TCONS_00055193 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055193
Unique Name	TCONS_00055193
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	988

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_251:701941..708536+
coding sequence from alignment at scaffold_251:701941..708536+

transcript sequence

>TCONS_00055193 ID=TCONS_00055193|Name=TCONS_00055193|organism=Clytia hemisphaerica|type=transcript|length=988bp
AGAAAGTCGAAattaaaatgaagaagaagcaaatttttattttgtgtatt
TTAACTGCTATCAACATAACGTTTCCGTATATTTTAAAATTGCCTGAATG
CAAAAAATACGAcgccattttttcaaagatcaaatACAACCAACGTTTGA
TCGGAGATTTTATTACGTTCCTCCAATCAATATCCTTAAGACAATGTTTA
ACAAAGTGTATGTGGCATGACACTTGTCAATCAGTCAATCATTTCCGTGG
TAATAACAGCTGTGATTTGTTGGCGTCCTCCGTCCAGAGGAATCGGACGG
GCAACGCAGTCCTTGTGTCAGATAGAGGCTGGAATCACTTCGAGACTGAC
TTTAACATCATCACGCTCGGACCGTGGTGTACAGCAAACAACCCATGTCA
ACCGAATGAGAGATGTAAAGACGTTTGCTTTGATACTCATAAATGTGTCT
CTTTTACAACTGAATCGCTGCGAGATTACATCGAAACAGCATCTCAATCA
TCAGATCACAATACCGGAGATTTTCCGGCAATAAAGGCGTTCGATGGCAA
CAACAATGTCTACAGTCATACTGCTCGATCACCCACACCACACTGGATCA
AAGCCACATTCAAACAACGTGTATTCATTAATTACGTCATCTTCGTCAAT
CGATTACCTATCCTGTCCAGTCCTCATGATCGACGAAACGATAACATGCG
GCTAGAAACTATCCTACATGACAGTGGTCAAAGCCGCGTGACCGTTTTCG
GCAACACAGGTACATTGGGAACACAGAAGAATATTTCATGTATGCAATAC
GCAGACGAGTTTCAAGCTTTCCAACCTCTACAGTTTTCAACGGATTATAA
CAATATTGGTGAGATCTGGATTTATGGCCGAGTAGTGTTCACTTTCTAAA
CGATTCAGGGACAATACTATAGCATTCAGCTGTGGTGATTTTTCATGTTT
CAAGCGACCGTAGTCAGAgtgtctacggattttttttt

Run BLAST on NCBI

protein sequence of TCONS_00055193-protein

>TCONS_00055193-protein ID=TCONS_00055193-protein|Name=TCONS_00055193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
KVEIKMKKKQIFILCILTAINITFPYILKLPECKKYDAIFSKIKYNQRLI
GDFITFLQSISLRQCLTKCMWHDTCQSVNHFRGNNSCDLLASSVQRNRTG
NAVLVSDRGWNHFETDFNIITLGPWCTANNPCQPNERCKDVCFDTHKCVS
FTTESLRDYIETASQSSDHNTGDFPAIKAFDGNNNVYSHTARSPTPHWIK
ATFKQRVFINYVIFVNRLPILSSPHDRRNDNMRLETILHDSGQSRVTVFG
NTGTLGTQKNISCMQYADEFQAFQPLQFSTDYNNIGEIWIYGRVVFTF

