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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055051 ID=TCONS_00055051|Name=TCONS_00055051|organism=Clytia hemisphaerica|type=transcript|length=2172bp
gcacatttgAAGCTACGAATTAGCTATTATTAGTTTCACTAGTCATTTAT
CAGTCAGTCTAGAATTTTCCTGCCTCCTGtaatcaatcaaaatttaaaga
tttaaaatcaaAGATCTCCATAAAGTTCCTTTCTTCGTCTTCATTATATA
TAGCATTAAGATCCTCCTCAGAATCGTTAGTATCGTCAGTTTCATCAGTG
TTCGTACAAGAGGTGCCATGGCACTCCTTACAAAGGTAAGTACATTTCAG
TCCAGCTTTACGACACGTGCACCTGTAAGTATCACACATACCTTTACAAC
CACAACGAATAACTTTCAATAGATCAGAGGGACCAGCTTCAATATCTGTC
ATGATTGGAGTAAAGGATTCAGAAACCATCTGCCACCCCCAGTTAAGTGG
CATGTAATCGGTATTTCTGAGCTCTCGCCATACTTTCAACTGGTGATACA
CGCGTAAACCATTTATATCGTCGCATGTTGGGTAAGTTGTTGAgtcattt
tcgtaatttttgatGGCTTCTTTTAACAAAACTCCAGCTGTTCTTACAAT
ACGAATAGTTTCATCACCGATTCCATTTTGTCTTTCTTTGTACCATTTCT
CCGATAGTACTTCAGCAGCTCTGTTCAGTAATATAATATTGCTTTTTCCT
TCTCTGGAAACAAAGTTAATGCAATTTTTGTACTTTTCTTCCAAtttatt
tttggtcattttcacgGAATATACTTCATCGCCAAGGGAAGACATCATAT
TGTGAAACTCTGTAACTGTATACAATTCGACATCATCTTGAAGAAAATCA
GTACACGCTTGCTCGAACAACTCGCTTTTCGTTGTGCAAACTGGCCGACC
AGGTGTTTTACGGTCAGGAGGAACTTCAAACGCCGTTCTACAAGCAACAT
GATACCTTGCTTCTGGTGCAACGAGATCAACAACAGACAGCAAACGTCTT
TGAACATTCATAGCGTGATCATCATTACGCGATTGACATATGTTAAGCGT
TTCCTTAAAGATGTCTGTATCTATCGTTTCAACTTTACAATATTCTTTAA
AACGATCAGGGTGTCTGTCATCGAATTCGCACAGACTTTCACAGTAAAAG
CATAATTTCTTAAAGTCAAAAGGGTTGCCACAAACACGTTTGCTTGACCT
TGTTGTAGTTTCATCTGACGATTTCCTTTTTCGAGCTGCGTTCCTCAAGT
TTGTTCTGCAAGATTGATGATTGTACGTTAAAATGTTATTTTCTTTGTTC
CTCGTGAGCTTAGCTACTAGTTCGTCCAAATCACATTTTCTGGCTAAAAT
TATAAGTGAGTTTATGGGATTGTCCTTTTGGTTTTCTCGATTTTTCATTT
TACCCACTTGACTCAAAACTTCTTTATCAGCTCCTTTACCACATATTATA
CAAAACTGATCCATCTCCATATTTAATACTGTTTATATCACCATGTATTA
TTTTTTCATATTTTAACTCTGAAGGAAAATTATCACAATATTAAATACTC
ACAAATACAAAAAAGCCTTATTCGTAACTTAAACTGTTCACAATCTGCTC
CATGAAAGAACTCAAAATTAAATGAATGAACTCGGTATAAAAAGCTCGAT
TTTTCTTAAATAAAAAGCGGTTGAAAAATATTAAACAAATACACAGAGGC
TGCTTATGTTAATTGCTAAAAAAAGGTGTGAAGTAATTGATATATAATTA
AACATTAAATGCTTAGATATGAAGTCAATGAATTTCAGAGGGAAAATATC
AAAATTGCTGACCAATTAATCCCAGTCATTTTCACATATCAAGCTTATTA
ACGAGAGGAGTTCTGGTCATTTAATTGATTTTTGGGTAATTTTTGATGAC
ATCATCAATTTTTGGGCATTTTTTTGTAATTTTTGTTTTTCTTATGTTTT
AGTATTTCATTTTCAAGCTTTTTGCAAAATTTGAAGGTCATACCTTGCTG
AAATCGTAAGTTACAGACGATTTAAAAGATATTTCAAAAAACTCATTTTC
TGCATTTTGGGGTTTTTACCACCTGTCAGTGTTTGGTCCATAACTTTTTT
TCCCCAGGACGAAAAAATTGACcggtttcatttttgaaaagctgataaaa
ttatctttccaacggtatatagaaaccttttataataattttttctaggt
cGACCCTAATTTCTACTGGACT Run BLAST on NCBI protein sequence of TCONS_00055051-protein >TCONS_00055051-protein ID=TCONS_00055051-protein|Name=TCONS_00055051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MEMDQFCIICGKGADKEVLSQVGKMKNRENQKDNPINSLIILARKCDLDE
