASPNWPDKYPS--RRECTWNISSTA-----GHRVKLT--FNEFEIEQHQ-----ECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRK---------GFQAVHSTECGGRLKAEVQTKELYSHAQFGDNNYPSEARCDWVIVAEDGYGVELTFRTF---EVEEEADCGYDYMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSLMIRF 987 HSP 3 Score: 86.2705 bits (212), Expect = 4.354e-17 Identity = 71/289 (24.57%), Postives = 131/289 (45.33%), Query Frame = 1
Query: 541 CGGTLFAVKGSFTSTNFPSRYPMDVKRDCIW-IISTTQTKERNGKKTSLTLIFDQFHV-GNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFT----------GFQA------------------------DFKTDICSHHIKQFPTRIQSPDFPFAYKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGCL-DYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHFH--ASKKKRLGWYLGFQA 1290
CGG + + G+ TS +P YP + ++C+W +++ Q + ++L F+ F + GN+ C+ D+VE+R G + R+CG+ P +T+ S ++ V S +K+ F+ G Q D K C+H I + SP++P Y ++C W I S G +++L F F E+++ + C D++E+++G + +GRFCG+ P ++S + + + F+ AS +++ GFQA
Sbjct: 620 CGGFITKLNGTITSPGWPKEYPTN--KNCVWQVVAPAQYR--------ISLQFEVFELEGNDV------CKYDFVEVRSGLSPDAKLHGRFCGSETPEVITSQSNNMRVEF-KSDNTVSKRGFRAHFFSDKDECAKDNGGCQHECVNTFGSYLCRCRNGYWLHENGHDCKEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEF---EIEQHQECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRK-----GFQA 883 HSP 4 Score: 83.9593 bits (206), Expect = 1.961e-16 Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 2050 EQHCGRTFNITHGRFRTPGYPFRYPDSQSCVWTLHSPKRQRMKLRFVHFGLEAHKECQYDYVIVEEHFYNMPAVKLIGRFCGNKNPPKMIIDGGRSYFKVKFHSDETMSGKGFKAIF 2400
E CG +G +PG+P YP +++CVW + +P + R+ L+F F LE + C+YD+V V P KL GRFCG++ P +I + +V+F SD T+S +GF+A F
Sbjct: 617 EVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCKYDFVEVRSGL--SPDAKLHGRFCGSETPE--VITSQSNNMRVEFKSDNTVSKRGFRAHF 729 The following BLAST results are available for this feature:
BLAST of TCONS_00055242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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