TCONS_00055220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055220
Unique NameTCONS_00055220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055220 ID=TCONS_00055220|Name=TCONS_00055220|organism=Clytia hemisphaerica|type=transcript|length=1322bp
ctacaacaacaacgaccacccctacgacaacaacgaccacccctacgACA
AGAACGACCACCCCTacgacaacaacgaccacccctacgacaacaacgac
cacccctacgacaacaacgaccacccctacgacaacaacaaccaccccta
cgacaacaacgaccacccctacgacaacaacgaccacccctacgACAACA
ACTACAATCACTACACCTCCCACAACAATGAACCAACCAACTTCAATGAT
CTCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAA
TGAATGCTCCTAGATCAACGACATCTTTAAAAACAACAACCAAATCATCT
TCAACTACAACAAGGATAACAACACCGAGACCAgCATCGATCAATGGTGG
ATGGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACGTGCGGAAAGC
AAaggatgaaaacaaaagaaagaaaatgcgATCAACCTTCTCCACAAAAT
GGTGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAA
CGTCCCTTGTCCAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCG
AAGAAACAAATTCATTGTGCGGCGAAGGTGtgaaaagaagacattgcatt
gaaggTGTCTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAAT
TTGTAATCTCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTT
GTCATTTGGAAGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTGCCGTtg
gatattttcaaatcacttgacattcattgttttgattggagTATCGGACA
ATCTTCAATTACACCTTATTTTGATAATTCCACAAAACGTTGTTATGGTT
TGATTGAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGATGACCAG
CAAAGACTTTGCAAATGTATCGAGAAAGctGATATAACAGAGGGGAAATG
GTCATCGTGGACCGAATGTTCAGCTTCTTGCAATGGTCAAAAAACAAGAC
ACAGAATTTGTGATTTTGATGATCCCGATTTTCAATGTACCACTCAAACA
CAAAATGAAGATTGCTCAGCGCCATGTCCTGtgaATGGAGGTTTGAGTTC
TTGGAGCTATTGGGAGGAGTGCACCAAAACATGTGGAGGAGGGCGACAAC
ATCGTTATCGATACTGTACAAGTCCTTCACCCTCCAACGGAGGTGCTTTT
TGTGTTGGTCTATTCAATCAATCCAGGATATGTGGTGTCGGAAAGTGTCC
AGGTACATATTGAATCGTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00055220-protein

>TCONS_00055220-protein ID=TCONS_00055220-protein|Name=TCONS_00055220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
TTTTTTPTTTTTTPTTRTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT
TTTTTPTTTTTTPTTTTTITTPPTTMNQPTSMISPTTKTTPASTTSSTAM
NAPRSTTSLKTTTKSSSTTTRITTPRPASINGGWSDWGNWSECTPTCGKQ
RMKTKERKCDQPSPQNGGLLCAGISIEHTQCENVPCPGVWGPWSSCQSSE
ETNSLCGEGVKRRHCIEGVCVGNDTEICQIGGICNLISPAPFGMNCSNFC
HLEGKACDKEGFVVPLDIFKSLDIHCFDWSIGQSSITPYFDNSTKRCYGL
IEQKEVDCQSTPNDDQQRLCKCIEKADITEGKWSSWTECSASCNGQKTRH
RICDFDDPDFQCTTQTQNEDCSAPCPVNGGLSSWSYWEECTKTCGGGRQH
RYRYCTSPSPSNGGAFCVGLFNQSRICGVGKCPGTY
Run BLAST on NCBI

