TCONS_00055063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055063
Unique NameTCONS_00055063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055063 ID=TCONS_00055063|Name=TCONS_00055063|organism=Clytia hemisphaerica|type=transcript|length=384bp
ACAATGattaaaaatgatatttaactttaatagaacaataaataaatatg
gacaaaagtgatatTATTGTTGGTGTTTGTCATGGTGAATTTGGATCAAA
TATATTTCAAAGTCGTCATTCGGTATGATGTCACCCTCGACAGAAACGTA
TGAATAATACCTTGTCAATTATAAATCATGTTTTGGATATTGAATTGCAT
TATAATCcttTACACTTGGATGCACATTCATTTGTCACGAAAACTCAGCA
AAGTCGAATACATATTGCACGTTTATTATTCTTCACGAATCGTTATTCAT
TCTTCATGATAAACATGCTGCATaaagttaaaaacaaatatcaaaataaa
ggtCGGATCTTGATCAAAATGTTGGGAAAAATNN
Run BLAST on NCBI

transcript from alignment at scaffold_249:702..1432+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055063 ID=TCONS_00055063|Name=TCONS_00055063|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at scaffold_249:702..1432+ (Clytia hemisphaerica)
ACAATGattaaaaatgatatttaactttaatagaacaataaataaatatg
gacaaaagtgatatTATTGTTGGTGTTTGTCATGGTGAATTTGGATCAAA
TATATTTCAAAGTCGTCATTCGGTATGATGTCACCCTCGACAGAAACGTA
TGAATAATACCTTGTCAATTATAAATCATGTTTTGGATATTGAATTGCAT
TATAATCGTGAGTATATTAAAATTTAACTATTCAATTTCTAGTCATCTTT
TTTCACTAtgaagaaattggaaaaatggttttgaaaatttcataagGGTA
TAAGGTTCCTTATTGTTCCGAACATACATCTTGAAATTTCTGTCTGTCAC
TTTGGATAAATTATATATATTAAATCTTAGCTTAGTTGGGAGAGTAATCG
CCCGCCAAGCGAGAGGTCGTAAGTTCAatccccactcgattcgttacctt
tgagagaattgggaagtacattagtgcggAATCTATCGACTCTcataaat
gtttattttcttttataaaaaatcctctaatttcattgtttttttcattt
taagcttTACACTTGGATGCACATTCATTTGTCACGAAAACTCAGCAAAG
TCGAATACATATTGCACGTTTATTATTCTTCACGAATCGTTATTCATTCT
TCATGATAAACATGCTGCATaaagttaaaaacaaatatcaaaataaaggt
CGGATCTTGATCAAAATGTTGGGAAAAATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034690XLOC_034690Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055063-exon-scaffold_249-1491911889:702..908TCONS_00055063-exon-scaffold_249-1491911889:702..908Clytia hemisphaericaexon
TCONS_00055063-exon-scaffold_249-1510915933:702..908TCONS_00055063-exon-scaffold_249-1510915933:702..908Clytia hemisphaericaexon
TCONS_00055063-exon-scaffold_249-1575043694:702..908TCONS_00055063-exon-scaffold_249-1575043694:702..908Clytia hemisphaericaexon
TCONS_00055063-exon-scaffold_249-1491911889:1256..1432TCONS_00055063-exon-scaffold_249-1491911889:1256..1432Clytia hemisphaericaexon
TCONS_00055063-exon-scaffold_249-1510915933:1256..1432TCONS_00055063-exon-scaffold_249-1510915933:1256..1432Clytia hemisphaericaexon
TCONS_00055063-exon-scaffold_249-1575043694:1256..1432TCONS_00055063-exon-scaffold_249-1575043694:1256..1432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:702..1432 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37769	3.6058	2.58882	3.49407	100.934	53.1076	70.1031	85.6204	29.0122	28.8755	30.3199	24.2126	23.7005	14.2604	9.01164	13.0534	7.55066	7.98386	25.819	26.9409	34.5353	25.1009	19.6665	19.8144	14.4777	29.447	56.5683	48.4182	49.1491	51.7349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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