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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055133 ID=TCONS_00055133|Name=TCONS_00055133|organism=Clytia hemisphaerica|type=transcript|length=841bp
caaaaaaattttgatactgtaagaaagaaaatgaaaactaaGGGTTGTTG
TAATGCAGTGTGTAAAGAAATGATTGATGAGTTGCTTGAAGTGAATCGCA
TTTGGAAGAATGATTATGACAATTTGAAGCAAGAAAACGAACGGTTGAAA
GCATTATTAAGAAtggaaaacaatggaaatatgGACGATGGAATGATTGA
GTTTGGAAAAGGTCTGGAGCGTGGAAGTGGTGATTGTCTTCAGCAAAGAT
CCGGTGAAGACTTCCAACAAACGATTGAAAATATTCGCATATTGGAAAAA
CAGctgcaacatttcaaaaatgaatgCGAAAGAGAGCGAGAAAAAAAGCA
AAGAGAAATGTTCAAGAACgaaaatctgaaaagaaaattggcagaaaatg
aagaagttaCATTTCAGTTGCATCAAACGATTGACGTTTtagagaagaaa
ataaaaacagagGAAATAAGGAAGAAAAACATATGGGGAGGATGCAATTG
TGAACAGGAAAGAAAGGCTAAACTAATGGGGCGAGGTGCTTTCCCGAGGA
ACGAGCATGGTTTCACTGGATATAAAGAGGAAAGGGATTCCATGACAACG
GAATATCAACAAAGCAAAAATATCATGGTAACACATGGACAATTTGACCC
ATTCTTTCCTATCTTTTGACAAAAGACAGCTAATGTCAGAGGCCTTAAAG
GCACTACTATCTCTGCCGTgatctgacaaaaggaagtaactgcatttttc
ttattttgagataattgcATAAACGAGTTGACCTTATTCAAGATTAATGG
TATCGTTTTAAGATCAAAACATTTGCTGATTGTGAAAGGCC Run BLAST on NCBI protein sequence of TCONS_00055133-protein >TCONS_00055133-protein ID=TCONS_00055133-protein|Name=TCONS_00055133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
QKNFDTVRKKMKTKGCCNAVCKEMIDELLEVNRIWKNDYDNLKQENERLK
ALLRMENNGNMDDGMIEFGKGLERGSGDCLQQRSGEDFQQTIENIRILEK
QLQHFKNECEREREKKQREMFKNENLKRKLAENEEVTFQLHQTIDVLEKK
IKTEEIRKKNIWGGCNCEQERKAKLMGRGAFPRNEHGFTGYKEERDSMTT
EYQQSKNIMVTHGQFDPFFPIF Run BLAST on NCBI transcript from alignment at scaffold_251:108514..111089+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055133 ID=TCONS_00055133|Name=TCONS_00055133|organism=Clytia hemisphaerica|type=transcript|length=2576bp|location=Sequence derived from alignment at scaffold_251:108514..111089+ (Clytia hemisphaerica)
caaaaaaattttgatactgtaagaaagaaaatgaaaactaaGGGTTGTTG
TAATGCAGTGTGTAAAGAAATGATTGATGAGgtaaagattgaaaatgaaa
atttaatacaCTGTTATAgcacactctataattcgatctgGAAGGGATCA
GAAGTTTTCTTCGAACTGAGAGAATGCTTTtgtaacccagctggcacaca
acgttgtttcaacgtttatctaacattatatggacgttatgaatgttaga
aaaacgttgaaacaacgttgtgtgccagctgggaaggttTATCAAGCTGA
GGCATCGTTTTACTTTAAATCAGATTCGGAAAGATTCGAACAATGTGCTT
CAATTCTGACAAAAATGTCAATCTACTGACAATGGTAAACAGATCGCTTT
GAACCAGGCGATCAACGGGTTTTTTAACGAGTTTCCGAAAATTTCACGAC
GATAAAATTTAGACAAATTGAATAAAGCTATCACATCCAATTCAAGTGAC