Run BLAST on NCBI

transcript from alignment at scaffold_251:701941..708536+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055193 ID=TCONS_00055193|Name=TCONS_00055193|organism=Clytia hemisphaerica|type=transcript|length=6596bp|location=Sequence derived from alignment at scaffold_251:701941..708536+ (Clytia hemisphaerica)
AGAAAGTCGAAattaaaatgaagaagaagcaaatttttattttgtgtatt
TTAACTGCTATCAACATAACGTTTCCGTATATTTTAAAATTGCCTGAATG
CAAAAAATACGAcgccattttttcaaagatcaaatACAACCAACGTTTGA
TCGGAGATTTTATTACGTTCCTCCAATCAATATCCTTAAGACAATGTTTA
ACAAAGTGTATGTGGCATGACACTTGTCAATCAGTCAATCATTTCCGTGG
TAATAACAGCTGTGATTTGTTGGCGTCCTCCGTCCAGAGGAATCGGACGG
GCAACGCAGTCCTTGTGTCAGATAGAGGCTGGAATCACTTCGAGACTGAC
TTTAACATCATCACGGTAGGGAATAATTCGCATATTTAGATAGTGTCGAT
ATTTAACATGGATAGcacagtaatctaggacttttaggcagtttttcgat
agttttcacggggtccacggccagccagCTCGGCTATTTTTGTACTGAAT
GGAACTTTGgcaggagcggggattcgaaccgtgAATACTTGGTTTGAAAG
GCTAACACCTTAGCTTTGACCACTTGGACATCCTCCTTATTCACAGAAAG
TGAATCTAAGTTTACATACTTAAATCATTAAAACCTATACACAGAGCaaa
atacccctggacaaaattatgaaaaatcattatccaaaatccgccaaatt
taaagtcAGTGTTAAAAAGATGTgctgtgtttttatttttgccaaTAACT
TTCCAAGCATTTAAAAtcgaataataaaaaaaaagcttGGAAAGTtatgg
tcagaaataaaaacaCTTTACACCTTTTTGACACAGACTTTAATTCCCAC
CAAAATCTATTTTTCCGTCATACACCAAATTAAATTTGCGCAAATTTTAA
GCCATTATATACATTTCATTTGCACAGTTAGCTTACGCTAATTCAATCCT
CGAGGGACCAGGGATGATCTTCGAATTAgggaaaaattcgaattataaaG
AGTATTTTATACTAGCTTCTAGCTGAGGATACCAATAttctagttcgaat
tatagaaagataataataaataatagtagaggttcgaataaaaagaaaca
ccataattccaaatttgagtcaaaggctGAACCTGTGTGGAAACACGTGG
GAGAGGCCAGtatttttcagtgaaaaataaaaattaaaaggaaaaattac
agaagaaaaagtcaaaatcaaatgNNNNNNNNNNNNNNNNNNNNNNNNNN
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GATGAGGACACCGACGCTGAACTCTTCAAAAGCTTGTATAACCCTCTAAA
TCTACCTGGCATGTTCTACATTTGTCATGCTTGTCAACCTAACACAATCC
CAAGAGGCAGTGACGGTGAcaataaaaggaaaaagaaaaaagtcactAAA
GATGCTGCACCATCTATCCCAAGTCAAGACAGACCAACAGAATTATTAGA
GNNNNNNNNNNNNNAACAAAGAGGATGcaatcttggaaaaaaatgtaaag
attTCCATCCCAAAATGTGCTTCGACTCAATACGAAAAGGAGAATGTTTC
GCAACATCCTGCCGTTTCGTTCATGTGAAGGGAACCAGAAGAGAACCCAT
TATGGTTAAAAACACAGTAACTCACAACAACAGCAAGCTATTAGCAGAAA
AAGATGATGAGATCAAATCCTCTGAACCAGATCATTTTTTAGAGATTGTC
CGTCTGATGAAGGAAGAAATCATGGAGACACTGGACAAAAAGATCACCTC
GATCGAGAATCATCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTTCACCAAGAACCTTACCTGAAGCAGGATGCTCGAACAACCACACAAGT
AACACAAGTAAgtaattagagagagttgacttgTGTAATAGATTTAGTTT
TTTCTCATAGCTCGGACCGTGGTGTACAGCAAACAACCCATGTCAACCGA
ATGAGAGATGTAAAGACGTTTGCTTTGATACTCATAAATGTGTCTCTTTT
ACAACTGGTgagatggtttgagatttttcggcttaaaaaaacattttctt
ctctttagTCTCCCTACGCTCTATGTATTGTTATGTGTATTCATAATAGT
CATGACGTGACGTTTTCTACGGGAACATATCGATTTTTTCAGTAGTAGCA
GATTTAAGCTGAAGAAAGATTTCTCTTTACTTGTAAAAACCGGGGTGtct
ccgtataaaacattacgtcatgaatatgaTGAATTTGCTAAGGTAcaata
atatttgagaaaaaagggaaactcCCACGAAATCTCATAgccacaatcga
tttggaagcgctttAACTTAGGTTGTAacggtagagttttaactctgagt
tttaacatgagacttaatcCAAAAGCTCAAGAACGGCCCGAGGATTAAAT
CCAACAAATGGCCCAAAAGccactttctcgcccgaactttaaatgctaaa
aacgaggaattaaccaaaattctcaatatattttgaatgaGATTGTAGGA
TTTGCACCAAAAGAAAAGAGACTCGTAGAGCTTTCTACAAAGAAGAGAAT
TTATTGTTATCTTTTTTTAGAATCGCTGCGAGATTACATCGAAACAGCAT
CTCAATCATCAGATCACAATACCGGAGATTTTCCGGCAATAAAGGCGTTC
GATGGCAACAACAATGTCTACAGTCATACTGCTCGATCACCCACACCACA
CTGGATCAAAGCCACATTCAAACAACGTGTATTCATTAATTACGTCATCT
TCGTCAATCGATTACCTATCCTGTCCAGTCCTCATGATCGACGAAACGAT
AACATGCGGCTAGAAACTATCCTACATGACAGTGGTCAAAGCCGCGTGAC
CGTTTTCGGCAACACAGGTACATTGGGAACACAGAAGAATATTTCATGTA
TGCAATACGCAGACGAGTTTCAAGCTTTCCAACCTCTACAGTTTTCAACG
GATTATAACAATATTGGTGAGATCTGGATTTATGGCCGAGTAGTGTTCAC
TTTCTAAACGATTCAGGGACAATACTATAGCATTCAGCTGTGGTGATTTT
TCATGTTTCAAGCGACCGTAGTCAGAgtgtctacggattttttttt

