TCONS_00055073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055073
Unique NameTCONS_00055073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055073 ID=TCONS_00055073|Name=TCONS_00055073|organism=Clytia hemisphaerica|type=transcript|length=328bp
TTGAGTTCAATCCATAGACCATGATGGCACCTTTAAAGTTTacatttcat
ttgaaaaggCATTGTAGGGTACAGTCATTGATTGgtactaaatttaattt
aaaagttcaaaagaaAGGGTAGGGCTACAAGAAACAACCTGGGTGTAAAA
AATGTGGCAAAATGACCGGACATTTTACAATAACCAAAAACAAATGCCAG
TAGAAGGGTTTCGTACCAGTTTCACTGATAGACTCtctctttttttaact
ttccaaTTCCCTGAGGATGCTCTTAAGACTTGCCATTGAGATACTGGTAG
CTGATCTGGTgccttcaaaatatatttt
Run BLAST on NCBI

transcript from alignment at scaffold_249:10190..10517

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055073 ID=TCONS_00055073|Name=TCONS_00055073|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at scaffold_249:10190..10517 (Clytia hemisphaerica)
aaaatatattttgaaggcACCAGATCAGCTACCAGTATCTCAATGGCAAG
TCTTAAGAGCATCCTCAGGGAAttggaaagttaaaaaaagagaGAGTCTA
TCAGTGAAACTGGTACGAAACCCTTCTACTGGCATTTGTTTTTGGTTATT
GTAAAATGTCCGGTCATTTTGCCACATTTTTTACACCCAGGTTGTTTCTT
GTAGCCCTACCCTttcttttgaacttttaaattaaatttagtacCAATCA
ATGACTGTACCCTACAATGccttttcaaatgaaatgtAAACTTTAAAGGT
GCCATCATGGTCTATGGATTGAACTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034697XLOC_034697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055073-exon-scaffold_249-1491911889:10190..10517TCONS_00055073-exon-scaffold_249-1491911889:10190..10517Clytia hemisphaericaexon
TCONS_00055073-exon-scaffold_249-1510915933:10190..10517TCONS_00055073-exon-scaffold_249-1510915933:10190..10517Clytia hemisphaericaexon
TCONS_00055073-exon-scaffold_249-1575043694:10190..10517TCONS_00055073-exon-scaffold_249-1575043694:10190..10517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:10190..10517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59624	0.581428	0.337547	0.660474	3.21625	1.58845	1.18426	0.884393	2.63008	0.311177	1.20814	0.406382	2.00503	1.04888	1.35426	0.726664	0.223798	0.917541	1.58454	0.355274	1.32543	1.68712	0	0.621525	0.320078	1.14265	0.408782	0	1.65445	0.698404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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