TCONS_00055158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055158
Unique NameTCONS_00055158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055158 ID=TCONS_00055158|Name=TCONS_00055158|organism=Clytia hemisphaerica|type=transcript|length=1791bp
GGGCTGGGTGCTTTATCACCAACTATTGATCGACTTGTTCCAATTCTTGG
CACCTTTCCTTCGAAACGTCGAGCTTGCCAAACAAACTTACTTGCTGTAC
AAGGGTACATTACGCGTATTATTGGTCTTACTACATGATTTCCCAGAATT
CCTTTGCGACTATCATTTCTCATTCTGTGACGTCATCCCGCCCAACTGTA
TCCAAATGAGGAATTTGATCTTGAGCGCTTTCCCGAGAAATATGCGACTC
CCTGATCCGTTCACGCCGAACTTGAAGGTTGACTTATTGAACGATATCTC
CCACGCTCCTCGCATTAACACCAACTTCTCAGCGGCCATCCATCCGTCCT
CCTTCAAACACGATTTGGATTCGTACCTCAAGACTCGTGCACCTGTCACC
TTCCTCTCTGAATTGAGAAGCCATTTGCAGACTGGAAACGACCAGAGCAA
CAGGTACAACGTGCCTCTGATGAACGCGCTTGTGTTATACGTTGGTACAC
AGGCTATCGCTTACATCCAAAACAAGAGCAGTACGACCTCCATTGCTACC
ATCACTCATTCATCACATATGGATATCTTCCAAAATCTTGCTGTCGATTT
GGATACCGAAGGACGTTACTTGTACTTGAACGCGATAGCCAATCAGCTGC
GTTACCCGAACAGCCACACCCATTACTTCAGCTGTACACTGCTCTACTTG
TTCGCCGAAGCAAACTCCGAAGCTATCCAAGAACAAATCACAAGAGTTTT
GTTGGAGCGTTTGATTGTGAACAGACCTCACCCATGGGGTCTCTTGATCA
CCTTCATTGAGTTgatcaaaaatcacaattacAAGTTCTGGAGTCACGAC
TTCGTACACTGCGCACACGAAATTGAAAAACTGTTCGAATCAGTAGCTAG
AAGTTGCATGCAACAAAAACAACCCTCCTCGAGAACTGAAAACGAAGCTA
CTGACGGTTGAACAAAACCTCGAAAAATCCTCGAAAAACCTCGAAAATGT
AAAAAGTCCTTCGTAAGCAAGAAGGGAGCAGATTACCAGAGCCTTGTAAC
CTCGTAACTGAATGAAATAAATATCGAAACTTGTCGTTAGTAACAAGTCG
ATTCACAAATTTCTTGTGGATATTTTGTAAATAGTATAAAAGAAACAGAC
AATAGACAAACATTACACTGGTTGACTACATGTAGAATATTATAGGATTG
AAGTTCTGATTATTTTGACACAATCTTGTGGATGAACCCTACCGTTGTAC
CGTCTTGGACAAATATTACACAGGTTGATTACATGTCGTACCGTTGTAGT
CCTGGTCATTACACAATGTTGGAGGAATCGTAGCGTACCGTCTTGGAAAT
CGATCATGTAttcagattgacttcaatgGAGATTCATCAATCCCTCTATG
GAGTGGAAAATGGAATTATCTCCAAAAGTTATTCAaatcatttttacttt
ttatcacACTTTGGAATCTTCTCTCTTAAGCCTGTTAATTCAGTAAAATG
ACACTTCTAAGAAGATTGTGCCAATGTTTCGTTCTTATTTCTAAGCTTCT
TACAATCAGttgcattttaatttttgtgttgGACTGAAAGCAAATAGAGC
TTTATGGGCTACAGTACGGAACCAAAGTATTTTACGGTGAATTTGAATAT
TATATGAAATATATTatgactttcatttttttttgatttgtaaaaAACTG
GCTTTTTTTACAGATAGTTTGTCACATTGTTATATTGGTATGCAGTTAGT
TAGAggttattttttagaaaaacttcaaaagaaaCCAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_251:367578..371773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055158 ID=TCONS_00055158|Name=TCONS_00055158|organism=Clytia hemisphaerica|type=transcript|length=4196bp|location=Sequence derived from alignment at scaffold_251:367578..371773+ (Clytia hemisphaerica)
GGGCTGGGTGCTTTATCACCAACTATTGATCGACTTGTTCCAATTCTTGG
CACCTTTCCTTCGAAACGTCGAGCTTGCCAAACAAACTTACTTGCTGTAC
AAGGTAAGACATAGATAAACTGACATTCTTTTAGTCTTGTCAAAAGGTAA
TCGAATTCCGAAGATTCACAATGCTTATCACTTCATAAGATTATAGATAA
GTTACTTTTGTGCAGCAGTGTTTTTTGTATAGATTATCTCTATCAGGCCT
TCTGTGgcattaaaactaaaaattgaatatcttacATTTACAGGGTACAT
TACGCGTATTATTGGTCTTACTACATGATTTCCCAGAATTCCTTTGCGAC
