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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055240 ID=TCONS_00055240|Name=TCONS_00055240|organism=Clytia hemisphaerica|type=transcript|length=1280bp
ATTTTAGCCAATACTATACAACAAGTTAAAAAATCTCAACCTCATATTTC
GGAGATAAGtctaaaaatggcaaaaaacaATCATATCACACTTTAAGAGA
ATTCTACTAAAAGACAGAGGAAAAATGAGAATATCCCAGGTGAAGCTCAA
CAAAAAGCTTAAGTTTCCGCTAATCCATATCAAGCTTTTGGGAGGGGTTC
CCACCGGGTCTATGATACGGGAGTGTTGTTCATCTTTAcattcccttctc
acagacccggtagaattttttcaacCAGTGAGGATAAAAATACTCGATGA
GGATCGATTTTCCATAGTTTTTATAgcggatttcaatttttttgttttca
agtcagaaaattgagCGGGGATGGTAAAagtagcataatattttgcagtg
cggattggtttatttgattattttcagtgtggACAAAAATTGGAAGATAA
TTTTCCCCGGGGACgctattttggccaatttttccaatgagaagggttcc
cagtgggtctgtgatacGGTAGTGTTGtccatatttttcatgtaccaATT
GATGAGCTAATTTTTCCAATATGTGTAAACAAACTGACATGGAGTCGATG
CTCACTAAATCCAGGATCCATTATGTCAAGCATGTAAGGATATCCCCAAT
CTACTGGCAACTCATTATAAAACACTTTAAAGAACCCTGCAAAGACATCT
AAATAATGAGCTGGAATCAAGCGCCCGATAAAACCCATTTTATAATATTC
AGAGATAACCCAGGGCTTGTGTTTAAGGCGGGTTTCCTTTTCGCCCTTAA
AGATAACTGGTTCTTTATTTCGAGCGTTGTTCAAACGATTTATATCTTCC
ATGATCGTGTCAAAATATTGGTCATTGGCTAAAACATCGTCTTCAATTTG
TAAGTAATAATCGCACAGATTTTGAACGTATTGAAAAATGAAGGCGTAAT
CTAAACTCTGTTTTGATCGCCAATACATTCTTTCGCTTGTGTCATTAAAC
GTTGGTGTTAAATCATGGAGAGGAAGATAAAACCGTTTCGGGATTCCAAT
TATCCCGATTAAACCGGATCGGATTTCGTTTGGGAACAAGTCATTTAGCT
TTTGGTAGATGAACcgttttttattttcctctgtGTCAGCCAAAACCACG
AGAATATTGACTTGTCTTTTATCTTCTTTTGAGAGAGGTTTGATCAAAGA
TTTGATTGTGCGATCCAAGTAAAaggttgttttgtttttgtaaaatcgAT
AAACGGTGGGAATACCAATGAGTAAAGGAG Run BLAST on NCBI transcript from alignment at scaffold_251:722070..723650- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055240 ID=TCONS_00055240|Name=TCONS_00055240|organism=Clytia hemisphaerica|type=transcript|length=1581bp|location=Sequence derived from alignment at scaffold_251:722070..723650- (Clytia hemisphaerica)
ATTTTAGCCAATACTATACAACAAGTTAAAAAATCTCAACCTCATATTTC
GGAGATAAGTCTAAAAATGGCAAAAAACAATCATATCACACTTTAAGAGA
ATTCTACTAAAAGACAGAGGAAAAATGAGAATATCCCAGGTGAAGCTCAA
CAAAAAGCTTAAGTTTCCGCTAATCCATATCAAGCTTTTGGGAGGGGTTC
CCACCGGGTCTATGATACGGGAGTGTTGTTCATCTTTACATTCCCTTCTC
ACAGACCCGGTAGAATTTTTTCAACCAGTGAGGATAAAAATACTCGATGA
GGATCGATTTTCCATAGTTTTTATAGCGGATTTCAATTTTTTTGTTTTCA
AGTCAGAAAATTGAGCGGGGATGGTAAAAGTAGCATAATATTTTGCAGTG
CGGATTGGTTTATTTGATTATTTTCAGTGTGGACAAAAATTGGAAGATAA
TTTTCCCCGGGGACGCTATTTTGGCCAATTTTTCCAATGAGAAGGGTTCC
CAGTGGGTCTGTGATACGGTAGTGTTGTCCATATTTTTCATGTACCAATT
GATGAGCTAATTTTTCCAATATGTGTAAACAAACTGACATGGTCANGAGG
ATCGACTTTCCATAGTTTTTATAGCGGATTTCAATTCTTTTGTTTTCAAG
TCAGAAAATTGAGCGGGGATGGTAAAAGTAGCATAATATTTTGCAGTGCG
GATTGGTTTATTTGATTATTTTCAGTGTGATGGACGAAAATTGGAAGATA
ATTTTCCCTGGGGACGCTATTTTGGCCAATTTTTCGAATGAGAAGGGTTC
CCAGTGGGTCTGTGATACGGTAGTGTTGTCCATATTTTTCATGTACCAAT
TGATGAGCTAATTTTCCCAATATGTGTAAACAAACTGACATGGAGTCGAT