Coding sequence (CDS) from alignment at scaffold_251:701941..708536+

>TCONS_00055193 ID=TCONS_00055193|Name=TCONS_00055193|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at scaffold_251:701941..708536+ (Clytia hemisphaerica)
AAAGTCGAAattaaaatgaagaagaagcaaatttttattttgtgtattTT
AACTGCTATCAACATAACGTTTCCGTATATTTTAAAATTGCCTGAATGCA
AAAAATACGAcgccattttttcaaagatcaaatACAACCAACGTTTGATC
GGAGATTTTATTACGTTCCTCCAATCAATATCCTTAAGACAATGTTTAAC
AAAGTGTATGTGGCATGACACTTGTCAATCAGTCAATCATTTCCGTGGTA
ATAACAGCTGTGATTTGTTGGCGTCCTCCGTCCAGAGGAATCGGACGGGC
AACGCAGTCCTTGTGTCAGATAGAGGCTGGAATCACTTCGAGACTGACTT
TAACATCATCACGCTCGGACCGTGGTGTACAGCAAACAACCCATGTCAAC
CGAATGAGAGATGTAAAGACGTTTGCTTTGATACTCATAAATGTGTCTCT
TTTACAACTGAATCGCTGCGAGATTACATCGAAACAGCATCTCAATCATC
AGATCACAATACCGGAGATTTTCCGGCAATAAAGGCGTTCGATGGCAACA
ACAATGTCTACAGTCATACTGCTCGATCACCCACACCACACTGGATCAAA
GCCACATTCAAACAACGTGTATTCATTAATTACGTCATCTTCGTCAATCG
ATTACCTATCCTGTCCAGTCCTCATGATCGACGAAACGATAACATGCGGC
TAGAAACTATCCTACATGACAGTGGTCAAAGCCGCGTGACCGTTTTCGGC
AACACAGGTACATTGGGAACACAGAAGAATATTTCATGTATGCAATACGC
AGACGAGTTTCAAGCTTTCCAACCTCTACAGTTTTCAACGGATTATAACA
ATATTGGTGAGATCTGGATTTATGGCCGAGTAGTGTTCACTTTCTAAAAA
GTCGAAattaaaatgaagaagaagcaaatttttattttgtgtattTTAAC
TGCTATCAACATAACGTTTCCGTATATTTTAAAATTGCCTGAATGCAAAA
AATACGAcgccattttttcaaagatcaaatACAACCAACGTTTGATCGGA
GATTTTATTACGTTCCTCCAATCAATATCCTTAAGACAATGTTTAACAAA
GTGTATGTGGCATGACACTTGTCAATCAGTCAATCATTTCCGTGGTAATA
ACAGCTGTGATTTGTTGGCGTCCTCCGTCCAGAGGAATCGGACGGGCAAC
GCAGTCCTTGTGTCAGATAGAGGCTGGAATCACTTCGAGACTGACTTTAA
CATCATCACGCTCGGACCGTGGTGTACAGCAAACAACCCATGTCAACCGA
ATGAGAGATGTAAAGACGTTTGCTTTGATACTCATAAATGTGTCTCTTTT
ACAACTGAATCGCTGCGAGATTACATCGAAACAGCATCTCAATCATCAGA
TCACAATACCGGAGATTTTCCGGCAATAAAGGCGTTCGATGGCAACAACA
ATGTCTACAGTCATACTGCTCGATCACCCACACCACACTGGATCAAAGCC
ACATTCAAACAACGTGTATTCATTAATTACGTCATCTTCGTCAATCGATT
ACCTATCCTGTCCAGTCCTCATGATCGACGAAACGATAACATGCGGCTAG
AAACTATCCTACATGACAGTGGTCAAAGCCGCGTGACCGTTTTCGGCAAC
ACAGGTACATTGGGAACACAGAAGAATATTTCATGTATGCAATACGCAGA
CGAGTTTCAAGCTTTCCAACCTCTACAGTTTTCAACGGATTATAACAATA
TTGGTGAGATCTGGATTTATGGCCGAGTAGTGTTCACTTTCTAAAAAGTC
GAAattaaaatgaagaagaagcaaatttttattttgtgtattTTAACTGC
TATCAACATAACGTTTCCGTATATTTTAAAATTGCCTGAATGCAAAAAAT
ACGAcgccattttttcaaagatcaaatACAACCAACGTTTGATCGGAGAT
TTTATTACGTTCCTCCAATCAATATCCTTAAGACAATGTTTAACAAAGTG
TATGTGGCATGACACTTGTCAATCAGTCAATCATTTCCGTGGTAATAACA
GCTGTGATTTGTTGGCGTCCTCCGTCCAGAGGAATCGGACGGGCAACGCA
GTCCTTGTGTCAGATAGAGGCTGGAATCACTTCGAGACTGACTTTAACAT
CATCACGCTCGGACCGTGGTGTACAGCAAACAACCCATGTCAACCGAATG
AGAGATGTAAAGACGTTTGCTTTGATACTCATAAATGTGTCTCTTTTACA