TATCATTTCTCATTCTGTGACGTCATCCCGCCCAACTGTATCCAAATGAG
GAATTTGATCTTGAGCGCTTTCCCGAGAAATATGCGACTCCCTGATCCGT
TCACGCCGAACTTGAAGGTAAGATTTTTGTGAGAGAAGTTACGAAAGTTT
TTCAATGGCTAAAATTTTTGTATTCGAAGATCTTCCAAAGATTTATGgcc
tatttaaaaaatattttttggctgAAGAGTCTTGAAATTAAATCCAACCG
CACGAAGTCGACATACATCAAATAATGTTTCTGAAATCAGCATTGTATTA
CTGCAATTTTCACTAACTATACGAATTCGCGAAACTACAGATCGTAGCTG
TACATTTATTCCTAGATTTCACTGATCTCCATTTTCGGAAGATTCATAAA
AAGCATCTACGTCTCGAAATTTGAAGAATCTAGGCAAATCTGTTTTGTGA
AATTGATTTTCCGCTCAAAATAGTAACAGAAAGTAGCAGAAagaaaacgt
gtttttttttctcctgaaTTGATGATTTCAATAGTGTGAGCTTTCTATTC
GTTAGGTTGACTTATTGAACGATATCTCCCACGCTCCTCGCATTAACACC
AACTTCTCAGCGGCCATCCATCCGTCCTCCTTCAAACACGATTTGGATTC
GTACCTCAAGACTCGTGCACCTGTCACCTTCCTCTCTGAATTGAGAAGCC
ATTTGCAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgggggggggggggggtactacggAAAGTGTTC
TCAAAGTCTTCAGTGAAATTTtttatcacaggaaaaaattttgattcCCG
AGGCTATTAAAATGTATACTTCCGGATCTGGAAATTTTAAGGGCTCTTTT
TAGCTAAAGGTGtaagaaaatttgttcgagtcgAAGAGAACTCGTGGTAT
AGTGAGTATATGGAGACTCTTTTTCGTCTAGACTGGAAACGACCAGAGCA
ACAGGTACAACGTGCCTCTGATGAACGCGCTTGTGTTATACGTTGGTACA
CAGGCTATCGCTTACATCCAAAACAAGAGCAGTACGACCTCCATTGCTAC
CATCACTCATTCATCACATATGGATATCTTCCAAAATCTTGCTGTCGATT
TGGATACCGAAGGTATAGATTTGAATACTTtaagagcagaaactttcgcg
aggttgcaaaatcgcgaaatttcgcgaatttaactGTCGCGAATTTTACT
TTTGGAACGAATTCAGAGGATATAACTTTCGTGAGTTTTAGAATGTTATT
TCATTTTGCAGGCAAATAAGCgagaaaaatgcacaaaaactgaaaactga
gtATAAAATAGCAAAGGTGTACTTTTCgtggaaaaaactttcgcgaattt
ctcgtgtaatttcttacttggcagaaactttcacgaaaaagggcaaaaat
cgcgaaagtagATAGggttgatatttttaaataatagcCCAATTAATCTA
GGGCTTTAAAACAGTGATTTGATTATTTCTGGCAAAGACTGGgtgtttcc
gtagaaaacattacgtcattaatatcatgaattggtCCAATCAATAAAAC
GTTTACATTTTCTATATTTAGGACGTTACTTGTACTTGAACGCGATAGCC
AATCAGCTGCGTTACCCGAACAGCCACACCCATTACTTCAGCTGTACACT
GCTCTACTTGTTCGCCGAAGCAAACTCCGAAGCTATCCAAGAACAAATCA
CAAGGTAAGAacaagatattcatgttttctTCATAAGTAttgcgcttata
agcatatctaggctcagatatggcaaaCATTTAAAAGCATTGTTAAGCAT
TACCTAAACTTACATTTCCTGATTTTGCCTGTttttttacggattttcag
aaTCATCTAACCACCTTTCATAAGCATCCTTATAAGCATATTTCAGCCTT
GTCAAGCCCTCGACCTGAGCATCTCCGAGCCTGTTTTTGAATTTGTGTAG
CGATTTACCAATTCAACTGCCAATTGTTAAAAGATCCATGGAAAGGGGTT
GACTGGCTAGAGTTTACCAGGGTCAAGTGCTATCAAGTTTCTTAACTTTT
GCATACATGCGAGACACAGGCGTATCATTTATCCTGGTGAATTTGAGCTT
AATCACCCTCTGGTGTTAGGATTGAATTAGATCATCAGGGTTAATATAGT
ATGTTTATTGTTATGAACGCTCGAATGATTTTGGTTTAAATGAATGATCT
TAACGATCATATGCTATGTTATGTTTTCTGTTTCTCGAGCTCTTCTTGAT
ATCCTTTCTGATTCAAATGCAAGAATTTCTTTAAATGAAACAGGTAAATG
TAAATGGAACAAGGATTGTCTTTTTATTAAAGAATGGCTCgtcttctttg
ttttctttccaGAGTTTTGTTGGAGCGTTTGATTGTGAACAGACCTCACC
CATGGGGTCTCTTGATCACCTTCATTGAGTTgatcaaaaatcacaattac
AAGTTCTGGAGTCACGACTTCGTACACTGCGCACACGAAATTGAAAAGTA
AGTGGCTTTATTCCATACCAGTATTTTATGGATATTTATTTTGAGGATAG
GTTTTGGCTGAGATAAATTAAATCCTCTGTAACTTTTGAGTAAGTGATCT
GAAAAAACATATTGAAATTATACCATGTAAGAAATTTTGTCAAGGTTTGT
GAGGTCTTTTATACAACTTTGGTTGAATCAAGTTCACTTTTTGAAATCAA
