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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055175 ID=TCONS_00055175|Name=TCONS_00055175|organism=Clytia hemisphaerica|type=transcript|length=1619bp
cgatacTTCAGTGGTTGATACCATTTTATCAATAAATGCACATTTTGTAG
TATAGCATGGAAACACCAGTTAGCAATGGACAAACCACTAACCCTGCTGT
TGCCAACCTcccaaacaaaagaatttctgatAACGTCATTCAAAAATACC
TTTACGGCTACAAAGAAATGAGGCTTGTTTCGTCGGAAGAAGTTTTATCC
ACTCTATTGAAAGGTCAAATACGAAAGTGCACCAGCCTACCGGAAACACC
ACCTCTATCACCACGTAAAATCAGAACACCTGATGAAATATCATTATGTT
CGTCAAGTCTACCCGGATCGAAATTTGGAGCATGCGCAATAAAGAGGATT
CAACAAGGCACTTGGTTTGGTCCTTTCGAAGGGAAGTTAGTGAGGACGAC
CGAGATTTCATCCAGTATGAACACAGACCACATGTGGGAGATCTTTCACG
ACGGAGAAGTCAGTCATTTCCTTGACGGTTTTAACGAAAATAACTGGATG
GCTTTCGTCCGCTGCGCTCGCCATAAGAAAGAACAAAATCTGGTCGTTTT
TCAATATCACGGTTGTATTTATTATCGTTCAACGAAAGATATTTTGCCAG
GAAATGAGCTCTTGGTTTGGTATGATACAAAATATACACAGCTTCTTGGT
ATACCATTGACTTGGAATGATAACAGAGGAACAACAAGCAAACGAAAGAA
TTCATTGAGTATTTGCACGGACGATCCATCAACACAACAACCACAACAAA
CAAGACGAAAACGTGAAAAAGTCACACCACTATCATTGTTACAGCAAATC
GACTACAAAACACAGCCTCCACGTAAAAACGAACTCGAGTTTTTAGCAAG
TCTGATTGCTAAGAATGCTCCATCTACACTATCAACAAATTATGAAAACT
CTCCTTTCTTATCGAGGAAAGATCTACCAGTTCCGCCCTCTACTATCCGC
TGCGACAAATGCTATTTCTCTTTTCCCAACAAAGAGCTTCTCATAACACA
CAAATGCAGCGCAATACCTTGGATACCACCACCTCCGCCATCAAATCTAA
GAGGTGGACCACCCGTTGAGAAACATCAACCTCTACACCGCCCAATACAC
GTTAATACGCCTTACGCCCCAGGAATCGACTTCACGCCAGCTTCAGCCCT
TAATCCACATTATCACAGTTATTATCAAAATCTTGCGCATGCGTACCCTT
CACCTCCTATGGAGCCGCCAATCAAGAACTTTGGACCTTATAAATCTAGT
ATTTTAccattaaaaaacttttaaaatagattttgtttgaaaaatattta
accttatcggggaaaaagtTGTCGGGGGAAAGTGCCGAAAATTTTTCACT
GATATTTTATCCCAGACCAAAACTTTTATACCTAAAATTTTACGCGGTAA
CTAATATTCGAATCTAAAAACTGATTATAAAATCCTGACATTTTTTTCCC
GATAAGGTAAATCTTTATTGCATCGATTTTCTAAAACAATAGATAGAAAG
CTTGATTGTGATTTTAATTGTCCACCTGATGAGGGGATTTCTGTTGCCTC
GCAGATAAGAGGTTGTTCTAGAAAAGAATTTGTCTTCTTATGAATCTTGT
AAAGGTTTTATTAGCGGAT Run BLAST on NCBI transcript from alignment at scaffold_251:555817..562668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055175 ID=TCONS_00055175|Name=TCONS_00055175|organism=Clytia hemisphaerica|type=transcript|length=6852bp|location=Sequence derived from alignment at scaffold_251:555817..562668+ (Clytia hemisphaerica)
cgatacTTCAGTGGTTGATACCATTTTATCAATAAATGGTATGAGTTACA
AGGGGGCAAAAggtttgtacacatttttttacaagaacattgaagccttc
ggatgttatgaactttttgagttttaagcctattCTTAACCATGTTctga
ttttcaacattttttgagcatttttgtccattttcctaagaaattgggta
ttttagaATCCATTAAGCCTTAAAGTGTTTATTTTTCCGAACTATGTCGA