ACTGAATCGCTGCGAGATTACATCGAAACAGCATCTCAATCATCAGATCA
CAATACCGGAGATTTTCCGGCAATAAAGGCGTTCGATGGCAACAACAATG
TCTACAGTCATACTGCTCGATCACCCACACCACACTGGATCAAAGCCACA
TTCAAACAACGTGTATTCATTAATTACGTCATCTTCGTCAATCGATTACC
TATCCTGTCCAGTCCTCATGATCGACGAAACGATAACATGCGGCTAGAAA
CTATCCTACATGACAGTGGTCAAAGCCGCGTGACCGTTTTCGGCAACACA
GGTACATTGGGAACACAGAAGAATATTTCATGTATGCAATACGCAGACGA
GTTTCAAGCTTTCCAACCTCTACAGTTTTCAACGGATTATAACAATATTG
GTGAGATCTGGATTTATGGCCGAGTAGTGTTCACTTTCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034764	XLOC_034764	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055193-protein	TCONS_00055193-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055193-exon-scaffold_251-1491911889:701941..702305	TCONS_00055193-exon-scaffold_251-1491911889:701941..702305	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1510915933:701941..702305	TCONS_00055193-exon-scaffold_251-1510915933:701941..702305	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1575043694:701941..702305	TCONS_00055193-exon-scaffold_251-1575043694:701941..702305	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1491911889:707351..707447	TCONS_00055193-exon-scaffold_251-1491911889:707351..707447	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1510915933:707351..707447	TCONS_00055193-exon-scaffold_251-1510915933:707351..707447	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1575043694:707351..707447	TCONS_00055193-exon-scaffold_251-1575043694:707351..707447	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1491911889:708011..708536	TCONS_00055193-exon-scaffold_251-1491911889:708011..708536	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1510915933:708011..708536	TCONS_00055193-exon-scaffold_251-1510915933:708011..708536	Clytia hemisphaerica	exon
TCONS_00055193-exon-scaffold_251-1575043694:708011..708536	TCONS_00055193-exon-scaffold_251-1575043694:708011..708536	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:701941..708536 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0910853	0.35529	0.257829	0.252245	0.122834	0.0485324	0.644075	0.767423	0.0383779	0.0950745	0.0461408	0.181987	4.30104	4.18357	1.60336	1.38762	0.888907	1.26152	4.11509	6.23125	1.7173	1.61084	0.783275	1.4717	2.54265	3.31661	0.562032	0.199939	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008979	Galactose-bd-like
IPR003609	Pan_app

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055193 vs. Swiss-Prot (Human)

BLAST of TCONS_00055193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055193 (transcript) - C. hemisphaerica