transcript from alignment at scaffold_251:277175..281091-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055220 ID=TCONS_00055220|Name=TCONS_00055220|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at scaffold_251:277175..281091- (Clytia hemisphaerica)
CTACAACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACA
AGAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAACGAC
CACCCCTACGACAACAACGACCACCCCTACGACAACAACAACCACCCCTA
CGACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACA
ACTACAATCACTACACCTCCCACAACAATGAACCAACCAACTTCAATGAT
CTCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAA
TGAATGCTCCTAGATCAACGACATCTTTAAAAACAACAACCAAATCATCT
TCAACTACAACAAGGATAACAACACCGAGACCAGGTTTGTTAAAATTTTC
AAATACAGTTTACGCTCTCTATCCATTATTCGATAATATTAAAAGTCTAT
TCGATACGCTTCCGTATTCGATTAAAATCCCATTCCCATTGAAAATCAAA
TGAGAGAGCGCCAACTGTACACTTTTTGTCTCGTATATAGTCCCTTTAAA
AGCTTTGGTCTGATGAATAAGATGCATTTGGCTCTTCCAGAAAATATCCA
TACATGGGGGGGGGGTGGAGGATATATTGTCCGGGGGGGGTAGCAAAAAA
TCATCAAATTTTGCCTTGTCCGGGGGTAAATTTGCTCTGTCCGGGGGGTC
AACTGATGCTTGTCCGGGATAAAACCCGTTGTCCGGGGGTGTAAATCACT
AAAAAAAGTATCCTTGCTGAAAATTGTTATATCCTCCACCCCCATATTCA
AATTTTTTCTGGAAAAGCCCATTGTTTTCACATTGTGTTAATTTAATTTC
ACAACTGGGTGATATGCTCCTTTTTGGACCTACCTCGGAGGTCCTAAAAA
TTAACTCATGTCCGTTCGTTCGTTTGTTACGAGCTTTTCTCAGGTAAAAA
CTGCCTAAAAATAGGTTTTTTTGGACTTTGAGCGGAATTGCTTCGAAAGC
TTTTTCTCAAACTTTGCACAAAGAGACAGACTGTAAGGCTCTCTAAAATT
TGGCTGCCATTAATTTTTCCCGAAAAAATCTTATTCGCCTTAAATGACGC
ACTTTTTTTTTCTGGGGAAATTCCCGTTAGTTACTTTTATGGAAAATGAG
TATGTCTTGCGATTGGCTTGTAAAATGATAATTTTTTCAAATCTGATGGA
GCCAAATTTTTCAAAATTGGGCCAAAAAATGTGCCCAAAAATGTGTTTTT
TTTGGACTTTGTGTGATATTGCTTTATTAATTCTTTCTGATTTTTTTGCA
TCAAAACAGAGAGCAAGGTTCTCTAAAATGTAAACCTTTTTANTCTGATG
TTTTTGCATCAAAACAGGTTCTCTGAAACCTTGAAACCTTTTTTCCTCGA
AAGTTTTTTTGGCTGTAAAAATCGGATTTTCTTATTTAGGGAAAATGTGC
TTGGCTTTGTTATTTTTTCTGATTTTTTGCACAATGATGTAAAATGGTAA
TATTTCAAATCTGATGGAGCCCGCACCTTGAAAAAATAAATTTTGGGTAA
ATTTGGGCCAGCCTAAAAATTAGGATTTTTGGATTTTGTGTGAAATTGCT
TCATTTATTTCTTTACTGATTTTTTGCATAAGGTTCTCTTAAAAGTTGCT
AAACCCGTGTTTCCTGGTCGTAAAAATTTGATTTTTGTATTGGGGAAAAT
TCCCTTCTGTCATTTTTAAGGAAAAAGAACATTTCTCGCGACTGGCTTGG
TATTGTTTTATGATTTCTTAGTTTGCATTTTCTTATTATTGTTGCCATAC
CTTCAATTTTCTTTAAATTACATTAGCCATTCAGCATGTAGCTTGTTTCC
TGTTTTTCATCGCTCAAAATAAACAAATAAGTTTATCCATTTAGCATCGA
TCAATGGTGGATGGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACG
TGCGGAAAGCAAAGGATGAAAACAAAAGAAAGAAAATGCGATCAACCTTC
TCCACAAAATGGTGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTC
AATGTGAAAACGTCCCTTGTCCAGGTGATAATCATTTTCTTTCAGCTCCC
CAAAAAACGAAAGTGAAAGTGAAAGCGAAAGCGAAAGCGAAAGCGAATTC
TAAAGTTTATGTTGATTATGATTGACTTTTGTTTTGGTACGATTTTTTTA