ACACGAATGGGAATTCTAATTCCTTCCAATTTATCGGAAGATTcgattct
taaaatgttcttatttccacAATTTGAAGGAATATGTTTGTGTGGTTTCC
Tgggggctcccccaggggctggcgtgacgcgtaaatgacccttttttctg
tcgtgaatacgtgaattggactttgtcaacgcgtgaatacgtgaattgtg
ATATcggcgtgaacgtgaaaataagattttaccagcgtgaattcgtgaat
cgagattttgagcgtgaacgtgaaaagcaaatattgtctaaaacaaaact
gaataaacctaaatatgtgaaattttcttgctcgcttcgctcgcataatc
CTTGATATCATATTGACCTATTGCCAttgtaaagttattcaaaataatca
aaaattgaaacagaaacaaatacttttccttatttttctaagGGCGCATT
TTTTGATGCAAATATTGCATCCAGCGAGAGTGTTTTGAGCCAAAACCAAA
AAgtctaaatgagaaaattttcttcgtcggcgCTAATGCTGGTCGTCTTT
CTGTAATCGCTTATATTGTTACTAAATGCAGTACACAATATGATACCGCA
TGAACTTGGAGACAGTGAAGGGTATTTGGTTCTTCGATAATTTACAAAAG
TAGGTAGATAGTTCTAAAAACTTTTATATGATTGCATCATCGaacattca
gaaaaaaactcttGTGACGCCGCACCGTGTAAGGCAGGTACGTcactcgc
cgtaccagatttgtaccagtaaatggtcagtgttgaaaataatcaaagat
tctgaatgaattgtttgaccaaacaaggcatattaGGGTAACATTAGTGT
GTTAAGGCCGTTTTCTCAGCAATGAAAGagtgaaaattgtcaaaaaattt
tcgcgctcgcttcgctcgctttttccTTTCCACAGCTTTTCTTCAATGAG
ACAGGGGGGCAAACTTTGGAATTTTCGTCCTCTGGTTGTACCACCTTTTT
GAAGCTCGCGCTTTTCCAGACCATGAATTTGAGCCAAACCTCGATTTAAA
TtgattctcaaaataaaatatatttagggCCTGCGACGAAGAAAATCGGA
GGGAAATCCTTAAAGCTAAGGCTTAACTTTGCACTTACCTcccttaaaaa
gcaaattcaggCAGGGTTTATACCACCGTACGCCAGAGAGGTagtttttt
gtaactttggcgTGATAGACGTGATAGACAGACCTTAAACATTGCCCTAT
GAAAGCTCCAATAATTGTAAGAGGTCTTAATAGGTCGACGctgtcgagaa
taaggtcaaaaaactgcagaaaacgtTATGTTGGccataaaaaggtcaaa
tttagcccaataaggtcacaatcgtttaacaaaagaattaaaagcaaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtttcgcgcgtgaatacgtgaattggca
aaaaattttgcgtgaatacgtgaattgagggtcgactgggggggGCCTCT
TCCTGGAAAATATAGGTGTTTTAAAGTTCGCAAAGCCTTAGAATATGTTT
TAAACTtgatcttaacattttggccatcgaagccttatgttcttatatag
ttttttcttataaaaaacgtgtagttaaagaaattattggggAGTAAGAC
GATCGTGCTTTCAATTTCTATATTTACACCAGTAGGCAATGTTTTTTTCC
CAGCGAAACACACCCTCCTCTCgaacccactgggaccccactGGCACTGG
AAAATAGTGGCCAAAATATCTTCCCTACTGGAAAATTATACCCCAATCCC
CCCTAAAAGTATGTAATCGAATAAACGAgacctcactgcaaaatatggGG
CTAATCTTACCATCTccgttgaattttctgactcaaaaaaaaatgaaatt
ctgatCCTCAGTCATGAAAAAAGGAGAATGTACGTTAattcccatcgagt
tttggtccgtaaTCTTTACCCCCGGTGGCTaaaaaaaatcctactgggtc
tgtgagaagggagtaaAGCGAATAAAGAACACTGCCTTAGAATAATGTTT
TTAGCCTTTGGTTATCAATTGAATGAGCTAAAATATTCCCTTGTCACAGC
CCAAGAATAAACCCGACGAAACCCTAGAATATAAAAAATTCTCCATAACT
ATATAAAAGTTTCAATTCTTTATCGTTTACAGCACATTTTGTAGTATAGC
ATGGAAACACCAGTTAGCAATGGACAAACCACTAACCCTGCTGTTGCCAA
CCTcccaaacaaaagaatttctgatAACGTCATTCAAAAATACCTTTACG
GCTACAAAGAAATGAGGCTTGTTTCGTCGGAAGAAGTTTTATCCACTCTA
TTGAAAGGTAAGTTCTAGTTTCTGCCCTGTCTATTTTGTTGGTTAAAGTA