ATTAAGTTTACAGGTCTTTATAGTTCAACGAGCTTCCTTATTTTCTATCT
CTAACAGTTGCTTGAAGTGAATCGCATTTGGAAGAATGATTATGACAATT
TGAAGCAAGAAAACGAACGGTTGAAAGCATTATTAAGAAtggaaaacaat
ggaaatatgGACGATGGAATGATTGAGTTTGGAAAAGGTCTGGAGCGTGG
AAGTGGTGATTGTCTTCAGCAAAGATCCGGTGAAGACTTCCAACAAACGA
TTGAAAATATTCGCATATTGGAAAAACAGGTAAGCAATTTCACTGCTTTG
AATGCTTTACATTTAAAATCTAACTCTTAATGTTATATtcaatacacccc
tgtttcacagcccgGTGGGACCCATAACCAACTGTAAAACTTAGCCTAAA
CCATCCACAATGAATCGTTTGACctaggaacaatagaatttttactCCCA
TTGAGATTTCGATTAAAAGAATTTTGTCCCACTGTGGGAATAAGTCTGAC
CAGATCTGTAAGACAGGGGGtgttaaatatttcctaaaaatcagccggga
aaaaaaattaaactttgtgGTAGTGGACAGAATTTTCGGAACAGAAACTT
AAATCGTTTTTAAttaagtaaaaatttcttttgttcttaaACTGTggata
ccatttttgttttgaaagacaACTATTGTATTGAGATGAAATGTCAAGTA
AAAAGTTTCGAAAAGCTGAAAAGTCTgttcacaaaaataaaagaagagaG
CGGAAATAAATATGCGAACGATGTATTGTTTTATTCttagaaaaactatt
gttttttCTCACGGCGAGCCAACTAAAAGAAACAACAAGAAATTCTCAGA
AACCCCAAcagaattttcacaaaattgtgtTAAAAGTTTGTGATGAAAGA
TTTCTGGGAAATGTACATACTGTCGATTAATATATGTAGGCAAAGTCTGC
AAAAAAGTTCCATGATTCACATAAATTATCAGAATAGTTTTTAAGAACCT
TATCGTTATAAGGAGCTAGATAATGAGACTCGATTaacaaaattattatt
tttcatttctagctgcaacatttcaaaaatgaatgCGAAAGAGAGCGAGA
AAAAAAGCAAAGAGAAATGTTCAAGAACgaaaatctgaaaagaaaattgg
cagaaaatgaagaagttaCATTTCAGTTGCATCAAACGATTGACGTTTta
gagaagaaaataaaaacagagGAAATAAGGAAGAAAAACATATGGGGAGG
ATGCAATTGTGAACAGGAAAGAAAGGTAACTAAAATTATACGATTTCTAA
ACTAGATATAAGAAATATatgattgaaaattgattttggttattttcata
ACTTTACTGACTGTcaaatttttggtgtttttccgtGGTTTTGAGAactt
tatgttcaatttttcattttatccattttttgtctttttattttctattt
cgaatttttctcAAGATGTGGTAggctgcctttttaggagatttcatagg
tgaaattctactttcatttttattttttcgccgaccgaccgaccctcttt
tttgggtagttTGGACCGTAAAACAGCAAATCAAATTGGCCTCACCtaaa
gaggaaagaaaaaataactccCAAAGAGCAAAAATAATATAGCTCTTGCA
TGCTATATAGTATTTGAGAAAGTTCTTTTCAAATACTGCAGTTTGACTGa
cgatttcttttttaaatttcgaatgaattttcaaattttctataatTTCA
GGCTAAACTAATGGGGCGAGGTGCTTTCCCGAGGAACGAGCATGGTTTCA
CTGGATATAAAGAGGAAAGGGATTCCATGACAACGGAATATCAACAAAGC
AAAAATATCATGGTAACACATGGACAATTTGACCCATTCTTTCCTATCTT
TTGACAAAAGACAGCTAATGTCAGAGGCCTTAAAGGCACTACTATCTCTG
CCGTgatctgacaaaaggaagtaactgcatttttcttattttgagataat
tgcATAAACGAGTTGACCTTATTCAAGATTAATGGTATCGTTTTAAGATC
AAAACATTTGCTGATTGTGAAAGGCC Coding sequence (CDS) from alignment at scaffold_251:108514..111089+ >TCONS_00055133 ID=TCONS_00055133|Name=TCONS_00055133|organism=Clytia hemisphaerica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_251:108514..111089+ (Clytia hemisphaerica)
