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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055194 ID=TCONS_00055194|Name=TCONS_00055194|organism=Clytia hemisphaerica|type=transcript|length=1926bp
GTTTACCTTGTGGCAGAGGATGAGGTCTTCTACAAGATATGATATTTGTG
TtcaaattttgtcattattcTTTTTGTTGGTATGCTGCAGAGTGATATTC
TTACAACtTCCTTCATCAAGCTGTATCCAAGACAGGAGATCCCAATTTCT
AAACGAAATATTTTCTTATGATCGAATTGGTAATGGAATCAAGCGTCGAG
ATGCCTTCATCGCTGGAAAAATATCATATGAGAGAAAAGCTCCTTTACTC
ATTGGTATTCCCACCGTTTATcgattttacaaaaacaaaacaacctTTTA
CTTGGATCGCACAATCAAATCTTTGATCAAACCTCTCTCAAAAGAAGATA
AAAGACAAGTCAATATTCTCGTGGTTTTGGCTGACacagaggaaaataaa
aaacgGTTCATCTACCAAAAGCTAAATGACTTGTTCCCAAACGAAATCCG
ATCCGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTC
TCCATGATTTAACACCAACGTTTAATGACACAAGCGAAAGAATGTATTGG
CGATCAAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGTTCAAAA
TCTGTGCGATTATTACTTACAAATTGAAGACGATGTTTTAGCCAATGACC
AATATTTTGACACGATCATGGAAGATATAAATCGTTTGAACAACGCTCGA
AATAAAGAACCAGTTATCTTTAAGGGCGAAAAGGAAACCCGCCTTAAACA
CAAGCCCTGGGTTATCTCTGAATATTATAAAATGGGTTTTATCGGGCGCT
TGATTCCAGCTCATTATTTAGATGTCTTTGCAGGGTTCTTTAAAGTGTTT
TATAATGAGTTGCCAGTAGATTGGGGATATCCTTACATGCTTGACATAAT
GGATCCTGGATTTAGTGAGCATCGACTCCATGTCAGTTTGTTTACACATA
TTGGGAAAATTAGCTCATCAATtggtacatgaaaaatatggaCAACACTA
CCgtatcacagacccactgggaacccttctcattcgaaaaattggccaaa
atagcGTCCCCAGGGAAAATTATCTTCCAATTTTCGTCCATcacactgaa
aataatcaaataaaccaatccgcactgcaaaatattatgctactTTTACC
ATCCCCGctcaattttctgacttgaaaacaaaagaattgaaatccgcTAT
AAAAACTATGGAAAGTCGATCCTCNTGACCATGTCAGTTTGTTTACACAT
ATTGGAAAAATTAGCTCATCAATtggtacatgaaaaatatggaCAACACT
ACCgtatcacagacccactgggaacccttctcattggaaaaattggccaa
aatagcGTCCCCGGGGAAAATTATCTTCCAATTTTTGTccacactgaaaa
taatcaaataaaccaatccgcactgcaaaatattatgctactTTTACCAT
CCCCGctcaattttctgacttgaaaacaaaaaaattgaaatccgcTATAA
AAACTATGGAAAATCGATCCTCATCGAGTATTTTTATCCTCACTGgttga
aaaaattctaccgggtctgtgagaagggaatgTAAAGATGAACAACACTC
CCGTATCATAGACCCGGTGGGAACCCCTCCCAAAAGCTTGATATGGATTA
GCGGAAACTTAAGCTTTTTGTTGAGCTTCACCTGGGATATTCTCATTTTT
CCTCTGTCTTTTAGTAGAATTCTCTTAAAGTGTGATATGATtgttttttg
ccatttttagaCTTATCTCCGAAATATGAGGTTGAGATTTTTTAACTTGT
TGTATAGTATTGGCTAAAATTGTACCTTCTTACAATatcttttttattca
aatttatatgTGTTTATGAGTAGTAAATTCAAATATAAACTCTAGGCTAG
AGCTAACTTTTTGCATTTATATTTTG Run BLAST on NCBI transcript from alignment at scaffold_251:720533..723756+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055194 ID=TCONS_00055194|Name=TCONS_00055194|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at scaffold_251:720533..723756+ (Clytia hemisphaerica)
GTTTACCTTGTGGCAGAGGATGAGGTCTTCTACAAGATATGATATTTGTG
TtcaaattttgtcattattcTTTTTGTTGGTATGCTGCAGAGTGATATTC
TTACAACGTAAGTATCTAAGGGTTCATCCTTCTCAACTGAATTGTGGTCA
ACAATTCTATCGGTAACTACTGTCTCGCTGTCGTGTCTACAATTATGGCC
