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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055196 ID=TCONS_00055196|Name=TCONS_00055196|organism=Clytia hemisphaerica|type=transcript|length=339bp
aacaaaaattttctggaagagcacAATATACATTTATGGGACATTTATAC
AATAACACTAAACACAGGGAGTAGGCTCGAGTTTACTAGGATCAAAAAAC
TATATTAAGCTTAAATATGTGATTGTGTAGGTGTAAATAAAAAGGATATA
TGACGCCATTCGACCCTGGTAAACTCAGACCTAGTCCTTATTTTTACAAG
GTTTTCTTGATACATTTGATTATTGAAGATGCGGTTCACACGACAAGGCG
ATGTGGTGATTGGTCTGTCCATGGTTTTATTTTCACTCATCTGTTCATCC
ATGTTCTTCATACGAGTGCCAAATTGCTCCAACGAAGAC Run BLAST on NCBI transcript from alignment at scaffold_251:724850..726491+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055196 ID=TCONS_00055196|Name=TCONS_00055196|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at scaffold_251:724850..726491+ (Clytia hemisphaerica)
aacaaaaattttctggaagagcacAATATACATTTATGGGACATTTATAC
AATAACACTAAACACAGGGAGTAGGCTCGAGTTTACTAGGATCAAAAAAC
TATATTAAGCTTAAATATGTGATTGTGTAGGTGTAAATAAAAAGGATATA
TGACGCCATTCGACCCTGGTAAACTCAGACCTAGTCCTTATTTTTACAAG
GTTTTCTTGATACATTTGATTATTGAAGATGCGGTTCACACGACAAGGCG
ATGTGGTGATTGGTCTGTCCATGGTTTTATTTTCACTCATCTGTTCATCC
ATGTTCTTCATACGAGGTATTATGGGTATTTTTCATTACAAGGTATTATG
GGTATTATTCATTACAAGGTATTATGGGTATTTTTCATCACAAGGTATTA
TAGGGATTTTTCATTACAAGGTATAATGGGTATTATTCATTACAAGGTAT
TATGGGTATTTTTGTATAGGAATTGTGTTTTTCATATTCTTAGCTTTTtc
gggaaaatcatcctaaaataccCTTATAACATTCTTAGGTCAAGACCcta
attcaaactagatttaacatttagtacatacgtctcaagcataaaatacA
TTTAAAGTATTGGCACTTTacaattgaaaatgctctaaaaatggcattct
tagcttcagtagCCAAATTTGATgctggtgatattcttagcatatttctt
ttggccaatttcatcatgaatatttttcttataaccAACCAGTTATTATT
CATGATATCCACCattgtcttctgacattacatcatgaacccaatagctg
attggttgtaagtgacgtaaaaacaGTCAATaacaatacgtcactttcac
tttcagccaaAAAGCTGTTGGATccgttgaagacattgcaatggtgcata
tcatgaattgggtCCCTGATATTCATGAAATGCACCACttcaatgtcttc
tgacattacatcatggacccaatagctgattggttgtaagtgacgtaaaa
tccgccaatacgtcactttcaaccaatcagctgttgggttcctggaagtc
attgcattggtgCATATCTTGAATTGGGTCCCTGAtataatgtcagaaga
cattgtaactgtgcatatcatgaatatggaTGGATCTATAGAAGACTCat
accctcttctcacagacccactggaaccccttcccactggaaaaattggc
caaaataccgtcaccggtggaaaattatcttcaaatttttgtccccattg
aaaagAATCAGATAAGTCaattctcactgcaaaatatcatGCAGTTTTTC
TATTCCCGTTGGAATtgaaacttgaaaacaaaagaatttaaatccctaCA
TAGaaaatatgagaatatcaatccccatcaagtttcagtccgttatttgt
ATCCCCATACATGGCTGAAAAAAACCaacaggtctgtgagaagggggtgt
tatatTGGGTCCgtcgtgatgtaatgtcagaagacattgcaattgtGTAT
ATCATGTAAATGGATGGCTCTATATAAGCGTAGTCACCAGAATATTACAC
GATATTCAATTAACATTGATAGAAAACTCCTAAATAGGAACAACCCCTCA
TATATTGTTCTTACTACAGTGCCAAATTGCTCCAACGAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055196-exon-scaffold_251-1491911889:724850..725165 | TCONS_00055196-exon-scaffold_251-1491911889:724850..725165 | Clytia hemisphaerica | exon |
| TCONS_00055196-exon-scaffold_251-1510915933:724850..725165 | TCONS_00055196-exon-scaffold_251-1510915933:724850..725165 | Clytia hemisphaerica | exon |
| TCONS_00055196-exon-scaffold_251-1575043694:724850..725165 | TCONS_00055196-exon-scaffold_251-1575043694:724850..725165 | Clytia hemisphaerica | exon |
| TCONS_00055196-exon-scaffold_251-1491911889:726469..726491 | TCONS_00055196-exon-scaffold_251-1491911889:726469..726491 | Clytia hemisphaerica | exon |
| TCONS_00055196-exon-scaffold_251-1510915933:726469..726491 | TCONS_00055196-exon-scaffold_251-1510915933:726469..726491 | Clytia hemisphaerica | exon |
| TCONS_00055196-exon-scaffold_251-1575043694:726469..726491 | TCONS_00055196-exon-scaffold_251-1575043694:726469..726491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:724850..726491 + |
Blast
The following BLAST results are available for this feature:
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