TCONS_00055053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055053
Unique NameTCONS_00055053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055053 ID=TCONS_00055053|Name=TCONS_00055053|organism=Clytia hemisphaerica|type=transcript|length=375bp
gcaaagaaatcgaaatctTCAGTACACCCTGCAAATCTTTTTGTtgaatt
tacattaaaatttgGATTAAACTGTAGCAATAATTCTGCTTCTGCTGTGA
ATCCAAGAGCATATCCAAAATTTACAGTAGCCAGGGCAGCAGAAAATGCA
GCAAAACATGCTGTCCACATTTTGTCCTTGTTGTTTTTACCCTCAAAAGC
TGAATCATTTTGTATGAAAATATCACCGCGAGCTGATGCCATTATTGTAA
TAACTTTTCTTTAAGGTTGACCTCTTAGTGCCAGTTCCCAATGTCTAAAT
ACTGATGGAAGAAGTCATATTATTGGGAGCATCTTGTcagtcttttttaa
ttttcgtatTTGTATTGGTTTATCt
Run BLAST on NCBI

transcript from alignment at scaffold_248:333365..333739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055053 ID=TCONS_00055053|Name=TCONS_00055053|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at scaffold_248:333365..333739 (Clytia hemisphaerica)
aGATAAACCAATACAAatacgaaaattaaaaaagactgACAAGATGCTCC
CAATAATATGACTTCTTCCATCAGTATTTAGACATTGGGAACTGGCACTA
AGAGGTCAACCTTAAAGAAAAGTTATTACAATAATGGCATCAGCTCGCGG
TGATATTTTCATACAAAATGATTCAGCTTTTGAGGGTAAAAACAACAAGG
ACAAAATGTGGACAGCATGTTTTGCTGCATTTTCTGCTGCCCTGGCTACT
GTAAATTTTGGATATGCTCTTGGATTCACAGCAGAAGCAGAATTATTGCT
ACAGTTTAATCcaaattttaatgtaaattcaACAAAAAGATTTGCAGGGT
GTACTGAagatttcgatttctttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034680XLOC_034680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055053-exon-scaffold_248-1491911889:333365..333739TCONS_00055053-exon-scaffold_248-1491911889:333365..333739Clytia hemisphaericaexon
TCONS_00055053-exon-scaffold_248-1510915933:333365..333739TCONS_00055053-exon-scaffold_248-1510915933:333365..333739Clytia hemisphaericaexon
TCONS_00055053-exon-scaffold_248-1575043694:333365..333739TCONS_00055053-exon-scaffold_248-1575043694:333365..333739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:333365..333739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90032	4.87115	0.967945	1.18373	4.61144	3.41627	4.12159	3.60134	9.18504	8.4771	8.7358	8.54023	7.79762	8.04148	12.5584	11.7212	16.2044	13.8829	6.66842	12.3624	8.46414	7.88456	8.84805	10.6039	7.34282	13.5162	7.52383	4.3398	13.0436	13.4179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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