GTAATATTctagaaaaaagggaatttcccaggaattttcaaaaccacaaa
tgatttggaagtgctctaagttaggttggaagggtagagctTTAACCCTA
AGTTTTAACGCTAAACTTAAAaccttagaatctgaggatccaaaagttca
aaaatggtccaataaggctcataatatagcctggaagtctataaacccga
gccaaattgaaatatccgattagaTTCGTAGATttaagagatagcccaaa
atcgactttctcgcctgaactccaaattttgaaaaatcaggaaataagct
aaattctcaacagattttgaccatgattgtactctCTTTGGTGGTTGCAT
cagcaaaatacaaaaatattgcAAGTTCTTCTTGGAACGATAATATCGTT
ATTTAGAAAAATGTTATGCTGGAAGGATAGATCTCGAAAACAGCATTCCA
TCGAATCTTTCCGGCACTGATCATGGCGATTTAGaattaaatttatttat
agtgtccaaattgaaaaatatatatttgattTACCAAACCATGACCAGAT
ACTCGCTTGTTCTCAGGGGGACATCAAATTTGTTATGAAAACGTTCAAAG
CAGCTAGAGCATAGAGATTATTGAAactattgattttattttattacagt
TCCTTCATCAAGCTGTATCCAAGACAGGAGATCCCAATTTCTAAACGAAA
TATTTTCTTATGATCGAATTGGTAATGGAATCAAGCGTCGAGATGCCTTC
ATCGCTGGAAAAATATCATATGAGAGAAAAGGTACCCATAAAAACCTTTT
TGAGATATTAACAATAGAAGTCAAGAGACTTGTCACCTATAAAAAACAGC
ATCCACACGTCATTTAGTCCTTTTATCAATCCCTATTGGTTCCCAAACTG
acatacaacgttgtttcaacgtttttctaatgttcacaacatccatatta
taacgttaaatgaacgttgaaaaacgTTGTTGCCAGCTGGTGTTCAATAG
TTCTTACCCCCCCCCCAATGACTCATCAATGGGAGCCCccgaaagggcat
tggtttttaatctaataaatacactccttcTGACACCCGAGAGCGCCAGT
GGCAGTTTTTCGCTTATTAGCTCTAGAATTACCACAGATATCCATGTATT
TCGGTTCCTACCACGTTCTAAAATAGCTTGAGTATCAAATGCCgtgtttt
ctttgatttaaaaatgtttagATTTTGCGCTGGGTATTAACGcagaatca
taaagaaaataAGTGAACAAAGGGACTGGTTTCGAGTATAATTCTTACGC
AACCTTATGTTAATCTGAAACCTTTTATTCGTTCCAGCTCCTTTACTCAT
TGGTATTCCCACCGTTTATcgattttacaaaaacaaaacaacctTTTACT
TGGATCGCACAATCAAATCTTTGATCAAACCTCTCTCAAAAGAAGATAAA
AGACAAGTCAATATTCTCGTGGTTTTGGCTGACacagaggaaaataaaaa
acgGTTCATCTACCAAAAGCTAAATGACTTGTTCCCAAACGAAATCCGAT
CCGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTCTC
CATGATTTAACACCAACGTTTAATGACACAAGCGAAAGAATGTATTGGCG
ATCAAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGTTCAAAATC
TGTGCGATTATTACTTACAAATTGAAGACGATGTTTTAGCCAATGACCAA
TATTTTGACACGATCATGGAAGATATAAATCGTTTGAACAACGCTCGAAA
TAAAGAACCAGTTATCTTTAAGGGCGAAAAGGAAACCCGCCTTAAACACA
AGCCCTGGGTTATCTCTGAATATTATAAAATGGGTTTTATCGGGCGCTTG
ATTCCAGCTCATTATTTAGATGTCTTTGCAGGGTTCTTTAAAGTGTTTTA
TAATGAGTTGCCAGTAGATTGGGGATATCCTTACATGCTTGACATAATGG
ATCCTGGATTTAGTGAGCATCGACTCCATGTCAGTTTGTTTACACATATT
GGGAAAATTAGCTCATCAATtggtacatgaaaaatatggaCAACACTACC
gtatcacagacccactgggaacccttctcattcgaaaaattggccaaaat
agcGTCCCCAGGGAAAATTATCTTCCAATTTTCGTCCATcacactgaaaa
taatcaaataaaccaatccgcactgcaaaatattatgctactTTTACCAT
CCCCGctcaattttctgacttgaaaacaaaagaattgaaatccgcTATAA
AAACTATGGAAAGTCGATCCTCNTGACCATGTCAGTTTGTTTACACATAT
TGGAAAAATTAGCTCATCAATtggtacatgaaaaatatggaCAACACTAC
Cgtatcacagacccactgggaacccttctcattggaaaaattggccaaaa
tagcGTCCCCGGGGAAAATTATCTTCCAATTTTTGTccacactgaaaata
atcaaataaaccaatccgcactgcaaaatattatgctactTTTACCATCC
CCGctcaattttctgacttgaaaacaaaaaaattgaaatccgcTATAAAA
ACTATGGAAAATCGATCCTCATCGAGTATTTTTATCCTCACTGgttgaaa