caaaaaaattttgatactgtaagaaagaaaatgaaaactaaGGGTTGTTG
TAATGCAGTGTGTAAAGAAATGATTGATGAGTTGCTTGAAGTGAATCGCA
TTTGGAAGAATGATTATGACAATTTGAAGCAAGAAAACGAACGGTTGAAA
GCATTATTAAGAAtggaaaacaatggaaatatgGACGATGGAATGATTGA
GTTTGGAAAAGGTCTGGAGCGTGGAAGTGGTGATTGTCTTCAGCAAAGAT
CCGGTGAAGACTTCCAACAAACGATTGAAAATATTCGCATATTGGAAAAA
CAGctgcaacatttcaaaaatgaatgCGAAAGAGAGCGAGAAAAAAAGCA
AAGAGAAATGTTCAAGAACgaaaatctgaaaagaaaattggcagaaaatg
aagaagttaCATTTCAGTTGCATCAAACGATTGACGTTTtagagaagaaa
ataaaaacagagGAAATAAGGAAGAAAAACATATGGGGAGGATGCAATTG
TGAACAGGAAAGAAAGGCTAAACTAATGGGGCGAGGTGCTTTCCCGAGGA
ACGAGCATGGTTTCACTGGATATAAAGAGGAAAGGGATTCCATGACAACG
GAATATCAACAAAGCAAAAATATCATGGTAACACATGGACAATTTGACCC
ATTCTTTCCTATCTTTTGAcaaaaaaattttgatactgtaagaaagaaaa
tgaaaactaaGGGTTGTTGTAATGCAGTGTGTAAAGAAATGATTGATGAG
TTGCTTGAAGTGAATCGCATTTGGAAGAATGATTATGACAATTTGAAGCA
AGAAAACGAACGGTTGAAAGCATTATTAAGAAtggaaaacaatggaaata
tgGACGATGGAATGATTGAGTTTGGAAAAGGTCTGGAGCGTGGAAGTGGT
GATTGTCTTCAGCAAAGATCCGGTGAAGACTTCCAACAAACGATTGAAAA
TATTCGCATATTGGAAAAACAGctgcaacatttcaaaaatgaatgCGAAA
GAGAGCGAGAAAAAAAGCAAAGAGAAATGTTCAAGAACgaaaatctgaaa
agaaaattggcagaaaatgaagaagttaCATTTCAGTTGCATCAAACGAT
TGACGTTTtagagaagaaaataaaaacagagGAAATAAGGAAGAAAAACA
TATGGGGAGGATGCAATTGTGAACAGGAAAGAAAGGCTAAACTAATGGGG
CGAGGTGCTTTCCCGAGGAACGAGCATGGTTTCACTGGATATAAAGAGGA
AAGGGATTCCATGACAACGGAATATCAACAAAGCAAAAATATCATGGTAA
CACATGGACAATTTGACCCATTCTTTCCTATCTTTTGAcaaaaaaatttt
gatactgtaagaaagaaaatgaaaactaaGGGTTGTTGTAATGCAGTGTG
TAAAGAAATGATTGATGAGTTGCTTGAAGTGAATCGCATTTGGAAGAATG
ATTATGACAATTTGAAGCAAGAAAACGAACGGTTGAAAGCATTATTAAGA
AtggaaaacaatggaaatatgGACGATGGAATGATTGAGTTTGGAAAAGG
TCTGGAGCGTGGAAGTGGTGATTGTCTTCAGCAAAGATCCGGTGAAGACT
TCCAACAAACGATTGAAAATATTCGCATATTGGAAAAACAGctgcaacat
ttcaaaaatgaatgCGAAAGAGAGCGAGAAAAAAAGCAAAGAGAAATGTT
CAAGAACgaaaatctgaaaagaaaattggcagaaaatgaagaagttaCAT
TTCAGTTGCATCAAACGATTGACGTTTtagagaagaaaataaaaacagag
GAAATAAGGAAGAAAAACATATGGGGAGGATGCAATTGTGAACAGGAAAG
AAAGGCTAAACTAATGGGGCGAGGTGCTTTCCCGAGGAACGAGCATGGTT
TCACTGGATATAAAGAGGAAAGGGATTCCATGACAACGGAATATCAACAA
AGCAAAAATATCATGGTAACACATGGACAATTTGACCCATTCTTTCCTAT
CTTTTGAcaaaaaaattttgatactgtaagaaagaaaatgaaaactaaGG
GTTGTTGTAATGCAGTGTGTAAAGAAATGATTGATGAGTTGCTTGAAGTG
AATCGCATTTGGAAGAATGATTATGACAATTTGAAGCAAGAAAACGAACG
GTTGAAAGCATTATTAAGAAtggaaaacaatggaaatatgGACGATGGAA
TGATTGAGTTTGGAAAAGGTCTGGAGCGTGGAAGTGGTGATTGTCTTCAG