TCTTTTTGTAAAACCAAGTTTGTCAAAATGTGTTTGCGTCTCAATCTTAC
AGCTAATTGTTAACTTATTGTATTCTCCTTTCAGACTGTTCGAATCAGTA
GCTAGAAGTTGCATGCAACAAAAACAACCCTCCTCGAGAACTGAAAACGA
AGCTACTGACGGTTGAACAAAACCTCGAAAAATCCTCGAAAAACCTCGAA
AATGTAAAAAGTCCTTCGTAAGCAAGAAGGGAGCAGATTACCAGAGCCTT
GTAACCTCGTAACTGAATGAAATAAATATCGAAACTTGTCGTTAGTAACA
AGTCGATTCACAAATTTCTTGTGGATATTTTGTAAATAGTATAAAAGAAA
CAGACAATAGACAAACATTACACTGGTTGACTACATGTAGAATATTATAG
GATTGAAGTTCTGATTATTTTGACACAATCTTGTGGATGAACCCTACCGT
TGTACCGTCTTGGACAAATATTACACAGGTTGATTACATGTCGTACCGTT
GTAGTCCTGGTCATTACACAATGTTGGAGGAATCGTAGCGTACCGTCTTG
GAAATCGATCATGTAttcagattgacttcaatgGAGATTCATCAATCCCT
CTATGGAGTGGAAAATGGAATTATCTCCAAAAGTTATTCAaatcattttt
actttttatcacACTTTGGAATCTTCTCTCTTAAGCCTGTTAATTCAGTA
AAATGACACTTCTAAGAAGATTGTGCCAATGTTTCGTTCTTATTTCTAAG
CTTCTTACAATCAGttgcattttaatttttgtgttgGACTGAAAGCAAAT
AGAGCTTTATGGGCTACAGTACGGAACCAAAGTATTTTACGGTGAATTTG
AATATTATATGAAATATATTatgactttcatttttttttgatttgtaaaa
AACTGGCTTTTTTTACAGATAGTTTGTCACATTGTTATATTGGTATGCAG
TTAGTTAGAggttattttttagaaaaacttcaaaagaaaCCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034747XLOC_034747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055158-exon-scaffold_251-1491911889:367578..367680TCONS_00055158-exon-scaffold_251-1491911889:367578..367680Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:367578..367680TCONS_00055158-exon-scaffold_251-1510915933:367578..367680Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:367578..367680TCONS_00055158-exon-scaffold_251-1575043694:367578..367680Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:367871..368044TCONS_00055158-exon-scaffold_251-1491911889:367871..368044Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:367871..368044TCONS_00055158-exon-scaffold_251-1510915933:367871..368044Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:367871..368044TCONS_00055158-exon-scaffold_251-1575043694:367871..368044Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:368483..368635TCONS_00055158-exon-scaffold_251-1491911889:368483..368635Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:368483..368635TCONS_00055158-exon-scaffold_251-1510915933:368483..368635Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:368483..368635TCONS_00055158-exon-scaffold_251-1575043694:368483..368635Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:369009..369189TCONS_00055158-exon-scaffold_251-1491911889:369009..369189Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:369009..369189TCONS_00055158-exon-scaffold_251-1510915933:369009..369189Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:369009..369189TCONS_00055158-exon-scaffold_251-1575043694:369009..369189Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:369649..369781TCONS_00055158-exon-scaffold_251-1491911889:369649..369781Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