CTTTAACTAATCACTGCGATCAAAGGCTTAGAATGTAATTCAAGACCTTT
TGATAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAAGAAACA
AATTCATTGTGCGGCGAAGGTGTGAAAAGAAGACATTGCATTGAAGGTGT
CTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAATTTGTAATC
TCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTTGTCATTTG
GAAGGTATGTAAAAATTGGATCATAGGCAAGATTAAATTTAAAGGACCAT
GCGATTTTACTAACAACTCTCTGAATTGAAAAACATTTGTGGCATACAGC
TTCAAAAAATGTTTCTTTTGAAATTTTACAAAGTATTTCTAAAAACGTTT
TTTCTTTCTCGAAAACATTTTAAACGAATAATTCATGGGTATTGAACCAT
TTGAACGATCTAATGGAATTCATTGTCGAGATCGTCAGACATTTTAAAAC
CTGCGCCATAGGCAAACTAAAACTAATTTCAATATAGAACTGTCTTTCCA
AAATCTGCCTTGTTATAGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTG
CCGTTGGATATTTTCAAATCACTTGACATTCATTGTTTTGATTGGAGTAT
CGGACAATCTTCAATTACACCTTATTTTGATAATTCCACAAAACGTTGTT
ATGGTTTGATTGAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGAT
GACCAGCAAAGACTTTGCAAATGTATCGAGAAAGGTAGGTGAACTTGGTG
AACTGTTTGACTTTTGATTACATTCTAGATGTTTTCAAAGACGAATCAGT
TGAAAAATTTTACAACGAACGAACGAACGAACGAACGAACGAACGAACGA
ACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAAC
GAACGAACGAACGAACGATTAATTAATAAACGAAATAACATTATCTTTTT
CTTTTCAGCTGATATAACAGAGGGGAAATGGTCATCGTGGACCGAATGTT
CAGCTTCTTGCAATGGTCAAAAAACAAGACACAGAATTTGTGATTTTGAT
GATCCCGATTTTCAATGTACCACTCAAACACAAAATGAAGATTGCTCAGC
GCCATGTCCTGGTAGGTTTAAACTTGTTCAACTCTGATCTATTATTTTCC
ATGACTCTGATTAGAAAAATAACAATTCAAAATAGATGAATGAGACTTTA
AAAGCTCTAAAACGTCCTAAAAAGACAGCCCCTTCTAACAGGCCCAGCAG
GATTTTTCTGCAAGTGGGGAAAAACGGATATCGATATCCCCATGTTTTTT
TTATAGCTGGTCCATTGTTTTCAATCAGAGTTGGGATGGAAAAAGTAACA
CAATATTTTGCAGTGAGGAGCAAGCGAGGTCGTTGCGTTGACTTCGGGTA
ATGTATCTCCCTACAGCCCTCACTAACCGGTCATTATTGTATTAGAACAT
ACATCAACATTTCTTTTCTTTTTTAGTGAATGGAGGTTTGAGTTCTTGGA
GCTATTGGGAGGAGTGCACCAAAACATGTGGAGGAGGGCGACAACATCGT
TATCGATACTGTACAAGTCCTTCACCCTCCAACGGAGGTGCTTTTTGTGT
TGGTCTATTCAATCAATCCAGGATATGTGGTGTCGGAAAGTGTCCAGGTA
CATATTGAATCGTAAAA

Coding sequence (CDS) from alignment at scaffold_251:277175..281091-

>TCONS_00055220 ID=TCONS_00055220|Name=TCONS_00055220|organism=Clytia hemisphaerica|type=CDS|length=7866bp|location=Sequence derived from alignment at scaffold_251:277175..281091- (Clytia hemisphaerica)
TGAATGGAGGTTTGAGTTCTTGGAGCTATTGGGAGGAGTGCACCAAAACA
TGTGGAGGAGGGCGACAACATCGTTATCGATACTGTACAAGTCCTTCACC
CTCCAACGGAGGTGCTTTTTGTGTTGGTCTATTCAATCAATCCAGGATAT
GTGGTGTCGGAAAGTGTCCAGGTACATATTGACTGATATAACAGAGGGGA
AATGGTCATCGTGGACCGAATGTTCAGCTTCTTGCAATGGTCAAAAAACA
AGACACAGAATTTGTGATTTTGATGATCCCGATTTTCAATGTACCACTCA
AACACAAAATGAAGATTGCTCAGCGCCATGTCCTGGCAAAGCATGTGACA