GCTCACTAAATCCAGGATCCATTATGTCAAGCATGTAAGGATATCCCCAA
TCTACTGGCAACTCATTATAAAACACTTTAAAGAACCCTGCAAAGACATC
TAAATAATGAGCTGGAATCAAGCGCCCGATAAAACCCATTTTATAATATT
CAGAGATAACCCAGGGCTTGTGTTTAAGGCGGGTTTCCTTTTCGCCCTTA
AAGATAACTGGTTCTTTATTTCGAGCGTTGTTCAAACGATTTATATCTTC
CATGATCGTGTCAAAATATTGGTCATTGGCTAAAACATCGTCTTCAATTT
GTAAGTAATAATCGCACAGATTTTGAACGTATTGAAAAATGAAGGCGTAA
TCTAAACTCTGTTTTGATCGCCAATACATTCTTTCGCTTGTGTCATTAAA
CGTTGGTGTTAAATCATGGAGAGGAAGATAAAACCGTTTCGGGATTCCAA
TTATCCCGATTAAACCGGATCGGATTTCGTTTGGGAACAAGTCATTTAGC
TTTTGGTAGATGAACCGTTTTTTATTTTCCTCTGTGTCAGCCAAAACCAC
GAGAATATTGACTTGTCTTTTATCTTCTTTTGAGAGAGGTTTGATCAAAG
ATTTGATTGTGCGATCCAAGTAAAAGGTTGTTTTGTTTTTGTAAAATCGA
TAAACGGTGGGAATACCAATGAGTAAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055240-exon-scaffold_251-1575043694:723063..723650 | TCONS_00055240-exon-scaffold_251-1575043694:723063..723650 | Clytia hemisphaerica | exon |
| TCONS_00055240-exon-scaffold_251-1575043694:722070..722761 | TCONS_00055240-exon-scaffold_251-1575043694:722070..722761 | Clytia hemisphaerica | exon |
| TCONS_00055240-exon-scaffold_251-1510915933:723063..723650 | TCONS_00055240-exon-scaffold_251-1510915933:723063..723650 | Clytia hemisphaerica | exon |
| TCONS_00055240-exon-scaffold_251-1510915933:722070..722761 | TCONS_00055240-exon-scaffold_251-1510915933:722070..722761 | Clytia hemisphaerica | exon |
| TCONS_00055240-exon-scaffold_251-1491911889:723063..723650 | TCONS_00055240-exon-scaffold_251-1491911889:723063..723650 | Clytia hemisphaerica | exon |
| TCONS_00055240-exon-scaffold_251-1491911889:722070..722761 | TCONS_00055240-exon-scaffold_251-1491911889:722070..722761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:722070..723650 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006759 | Glyco_transf_54 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00055240 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.228e-33 Identity = 90/270 (33.33%), Postives = 137/270 (50.74%), Query Frame = -3
Query: 505 LLIGIPTVYRFYKNKTTFYLDRTIKSLIKPLSKEDKRQVNILVVLADTEENKKRFIYQKLNDLFPNEIRSGLIGIIGIPKRFYLPLHDLTPTFNDTSERMYWRSKQSLDYAFIFQYVQNLCDYYLQIEDDVLANDQYFDTIMEDINRLNNARNKEPVIFKGEKETRLKHKPWVISEYYKMGFIGRLIPAHYLDVFAGFFKVFYNELPVDWGYPYML--DIMDPGF-SEH----------RLHVSLFTHIGKISSSIGT*KIWTTLPYHRP 1275
+++GIPTV R K+ YL T+ SLI L E+K I+V + +T+ + + L F EI SGL+ +I P+ +Y L +L TF D+ ER+ WR+KQ+LDY F+ Y Q YY+Q+EDD++ YF+TI N A +L + W+I E+ ++GFIG++ A L + F +FY E P+DW ++L + +P ++H R SLF H+G SS G + T Y +P
Sbjct: 137 IVMGIPTVKREVKS----YLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIK------NFA-------------LQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKP 383
The following BLAST results are available for this feature:
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