:369649..369781TCONS_00055158-exon-scaffold_251-1510915933:369649..369781Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:369649..369781TCONS_00055158-exon-scaffold_251-1575043694:369649..369781Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:370440..370574TCONS_00055158-exon-scaffold_251-1491911889:370440..370574Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:370440..370574TCONS_00055158-exon-scaffold_251-1510915933:370440..370574Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:370440..370574TCONS_00055158-exon-scaffold_251-1575043694:370440..370574Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1491911889:370862..371773TCONS_00055158-exon-scaffold_251-1491911889:370862..371773Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1510915933:370862..371773TCONS_00055158-exon-scaffold_251-1510915933:370862..371773Clytia hemisphaericaexon
TCONS_00055158-exon-scaffold_251-1575043694:370862..371773TCONS_00055158-exon-scaffold_251-1575043694:370862..371773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:367578..371773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0767	8.99002	30.0486	36.6842	38.1032	24.8771	16.4535	21.8341	12.5964	11.6491	12.7388	11.8004	13.8077	16.704	8.89127	10.1819	6.33175	7.67156	4.59724	4.89764	10.749	10.5764	16.6744	14.5702	23.5156	30.5022	6.83399	6.64088	14.9124	16.2679
Blast
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BLAST of TCONS_00055158 vs. Swiss-Prot (Human)
Match: CNOT1 (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2)

HSP 1 Score: 503.442 bits (1295), Expect = 2.565e-158
Identity = 250/317 (78.86%), Postives = 280/317 (88.33%), Query Frame = 2 
Query:    2 GWVLYHQLLIDLFQFLAPFLRNVELAKQTYLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLNDISHAPRINTNFSAAIHPSSFKHDLDSYLKTRAPVTFLSELRSHLQTGNDQSNRYNVPLMNALVLYVGTQAIAYIQNKXXXXXXXXXXXXXXMDIFQNLAVDLDTEGRYLYLNAIANQLRYPNSHTHYFSCTLLYLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNHNYKFWSHDFVHCAHEIEKLFESVARSCMQQKQPSSRTENEAT 952
            GW +Y QLLIDLF++LAPFLRNVEL K   +LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPPNCIQ+RNLILSAFPRNMRLPDPFTPNLKVD+L++I+ APRI TNF+  + P  FK DLDSYLKTR+PVTFLS+LRS+LQ  N+  NRYN+ L+NALVLYVGTQAIA+I NK ST S++TITHS+HMDIFQNLAVDLDTEGRYL+LNAIANQLRYPNSHTHYFSCT+LYLFAEAN+EAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN  +KFW+H+FVHCA EIEKLF+SVA+ CM QKQ     E    
Sbjct: 2060 GWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTG-VMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGA 2375
The following BLAST results are available for this feature:
BLAST of TCONS_00055158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT12.565e-15878.86CCR4-NOT transcription complex subunit 1 OS=Homo s... [more]
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