LVAKLTRNKENNILTYNHQSCRTNLRNAARKRKSSDETTTRSSKRVCGNP
FDFKKLCFYCESLCEFDDRHPDRFKEYCKVETIDTDIFKETLNICQSRND
DHAMNVQRRLLSVVDLVAPEARYHVACRTAFEVPPDRKTPGRPVCTTKSE
LFEQACTDFLQDDVELYTVTEFHNMMSSLGDEVYSVKMTKNKLEEKYKNC
INFVSREGKSNIILLNRAAEVLSEKWYKERQNGIGDETIRIVRTAGVLLK
EAIKNYENDSTTYPTCDDINGLRVYHQLKVWRELRNTDYMPLNWGWQMVS
ESFTPIMTDIEAGPSDLLKVIRCGCKGMCDTYRCTCRKAGLKCTYLCKEC
HGTSCTNTDETDDTNDSEEDLNAIYNEDEERNFMEIFDFKSLNFD Run BLAST on NCBI transcript from alignment at scaffold_248:296895..299066 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055051 ID=TCONS_00055051|Name=TCONS_00055051|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at scaffold_248:296895..299066 (Clytia hemisphaerica)
AGTCCAGTAGAAATTAGGGTCgacctagaaaaaattattataaaaggttt
ctatataccgttggaaagataattttatcagcttttcaaaaatgaaaccg
GTCAATTTTTTCGTCCTGGGGAAAAAAAGTTATGGACCAAACACTGACAG
GTGGTAAAAACCCCAAAATGCAGAAAATGAGTTTTTTGAAATATCTTTTA
AATCGTCTGTAACTTACGATTTCAGCAAGGTATGACCTTCAAATTTTGCA
AAAAGCTTGAAAATGAAATACTAAAACATAAGAAAAACAAAAATTACAAA
AAAATGCCCAAAAATTGATGATGTCATCAAAAATTACCCAAAAATCAATT
AAATGACCAGAACTCCTCTCGTTAATAAGCTTGATATGTGAAAATGACTG
GGATTAATTGGTCAGCAATTTTGATATTTTCCCTCTGAAATTCATTGACT
TCATATCTAAGCATTTAATGTTTAATTATATATCAATTACTTCACACCTT
TTTTTAGCAATTAACATAAGCAGCCTCTGTGTATTTGTTTAATATTTTTC
AACCGCTTTTTATTTAAGAAAAATCGAGCTTTTTATACCGAGTTCATTCA
TTTAATTTTGAGTTCTTTCATGGAGCAGATTGTGAACAGTTTAAGTTACG
AATAAGGCTTTTTTGTATTTGTGAGTATTTAATATTGTGATAATTTTCCT
TCAGAGTTAAAATATGAAAAAATAATACATGGTGATATAAACAGTATTAA
ATATGGAGATGGATCAGTTTTGTATAATATGTGGTAAAGGAGCTGATAAA
GAAGTTTTGAGTCAAGTGGGTAAAATGAAAAATCGAGAAAACCAAAAGGA
CAATCCCATAAACTCACTTATAATTTTAGCCAGAAAATGTGATTTGGACG
AACTAGTAGCTAAGCTCACGAGGAACAAAGAAAATAACATTTTAACGTAC
AATCATCAATCTTGCAGAACAAACTTGAGGAACGCAGCTCGAAAAAGGAA
ATCGTCAGATGAAACTACAACAAGGTCAAGCAAACGTGTTTGTGGCAACC
CTTTTGACTTTAAGAAATTATGCTTTTACTGTGAAAGTCTGTGCGAATTC
GATGACAGACACCCTGATCGTTTTAAAGAATATTGTAAAGTTGAAACGAT
AGATACAGACATCTTTAAGGAAACGCTTAACATATGTCAATCGCGTAATG
ATGATCACGCTATGAATGTTCAAAGACGTTTGCTGTCTGTTGTTGATCTC
GTTGCACCAGAAGCAAGGTATCATGTTGCTTGTAGAACGGCGTTTGAAGT
TCCTCCTGACCGTAAAACACCTGGTCGGCCAGTTTGCACAACGAAAAGCG
AGTTGTTCGAGCAAGCGTGTACTGATTTTCTTCAAGATGATGTCGAATTG
TATACAGTTACAGAGTTTCACAATATGATGTCTTCCCTTGGCGATGAAGT
ATATTCcgtgaaaatgaccaaaaataaaTTGGAAGAAAAGTACAAAAATT
GCATTAACTTTGTTTCCAGAGAAGGAAAAAGCAATATTATATTACTGAAC
AGAGCTGCTGAAGTACTATCGGAGAAATGGTACAAAGAAAGACAAAATGG
AATCGGTGATGAAACTATTCGTATTGTAAGAACAGCTGGAGTTTTGTTAA
AAGAAGCCatcaaaaattacgaaaatgacTCAACAACTTACCCAACATGC
GACGATATAAATGGTTTACGCGTGTATCACCAGTTGAAAGTATGGCGAGA
GCTCAGAAATACCGATTACATGCCACTTAACTGGGGGTGGCAGATGGTTT