GGCTAAAAGTGGGCAGAACGTTGGGAATTacaatctttgcttgaaaaagg
ttgaaagaagtcattgttTTGAGGTCAAATAAAGAGAgtaatgcattgac
tttagacagccaacgTTCTGCCAACTTTCTGCCAACTTTAACTAACATTT
AGAATacgcagggcgaaaagtggacCGTCTTAACCAGAGCTAAACGGTTT
AGACGGACAACTTCTCGCCCACTTTTTACCTACCGTCCTGCTTCTTAAAA
GAAGCAGGTCAGAAAGACTCTAGTTTAGACAATCCTGTCCCACAGCCACG
TCGGAACTTTTTTCCACAGCGGGATGAAAATTTCGTGATTTATTGTTttc
aggttaaaaaatccagtgctGTGGGGATTGCTTTTAGAGCACAATCTTTT
CAATTGAATATCTAATggggatgaaaacaaagtctttaCAATCTGGGCTG
AAATCGTAGGGTATTATTCACATTGCGTTATTCCCACGAAAATTTGGCCA
AACTTTTCAGTGGGGTGGGGGTTCCACCGGacgacacaggggtgtaatca
tattttttagttttacacatcctttttattttcatcatgAGAGGTCCTGT
CGCAGCTCCTCAAGAATTGAATCCTTTTTGAATGTCTTAACGTCTAATTC
GATCATAGGTCATAGAATTACTCCCTGTTATTCATCtcatacagtcaact
ctctaattcgaacctctattattcgaatttttctgtaaaatagtggtccc
ctcagctagaaAGTAGTATAAATTACTCTTTGTAATTCGAAAAGAAACTT
CCtggccccttgaagatcgaattagagagagttaactGTAGAGTATCCTT
GATGGAAAAAGTATATGCTCGACTTTgaaaactttcattttacagGTCAA
ATACGAAAGTGCACCAGCCTACCGGAAACACCACCTCTATCACCACGTAA
AATCAGAACACCTGATGAAATATCATTATGTTCGTCAAGTCTACCCGGAT
CGAAATTTGGAGCATGCGCAATAAAGAGGATTCAACAAGGCACTTGGTTT
GGTCCTTTCGAAGGGAAGTTAGTGAGGACGACCGAGATTTCATCCAGTAT
GAACACAGACCACATGTGGGAGGTATGTTTAGCAAGActaatttgattag
ttgttttacgggcccgaccgaccttgaaattacaaaaatcgaaaaaaaac
tcatttttgtagtatatttttattttcattgctttacagactgccaaatt
ttcaaaattttggttgtttttccaaggttttgagaatttattATTCATGA
TTTGAccttttgtgtctttttattttctatttcgcattttcgtcaagatg
tagtagtttttactacctttttagaagattttatagttgaaattctactt
ttatttttattttttcgccgatcGGCCGACCCTcatttttgggtagcttg
gcccgtaaaacaacaaattaaattggcctcgcctttTAAAATTGGAATCT
CCAAAACTCGAACATGCACGGGGAAcaatttgttcgatttaaggaaattt
caagttatagAGTAAGGTTTACAAGGCACTGTTAACTGAAGGTcgataaa
acttgttcgagttaaggaaacaaTCCAGTTATAGAGGTTGAGGAAATTTT
TGAAGTAATTTGAGGAAAGATTGAATTAAATTCATCTCGGTTCTTTACAT
CCTAATGCGGCTTCGGTTAGATAATGTAGTTACAACAAATACTGTTAATA
ATAATTAGGTTAGGCCTTAAAAGCCGGTATATGGTTTATATTATTGATAC
ACCTGTTAGACTCAGTGGACAGGTAGGTTTTTTTGTGCTGGCATTTATTA
TTTATCCTGAAAATAAGACCAAGTCGCGAAAAAGCGGCTttgtcattcat
tcattcattcattcattcattcattcattcattcattcattcattcattc
attcattcattcattcattcattcattcattcattcattcattctctTTT
TACTCTTTTATCACCACAGATCTTTCACGACGGAGAAGTCAGTCATTTCC
TTGACGGTTTTAACGAAAATAACTGGATGGCTTTCGTCCGCTGCGCTCGC
CATAAGAAAGAACAAAATCTGGTCGTTTTTCAATATCACGGTTGTATTTA
TTATCGTTCAACGAAAGATATTTTGCCAGGAAATGAGCTCTTGGTTTGGT
ATGATACAAAATATACACAGCTTCTTGGTATACCATTGACTTGGAATGAT
AACAGAGGTTTGCATACTACACCTCTGTTTGCTCTGTGTCCCAGTGGAAT
TTTTTCCCTCAGTGGAGAtcaaaatttctatcgaaatcctcATTGGGATG
TatattctattgtttcaagctCCAAAAAGGGCATCATATtaaggatggtt
ttggagtgtaaaTTTTTCCATTCGATTTCTATAAAAGAATGAAATTACAG
