TCONS_00055220-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055220-protein
Unique NameTCONS_00055220-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055220-protein ID=TCONS_00055220-protein|Name=TCONS_00055220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
TTTTTTPTTTTTTPTTRTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT
TTTTTPTTTTTTPTTTTTITTPPTTMNQPTSMISPTTKTTPASTTSSTAM
NAPRSTTSLKTTTKSSSTTTRITTPRPASINGGWSDWGNWSECTPTCGKQ
RMKTKERKCDQPSPQNGGLLCAGISIEHTQCENVPCPGVWGPWSSCQSSE
ETNSLCGEGVKRRHCIEGVCVGNDTEICQIGGICNLISPAPFGMNCSNFC
HLEGKACDKEGFVVPLDIFKSLDIHCFDWSIGQSSITPYFDNSTKRCYGL
IEQKEVDCQSTPNDDQQRLCKCIEKADITEGKWSSWTECSASCNGQKTRH
RICDFDDPDFQCTTQTQNEDCSAPCPVNGGLSSWSYWEECTKTCGGGRQH
RYRYCTSPSPSNGGAFCVGLFNQSRICGVGKCPGTY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034776XLOC_034776Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055220TCONS_00055220Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 188..235
e-value: 2.0
score: 6.6
coord: 330..376
e-value: 8.9E-7
score: 38.5
coord: 134..187
e-value: 1.4E-7
score: 41.2
coord: 381..433
e-value: 2.5E-14
score: 63.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 135..186
e-value: 7.0E-7
score: 29.3
coord: 332..374
e-value: 3.1E-4
score: 20.8
coord: 382..432
e-value: 2.6E-10
score: 40.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 377..432
e-value: 1.0E-14
score: 54.1
coord: 130..186
e-value: 3.2E-13
score: 49.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 324..376
e-value: 4.2E-6
score: 26.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 327..376
score: 9.987
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 378..433
score: 12.398
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 131..187
score: 11.663
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 130..181
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 374..432
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 331..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..133

Blast
[Close]
BLAST of TCONS_00055220-protein vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 4.737e-16
Identity = 40/110 (36.36%), Postives = 65/110 (59.09%), Query Frame = 0 
Query:  333 WSSWTECSASCN-GQKTRHRICDFDDPDFQ----CTTQTQNEDCS-APCPVNGGLSSWSYWEECTKTCGGGRQHRYRYCTSPSPSNGGAFCVGLFNQSRICGVGKCPGTY 436
            W+SW++CS  C+ G + R R+C+  +P +          + ++C+  PCPV+G  S WS W +C+ TCGGG   R R C++P+P+ GG  C+GL  +  +C    CP ++
Sbjct:  790 WTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPESW 899
The following BLAST results are available for this feature:
BLAST of TCONS_00055220-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A4.737e-1636.36Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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