AAGAGGGGTTCGTCGTGCCGTTGGATATTTTCAAATCACTTGACATTCAT
TGTTTTGATTGGAGTATCGGACAATCTTCAATTACACCTTATTTTGATAA
TTCCACAAAACGTTGTTATGGTTTGATTGAGCAAAAAGAAGTCGATTGTC
AATCCACACCTAATGATGACCAGCAAAGACTTTGCAAATGTATCGAGAAA
GGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAAGAAACAAATTC
ATTGTGCGGCGAAGGTGTGAAAAGAAGACATTGCATTGAAGGTGTCTGTG
TTGGCAATGATACTGAAATATGTCAAATTGGTGGAATTTGTAATCTCATC
TCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTTGTCATTTGGAAGC
ATCGATCAATGGTGGATGGAGTGATTGGGGAAATTGGAGTGAATGCACGC
CAACGTGCGGAAAGCAAAGGATGAAAACAAAAGAAAGAAAATGCGATCAA
CCTTCTCCACAAAATGGTGGACTCCTGTGTGCTGGAATCAGTATTGAACA
CACTCAATGTGAAAACGTCCCTTGTCCAGACAACAACAACGACCACCCCT
ACGACAACAACGACCACCCCTACGACAAGAACGACCACCCCTACGACAAC
AACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAACGACCA
CCCCTACGACAACAACAACCACCCCTACGACAACAACGACCACCCCTACG
ACAACAACGACCACCCCTACGACAACAACTACAATCACTACACCTCCCAC
AACAATGAACCAACCAACTTCAATGATCTCTCCTACGACAAAAACCACCC
CTGCATCAACTACCTCTTCTACAGCAATGAATGCTCCTAGATCAACGACA
TCTTTAAAAACAACAACCAAATCATCTTCAACTACAACAAGGATAACAAC
ACCGAGACCAGTGAATGGAGGTTTGAGTTCTTGGAGCTATTGGGAGGAGT
GCACCAAAACATGTGGAGGAGGGCGACAACATCGTTATCGATACTGTACA
AGTCCTTCACCCTCCAACGGAGGTGCTTTTTGTGTTGGTCTATTCAATCA
ATCCAGGATATGTGGTGTCGGAAAGTGTCCAGGTACATATTGACTGATAT
AACAGAGGGGAAATGGTCATCGTGGACCGAATGTTCAGCTTCTTGCAATG
GTCAAAAAACAAGACACAGAATTTGTGATTTTGATGATCCCGATTTTCAA
TGTACCACTCAAACACAAAATGAAGATTGCTCAGCGCCATGTCCTGGCAA
AGCATGTGACAAAGAGGGGTTCGTCGTGCCGTTGGATATTTTCAAATCAC
TTGACATTCATTGTTTTGATTGGAGTATCGGACAATCTTCAATTACACCT
TATTTTGATAATTCCACAAAACGTTGTTATGGTTTGATTGAGCAAAAAGA
AGTCGATTGTCAATCCACACCTAATGATGACCAGCAAAGACTTTGCAAAT
GTATCGAGAAAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAA
GAAACAAATTCATTGTGCGGCGAAGGTGTGAAAAGAAGACATTGCATTGA
AGGTGTCTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAATTT
GTAATCTCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTTGT
CATTTGGAAGCATCGATCAATGGTGGATGGAGTGATTGGGGAAATTGGAG
TGAATGCACGCCAACGTGCGGAAAGCAAAGGATGAAAACAAAAGAAAGAA
AATGCGATCAACCTTCTCCACAAAATGGTGGACTCCTGTGTGCTGGAATC
AGTATTGAACACACTCAATGTGAAAACGTCCCTTGTCCAGACAACAACAA
CGACCACCCCTACGACAACAACGACCACCCCTACGACAAGAACGACCACC
CCTACGACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGAC
AACAACGACCACCCCTACGACAACAACAACCACCCCTACGACAACAACGA
CCACCCCTACGACAACAACGACCACCCCTACGACAACAACTACAATCACT
ACACCTCCCACAACAATGAACCAACCAACTTCAATGATCTCTCCTACGAC
AAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAATGAATGCTCCTA
GATCAACGACATCTTTAAAAACAACAACCAAATCATCTTCAACTACAACA
AGGATAACAACACCGAGACCAGTGAATGGAGGTTTGAGTTCTTGGAGCTA
TTGGGAGGAGTGCACCAAAACATGTGGAGGAGGGCGACAACATCGTTATC