GGTATACCTCCTGAAGTGAGTTAAAAATTCAGCGTACTTTTTTCACCAAG
GGAGATTTTTTGGCTGAGCTTTCAATCtccactgggtctgtgacaaGGTG
CGGTTTTATGTAATTTCCGAGAAGAGTCTGATTACTCTGCGTTGGCACGT
AAACACTATAAAGGCCATGGCTCTTTAACAGAATCTGCCCTGTTTGGATC
ACCGCTATGATCTTTTTCTTCCAGATTTggaatgaatattaaatgagctt
ttcagTACAATGATtaagcgaccgtagtacagtggtagagcatccggcta
cggttcgcaaggttgtgggttcaacccccagccgggttataccaaagatt
cccaaaatggtacttgattcCTCTCTGCTCAgtaactaagagaaggatca
agggtaagtggagaaatccagggagaaagagtggcgccctcccctacctt
cgggtagatagctatcgaaagaggagccttcgggtcgcctccgactgcgg
tcgcagacttacttacaaTGATTTGCTTAAAACTAAAACAATCACACCAA
AATAAACGTCAATATCAAACATAAACATAAGAGGCATTTTAAAAACCACA
AGGTTAGTTTGAACAACCAGGCCATGCTTGTGTTATAAAATATCAACTTT
ATTCCCCACAGGAACAACAAGCAAACGAAAGAATTCATTGAGTATTTGCA
CGGACGATCCATCAACACAACAACCACAACAAACAAGACGAAAACGTGAA
AAAGTCACACCACTATCATTGTTACAGCAAATCGACTACAAAACACAGCC
TCCACGTAAAAACGAACTCGAGTTTTTAGCAAGTCTGATTGCTAAGAATG
CTCCATCTACACTATCAACAAATTATGAAAACTCTCCTTTCTTATCGAGG
AAAGATCTACCAGTTCCGCCCTCTACTATCCGCTGCGACAAATGCTATTT
CTCTTTTCCCAACAAAGAGCTTCTCATAACACACAAATGCAGCGCAATAC
CTTGGATACCACCACCTCCGCCATCAAATCTAAGAGGTGGACCACCCGTT
GAGAAACATCAACCTCTACACCGCCCAATACACGTTAATACGCCTTACGC
CCCAGGAATCGACTTCACGCCAGCTTCAGCCCTTAATCCACATTATCACA
GTTATTATCAAAATCTTGCGCATGCGTACCCTTCACCTCCTATGGAGCCG
CCAATCAAGAACTTTGGACCTTATAAATCTAGTATTTTAccattaaaaaa
cttttaaaatagattttgtttgaaaaatatttaaccttatcggggaaaaa
gtTGTCGGGGGAAAGTGCCGAAAATTTTTCACTGATATTTTATCCCAGAC
CAAAACTTTTATACCTAAAATTTTACGCGGTAACTAATATTCGAATCTAA
AAACTGATTATAAAATCCTGACATTTTTTTCCCGATAAGGTAAATCTTTA
TTGCATCGATTTTCTAAAACAATAGATAGAAAGCTTGATTGTGATTTTAA
TTGTCCACCTGATGAGGGGATTTCTGTTGCCTCGCAGATAAGAGGTTGTT
CTAGAAAAGAATTTGTCTTCTTATGAATCTTGTAAAGGTTTTATTAGCGG
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055175-exon-scaffold_251-1491911889:555817..555854 | TCONS_00055175-exon-scaffold_251-1491911889:555817..555854 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1510915933:555817..555854 | TCONS_00055175-exon-scaffold_251-1510915933:555817..555854 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1575043694:555817..555854 | TCONS_00055175-exon-scaffold_251-1575043694:555817..555854 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1491911889:558399..558573 | TCONS_00055175-exon-scaffold_251-1491911889:558399..558573 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1510915933:558399..558573 | TCONS_00055175-exon-scaffold_251-1510915933:558399..558573 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1575043694:558399..558573 | TCONS_00055175-exon-scaffold_251-1575043694:558399..558573 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1491911889:559512..559738 | TCONS_00055175-exon-scaffold_251-1491911889:559512..559738 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1510915933:559512..559738 | TCONS_00055175-exon-scaffold_251-1510915933:559512..559738 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1575043694:559512..559738 | TCONS_00055175-exon-scaffold_251-1575043694:559512..559738 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1491911889:560636..560873 | TCONS_00055175-exon-scaffold_251-1491911889:560636..560873 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1510915933:560636..560873 | TCONS_00055175-exon-scaffold_251-1510915933:560636..560873 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1575043694:560636..560873 | TCONS_00055175-exon-scaffold_251-1575043694:560636..560873 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1491911889:561728..562668 | TCONS_00055175-exon-scaffold_251-1491911889:561728..562668 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1510915933:561728..562668 | TCONS_00055175-exon-scaffold_251-1510915933:561728..562668 | Clytia hemisphaerica | exon |
| TCONS_00055175-exon-scaffold_251-1575043694:561728..562668 | TCONS_00055175-exon-scaffold_251-1575043694:561728..562668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:555817..562668 + |
Blast
BLAST of TCONS_00055175 vs. Swiss-Prot (Human)
Match: PRDM6 (Putative histone-lysine N-methyltransferase PRDM6 OS=Homo sapiens GN=PRDM6 PE=1 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.143e-38 Identity = 90/261 (34.48%), Postives = 135/261 (51.72%), Query Frame = 3
Query: 279 PDEISLCSSSLPGSKFGACAIKRIQQGTWFGPFEGKLV--RTTEISSSMNTDHMWEIF-HDGEVSHFLDGF--NENNWMAFVRCARHKKEQNLVVFQYHGCIYYRSTKDILPGNELLVWYDTKYTQLLGIPLTWNDNRGTTSKRKNSLSICXXXXXXXXXXXXRRKREKVTPLSLLQQIDYKTQPPRKNELEFLASLIAKNAPSTLSTNYENSPFLSRKDLPVPPSTI------------RCDKCYFSFPNKELLITHKCS 1010
P E+ LC+S++PG +G CA +RIQQGTW GPF+G L+ + + NT H+WEI+ DG + HF+DG ++++WM ++RCARH EQNL V QY I+YR+ DI G ELLVWY+ YT GIPL + N S + Q Q K K+ P + + + + P +N SL+ K+ P + + + +++ L P ST +C +C+ +F + LL H C+
Sbjct: 245 PREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQCI----AQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVVFPQTPCSRN-----FSLLDKSGP--IESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCT 494
The following BLAST results are available for this feature:
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