CTGAATCCTTTACTCCAATCATGACAGATATTGAAGCTGGTCCCTCTGAT
CTATTGAAAGTTATTCGTTGTGGTTGTAAAGGTATGTGTGATACTTACAG
GTGCACGTGTCGTAAAGCTGGACTGAAATGTACTTACCTTTGTAAGGAGT
GCCATGGCACCTCTTGTACGAACACTGATGAAACTGACGATACTAACGAT
TCTGAGGAGGATCTTAATGCTATATATAATGAAGACGAAGAAAGGAACTT
TATGGAGATCTttgattttaaatctttaaattttgattgattaCAGGAGG
CAGGAAAATTCTAGACTGACTGATAAATGACTAGTGAAACTAATAATAGC
TAATTCGTAGCTTcaaatgtgc Coding sequence (CDS) from alignment at scaffold_248:296895..299066 >TCONS_00055051 ID=TCONS_00055051|Name=TCONS_00055051|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_248:296895..299066 (Clytia hemisphaerica)
ATGGAGATGGATCAGTTTTGTATAATATGTGGTAAAGGAGCTGATAAAGA
AGTTTTGAGTCAAGTGGGTAAAATGAAAAATCGAGAAAACCAAAAGGACA
ATCCCATAAACTCACTTATAATTTTAGCCAGAAAATGTGATTTGGACGAA
CTAGTAGCTAAGCTCACGAGGAACAAAGAAAATAACATTTTAACGTACAA
TCATCAATCTTGCAGAACAAACTTGAGGAACGCAGCTCGAAAAAGGAAAT
CGTCAGATGAAACTACAACAAGGTCAAGCAAACGTGTTTGTGGCAACCCT
TTTGACTTTAAGAAATTATGCTTTTACTGTGAAAGTCTGTGCGAATTCGA
TGACAGACACCCTGATCGTTTTAAAGAATATTGTAAAGTTGAAACGATAG
ATACAGACATCTTTAAGGAAACGCTTAACATATGTCAATCGCGTAATGAT
GATCACGCTATGAATGTTCAAAGACGTTTGCTGTCTGTTGTTGATCTCGT
TGCACCAGAAGCAAGGTATCATGTTGCTTGTAGAACGGCGTTTGAAGTTC
CTCCTGACCGTAAAACACCTGGTCGGCCAGTTTGCACAACGAAAAGCGAG
TTGTTCGAGCAAGCGTGTACTGATTTTCTTCAAGATGATGTCGAATTGTA
TACAGTTACAGAGTTTCACAATATGATGTCTTCCCTTGGCGATGAAGTAT
ATTCcgtgaaaatgaccaaaaataaaTTGGAAGAAAAGTACAAAAATTGC
ATTAACTTTGTTTCCAGAGAAGGAAAAAGCAATATTATATTACTGAACAG
AGCTGCTGAAGTACTATCGGAGAAATGGTACAAAGAAAGACAAAATGGAA
TCGGTGATGAAACTATTCGTATTGTAAGAACAGCTGGAGTTTTGTTAAAA
GAAGCCatcaaaaattacgaaaatgacTCAACAACTTACCCAACATGCGA
CGATATAAATGGTTTACGCGTGTATCACCAGTTGAAAGTATGGCGAGAGC
TCAGAAATACCGATTACATGCCACTTAACTGGGGGTGGCAGATGGTTTCT
GAATCCTTTACTCCAATCATGACAGATATTGAAGCTGGTCCCTCTGATCT
ATTGAAAGTTATTCGTTGTGGTTGTAAAGGTATGTGTGATACTTACAGGT
GCACGTGTCGTAAAGCTGGACTGAAATGTACTTACCTTTGTAAGGAGTGC
CATGGCACCTCTTGTACGAACACTGATGAAACTGACGATACTAACGATTC
TGAGGAGGATCTTAATGCTATATATAATGAAGACGAAGAAAGGAACTTTA
TGGAGATCTttgattttaaatctttaaattttgattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055051-exon-scaffold_248-1491911889:296895..299066 | TCONS_00055051-exon-scaffold_248-1491911889:296895..299066 | Clytia hemisphaerica | exon |
| TCONS_00055051-exon-scaffold_248-1510915933:296895..299066 | TCONS_00055051-exon-scaffold_248-1510915933:296895..299066 | Clytia hemisphaerica | exon |
| TCONS_00055051-exon-scaffold_248-1575043694:296895..299066 | TCONS_00055051-exon-scaffold_248-1575043694:296895..299066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:296895..299066 . |
Blast
The following BLAST results are available for this feature:
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