CAAAGATCCGGTGAAGACTTCCAACAAACGATTGAAAATATTCGCATATT
GGAAAAACAGctgcaacatttcaaaaatgaatgCGAAAGAGAGCGAGAAA
AAAAGCAAAGAGAAATGTTCAAGAACgaaaatctgaaaagaaaattggca
gaaaatgaagaagttaCATTTCAGTTGCATCAAACGATTGACGTTTtaga
gaagaaaataaaaacagagGAAATAAGGAAGAAAAACATATGGGGAGGAT
GCAATTGTGAACAGGAAAGAAAGGCTAAACTAATGGGGCGAGGTGCTTTC
CCGAGGAACGAGCATGGTTTCACTGGATATAAAGAGGAAAGGGATTCCAT
GACAACGGAATATCAACAAAGCAAAAATATCATGGTAACACATGGACAAT
TTGACCCATTCTTTCCTATCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055133-exon-scaffold_251-1491911889:108514..108594 | TCONS_00055133-exon-scaffold_251-1491911889:108514..108594 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1510915933:108514..108594 | TCONS_00055133-exon-scaffold_251-1510915933:108514..108594 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1575043694:108514..108594 | TCONS_00055133-exon-scaffold_251-1575043694:108514..108594 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1491911889:109071..109292 | TCONS_00055133-exon-scaffold_251-1491911889:109071..109292 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1510915933:109071..109292 | TCONS_00055133-exon-scaffold_251-1510915933:109071..109292 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1575043694:109071..109292 | TCONS_00055133-exon-scaffold_251-1575043694:109071..109292 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1491911889:110076..110288 | TCONS_00055133-exon-scaffold_251-1491911889:110076..110288 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1510915933:110076..110288 | TCONS_00055133-exon-scaffold_251-1510915933:110076..110288 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1575043694:110076..110288 | TCONS_00055133-exon-scaffold_251-1575043694:110076..110288 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1491911889:110765..111089 | TCONS_00055133-exon-scaffold_251-1491911889:110765..111089 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1510915933:110765..111089 | TCONS_00055133-exon-scaffold_251-1510915933:110765..111089 | Clytia hemisphaerica | exon |
| TCONS_00055133-exon-scaffold_251-1575043694:110765..111089 | TCONS_00055133-exon-scaffold_251-1575043694:110765..111089 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:108514..111089 + |
Blast
The following BLAST results are available for this feature:
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