aaattctaccgggtctgtgagaagggaatgTAAAGATGAACAACACTCCC
GTATCATAGACCCGGTGGGAACCCCTCCCAAAAGCTTGATATGGATTAGC
GGAAACTTAAGCTTTTTGTTGAGCTTCACCTGGGATATTCTCATTTTTCC
TCTGTCTTTTAGTAGAATTCTCTTAAAGTGTGATATGATtgttttttgcc
atttttagaCTTATCTCCGAAATATGAGGTTGAGATTTTTTAACTTGTTG
TATAGTATTGGCTAAAATTGTACCTTCTTACAATatcttttttattcaaa
tttatatgTGTTTATGAGTAGTAAATTCAAATATAAACTCTAGGCTAGAG
CTAACTTTTTGCATTTATATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055194-exon-scaffold_251-1491911889:720533..720639 | TCONS_00055194-exon-scaffold_251-1491911889:720533..720639 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1510915933:720533..720639 | TCONS_00055194-exon-scaffold_251-1510915933:720533..720639 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1575043694:720533..720639 | TCONS_00055194-exon-scaffold_251-1575043694:720533..720639 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1491911889:721382..721513 | TCONS_00055194-exon-scaffold_251-1491911889:721382..721513 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1510915933:721382..721513 | TCONS_00055194-exon-scaffold_251-1510915933:721382..721513 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1575043694:721382..721513 | TCONS_00055194-exon-scaffold_251-1575043694:721382..721513 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1491911889:722070..723756 | TCONS_00055194-exon-scaffold_251-1491911889:722070..723756 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1510915933:722070..723756 | TCONS_00055194-exon-scaffold_251-1510915933:722070..723756 | Clytia hemisphaerica | exon |
| TCONS_00055194-exon-scaffold_251-1575043694:722070..723756 | TCONS_00055194-exon-scaffold_251-1575043694:722070..723756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:720533..723756 + |
Blast
BLAST of TCONS_00055194 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.835e-32 Identity = 90/270 (33.33%), Postives = 137/270 (50.74%), Query Frame = 2
Query: 245 LLIGIPTVYRFYKNKTTFYLDRTIKSLIKPLSKEDKRQVNILVVLADTEENKKRFIYQKLNDLFPNEIRSGLIGIIGIPKRFYLPLHDLTPTFNDTSERMYWRSKQSLDYAFIFQYVQNLCDYYLQIEDDVLANDQYFDTIMEDINRLNNARNKEPVIFKGEKETRLKHKPWVISEYYKMGFIGRLIPAHYLDVFAGFFKVFYNELPVDWGYPYML--DIMDPGF-SEH----------RLHVSLFTHIGKISSSIGT*KIWTTLPYHRP 1015
+++GIPTV R K+ YL T+ SLI L E+K I+V + +T+ + + L F EI SGL+ +I P+ +Y L +L TF D+ ER+ WR+KQ+LDY F+ Y Q YY+Q+EDD++ YF+TI N A +L + W+I E+ ++GFIG++ A L + F +FY E P+DW ++L + +P ++H R SLF H+G SS G + T Y +P
Sbjct: 137 IVMGIPTVKREVKS----YLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIK------NFA-------------LQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKP 383
The following BLAST results are available for this feature:
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