GATACTGTACAAGTCCTTCACCCTCCAACGGAGGTGCTTTTTGTGTTGGT
CTATTCAATCAATCCAGGATATGTGGTGTCGGAAAGTGTCCAGGTACATA
TTGACTGATATAACAGAGGGGAAATGGTCATCGTGGACCGAATGTTCAGC
TTCTTGCAATGGTCAAAAAACAAGACACAGAATTTGTGATTTTGATGATC
CCGATTTTCAATGTACCACTCAAACACAAAATGAAGATTGCTCAGCGCCA
TGTCCTGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTGCCGTTGGATAT
TTTCAAATCACTTGACATTCATTGTTTTGATTGGAGTATCGGACAATCTT
CAATTACACCTTATTTTGATAATTCCACAAAACGTTGTTATGGTTTGATT
GAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGATGACCAGCAAAG
ACTTTGCAAATGTATCGAGAAAGGTGTATGGGGTCCTTGGTCAAGTTGTC
AATCAAGCGAAGAAACAAATTCATTGTGCGGCGAAGGTGTGAAAAGAAGA
CATTGCATTGAAGGTGTCTGTGTTGGCAATGATACTGAAATATGTCAAAT
TGGTGGAATTTGTAATCTCATCTCTCCGGCTCCTTTTGGAATGAATTGTT
CAAACTTTTGTCATTTGGAAGCATCGATCAATGGTGGATGGAGTGATTGG
GGAAATTGGAGTGAATGCACGCCAACGTGCGGAAAGCAAAGGATGAAAAC
AAAAGAAAGAAAATGCGATCAACCTTCTCCACAAAATGGTGGACTCCTGT
GTGCTGGAATCAGTATTGAACACACTCAATGTGAAAACGTCCCTTGTCCA
GACAACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAA
GAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAACGACC
ACCCCTACGACAACAACGACCACCCCTACGACAACAACAACCACCCCTAC
GACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAA
CTACAATCACTACACCTCCCACAACAATGAACCAACCAACTTCAATGATC
TCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAAT
GAATGCTCCTAGATCAACGACATCTTTAAAAACAACAACCAAATCATCTT
CAACTACAACAAGGATAACAACACCGAGACCAGTGAATGGAGGTTTGAGT
TCTTGGAGCTATTGGGAGGAGTGCACCAAAACATGTGGAGGAGGGCGACA
ACATCGTTATCGATACTGTACAAGTCCTTCACCCTCCAACGGAGGTGCTT
TTTGTGTTGGTCTATTCAATCAATCCAGGATATGTGGTGTCGGAAAGTGT
CCAGGTACATATTGACTGATATAACAGAGGGGAAATGGTCATCGTGGACC
GAATGTTCAGCTTCTTGCAATGGTCAAAAAACAAGACACAGAATTTGTGA
TTTTGATGATCCCGATTTTCAATGTACCACTCAAACACAAAATGAAGATT
GCTCAGCGCCATGTCCTGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTG
CCGTTGGATATTTTCAAATCACTTGACATTCATTGTTTTGATTGGAGTAT
CGGACAATCTTCAATTACACCTTATTTTGATAATTCCACAAAACGTTGTT
ATGGTTTGATTGAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGAT
GACCAGCAAAGACTTTGCAAATGTATCGAGAAAGGTGTATGGGGTCCTTG
GTCAAGTTGTCAATCAAGCGAAGAAACAAATTCATTGTGCGGCGAAGGTG
TGAAAAGAAGACATTGCATTGAAGGTGTCTGTGTTGGCAATGATACTGAA
ATATGTCAAATTGGTGGAATTTGTAATCTCATCTCTCCGGCTCCTTTTGG
AATGAATTGTTCAAACTTTTGTCATTTGGAAGCATCGATCAATGGTGGAT
GGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACGTGCGGAAAGCAA
AGGATGAAAACAAAAGAAAGAAAATGCGATCAACCTTCTCCACAAAATGG
TGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAACG
TCCCTTGTCCAGACAACAACAACGACCACCCCTACGACAACAACGACCAC
CCCTACGACAAGAACGACCACCCCTACGACAACAACGACCACCCCTACGA
CAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAACA
ACCACCCCTACGACAACAACGACCACCCCTACGACAACAACGACCACCCC
TACGACAACAACTACAATCACTACACCTCCCACAACAATGAACCAACCAA
CTTCAATGATCTCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCT
TCTACAGCAATGAATGCTCCTAGATCAACGACATCTTTAAAAACAACAAC
CAAATCATCTTCAACTACAACAAGGATAACAACACCGAGACCAGTGAATG
GAGGTTTGAGTTCTTGGAGCTATTGGGAGGAGTGCACCAAAACATGTGGA
GGAGGGCGACAACATCGTTATCGATACTGTACAAGTCCTTCACCCTCCAA
CGGAGGTGCTTTTTGTGTTGGTCTATTCAATCAATCCAGGATATGTGGTG
TCGGAAAGTGTCCAGGTACATATTGACTGATATAACAGAGGGGAAATGGT
CATCGTGGACCGAATGTTCAGCTTCTTGCAATGGTCAAAAAACAAGACAC
AGAATTTGTGATTTTGATGATCCCGATTTTCAATGTACCACTCAAACACA
AAATGAAGATTGCTCAGCGCCATGTCCTGGCAAAGCATGTGACAAAGAGG
GGTTCGTCGTGCCGTTGGATATTTTCAAATCACTTGACATTCATTGTTTT
GATTGGAGTATCGGACAATCTTCAATTACACCTTATTTTGATAATTCCAC
AAAACGTTGTTATGGTTTGATTGAGCAAAAAGAAGTCGATTGTCAATCCA
CACCTAATGATGACCAGCAAAGACTTTGCAAATGTATCGAGAAAGGTGTA
TGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAAGAAACAAATTCATTGTG
CGGCGAAGGTGTGAAAAGAAGACATTGCATTGAAGGTGTCTGTGTTGGCA
ATGATACTGAAATATGTCAAATTGGTGGAATTTGTAATCTCATCTCTCCG
GCTCCTTTTGGAATGAATTGTTCAAACTTTTGTCATTTGGAAGCATCGAT
CAATGGTGGATGGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACGT
GCGGAAAGCAAAGGATGAAAACAAAAGAAAGAAAATGCGATCAACCTTCT
CCACAAAATGGTGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCA
ATGTGAAAACGTCCCTTGTCCAGACAACAACAACGACCACCCCTACGACA
ACAACGACCACCCCTACGACAAGAACGACCACCCCTACGACAACAACGAC
CACCCCTACGACAACAACGACCACCCCTACGACAACAACGACCACCCCTA
CGACAACAACAACCACCCCTACGACAACAACGACCACCCCTACGACAACA
ACGACCACCCCTACGACAACAACTACAATCACTACACCTCCCACAACAAT
GAACCAACCAACTTCAATGATCTCTCCTACGACAAAAACCACCCCTGCAT
CAACTACCTCTTCTACAGCAATGAATGCTCCTAGATCAACGACATCTTTA
AAAACAACAACCAAATCATCTTCAACTACAACAAGGATAACAACACCGAG
ACCAGTGAATGGAGGTTTGAGTTCTTGGAGCTATTGGGAGGAGTGCACCA
AAACATGTGGAGGAGGGCGACAACATCGTTATCGATACTGTACAAGTCCT
TCACCCTCCAACGGAGGTGCTTTTTGTGTTGGTCTATTCAATCAATCCAG
GATATGTGGTGTCGGAAAGTGTCCAGGTACATATTGACTGATATAACAGA
GGGGAAATGGTCATCGTGGACCGAATGTTCAGCTTCTTGCAATGGTCAAA
AAACAAGACACAGAATTTGTGATTTTGATGATCCCGATTTTCAATGTACC
ACTCAAACACAAAATGAAGATTGCTCAGCGCCATGTCCTGGCAAAGCATG
TGACAAAGAGGGGTTCGTCGTGCCGTTGGATATTTTCAAATCACTTGACA
TTCATTGTTTTGATTGGAGTATCGGACAATCTTCAATTACACCTTATTTT
GATAATTCCACAAAACGTTGTTATGGTTTGATTGAGCAAAAAGAAGTCGA
TTGTCAATCCACACCTAATGATGACCAGCAAAGACTTTGCAAATGTATCG
AGAAAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAAGAAACA
AATTCATTGTGCGGCGAAGGTGTGAAAAGAAGACATTGCATTGAAGGTGT
CTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAATTTGTAATC
TCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTTGTCATTTG
GAAGCATCGATCAATGGTGGATGGAGTGATTGGGGAAATTGGAGTGAATG
CACGCCAACGTGCGGAAAGCAAAGGATGAAAACAAAAGAAAGAAAATGCG
ATCAACCTTCTCCACAAAATGGTGGACTCCTGTGTGCTGGAATCAGTATT
GAACACACTCAATGTGAAAACGTCCCTTGTCCAGACAACAACAACGACCA
CCCCTACGACAACAACGACCACCCCTACGACAAGAACGACCACCCCTACG
ACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAAC
GACCACCCCTACGACAACAACAACCACCCCTACGACAACAACGACCACCC
CTACGACAACAACGACCACCCCTACGACAACAACTACAATCACTACACCT
CCCACAACAATGAACCAACCAACTTCAATGATCTCTCCTACGACAAAAAC
CACCCCTGCATCAACTACCTCTTCTACAGCAATGAATGCTCCTAGATCAA
CGACATCTTTAAAAACAACAACCAAATCATCTTCAACTACAACAAGGATA
ACAACACCGAGACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034776XLOC_034776Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055220-proteinTCONS_00055220-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055220-exon-scaffold_251-1575043694:280708..281091TCONS_00055220-exon-scaffold_251-1575043694:280708..281091Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1575043694:279018..279197TCONS_00055220-exon-scaffold_251-1575043694:279018..279197Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1575043694:278638..278835TCONS_00055220-exon-scaffold_251-1575043694:278638..278835Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1575043694:278108..278323TCONS_00055220-exon-scaffold_251-1575043694:278108..278323Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1575043694:277731..277883TCONS_00055220-exon-scaffold_251-1575043694:277731..277883Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1575043694:277175..277365TCONS_00055220-exon-scaffold_251-1575043694:277175..277365Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:280708..281091TCONS_00055220-exon-scaffold_251-1510915933:280708..281091Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:279018..279197TCONS_00055220-exon-scaffold_251-1510915933:279018..279197Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:278638..278835TCONS_00055220-exon-scaffold_251-1510915933:278638..278835Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:278108..278323TCONS_00055220-exon-scaffold_251-1510915933:278108..278323Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:277731..277883TCONS_00055220-exon-scaffold_251-1510915933:277731..277883Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1510915933:277175..277365TCONS_00055220-exon-scaffold_251-1510915933:277175..277365Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:280708..281091TCONS_00055220-exon-scaffold_251-1491911889:280708..281091Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:279018..279197TCONS_00055220-exon-scaffold_251-1491911889:279018..279197Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:278638..278835TCONS_00055220-exon-scaffold_251-1491911889:278638..278835Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:278108..278323TCONS_00055220-exon-scaffold_251-1491911889:278108..278323Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:277731..277883TCONS_00055220-exon-scaffold_251-1491911889:277731..277883Clytia hemisphaericaexon
TCONS_00055220-exon-scaffold_251-1491911889:277175..277365TCONS_00055220-exon-scaffold_251-1491911889:277175..277365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:277175..281091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0681806	0	0	0	0.0886592	0.351773	0.0929613	0.0120865	0.188028	0.0708405	0.0322944	0.0099091	2.50412	3.48865	1.84333	2.15771	3.84782	2.88548	3.30671	5.73715	0.787908	0.28554	0.316746	0.326401	1.44707	0.191901	1.27213	0.233232	0	0.387373
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00055220 vs. Swiss-Prot (Human)
Match: SEM5B (Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 2.418e-22
Identity = 93/343 (27.11%), Postives = 142/343 (41.40%), Query Frame = 3 
Query:  399 GWSDWGNWSECTPTCGKQRMKTKERKCDQPSPQNGGLLCAGISIEHTQC-ENVPCP-----GVWGPWSSCQSSEETNSLCGEGV--KRRHCIEG-VCVGNDTEICQIGGICNLISPAPFGMNCSNFCHLEGKACDKEGFV-----------VPLDIFK--SLDIHCFDWSIGQSSITPYFDNSTKRCYGL-IEQKEVDCQSTPND-----DQQRLCKCIEKADITE--------GKWSSWTECSASCN-GQKTRHRICDFDDPD---FQCT-TQTQNEDCSA-PCPVNGGLSSWSYWEECTKTCGGGRQHRYRYCTSPSPSNGGAFCVGLFNQSRICGVGKCP 1301
             W+ W +W+ C+ +CG    + ++R C  P+P++GG +C G S E   C EN PCP       WG WS C S+      CG G+  +RR C  G  C+G                           C +E K C+ EG             +P+++ +  +     F ++       P+         GL   ++  + ++ P D     D   L + + ++  T           W  W+ CS  C  G + R R C   +P      C     + +DC+   CPV G  S W+ W  C+ +CGGG   R R CTSP+PS G   C+GL  +  +C    CP
Sbjct:  666 AWTPWSSWALCSTSCGIG-FQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSN------CGGGMQSRRRACENGNSCLG---------------------------CGVEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLADPH---------GLQFGRRRTETRTCPADGSGSCDTDALVEVLLRSGSTSPHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACP 965
The following BLAST results are available for this feature:
BLAST of TCONS_00055220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5B2.418e-2227.11Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4[more]
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