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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055047 ID=TCONS_00055047|Name=TCONS_00055047|organism=Clytia hemisphaerica|type=transcript|length=2337bp
AAACGAGaaacctttaaattctatataaaTTTTAAATATGATATTGATAG
ATGTTAAACACGACCTTACAAAATTGATTAAATATGCTAAGGATAAAGTT
TTGATCAAACTACAAAATGAGAACCTAGCCATGAAGTGAGACATCGAGAA
AAATTGAGTTAGATTCGAAATCCTTAATTTGTATTACAAATACCCCTACA
TCACTTTTCATTTGTGAACTTTatgtattttagaaaaatgaataaaaaca
aaatggatGACTTTTTTGATAAAGATTCACCACATGGCCTCGCCAAGCGA
GTAATCGAATTCCGTTATTTGCAGAAGAAGATCGCCTCGGCCCTCAATAC
CGAGGAACCATGCATTAGGTATAACTTCACTTATTTCGATGCTTTTTGCG
GTACTGGAATTTATCCGGTTCCCCAAGCGGAACAACAACCGGGCACTCAG
GCCCAGATCCACCGTCCTTTTCCACCGGAATACGGGTCACCCTTGGTCGC
TTTGCACACATTAGAGCAAATTTTTAACGGAAGGTATAATAAGTTATATC
CAAGAACAgcactttttgtttttgaggatGCTAATCGAACATATATTGAA
GAGCTGAAAAGAAACGTCTGGAAAAGAATATTAATAGATGCTGACAGACT
TGTAAATGACGGAAATGCGAACACATGGAGCTTTATTAGAACCAAAATAA
ACAATGTAATGCTGACCGTCACAATAATGTTCATTGTTGGTGAGTTCAGA
AATTTGACTCCTGCCATGCTGATTAATCAGAACGCTCTCAACCTATGCAC
ACCTATGACGTCATTTATCGATCCTTTTGGATTCTCTCATACTCCGATGG
ACCAAGTCATCTCGTTTCTTGGTGAAAGAAGAGATATCATTTTGTTCTTT
GGTGTTGAATCCATCAATCGATTTCAAGGGGTCTTGGAGCAAGGACATAA
TATGACACAACTAATGGGTACTACCAACTGGAGACATTTCTTCCACTgaa
tcatactttattggaaacACCGCAAAAAATGAAAGCTTACGTTTCTGCTT
ACCAGGCCTGTTTGAACCTCAAATGTTGTGAGCTGGGAATGGGACAAGCC
AGAACATGCCATATTTCAATGCGGAGAGGAACTGCAGCAGGATGCAATAA
AAGTTTCATCTATGATCTTATCTTTATTTCACTGGATCTCAGATCGTTAG
ATCGTATGAAGTATGCTATGGGTGTTGGAAGTCAAAATAACACAGAAGCC
TTAGACGATTTTGGACATGACTTGTATTTTTCCGATTTTCATTACGACGT
AAATGCCATTTGGGCTCCTTTGAGCTCAAGAACTATTGAAGCTGAAATTA
TCAAGCATGCTTGGAGTGGGAAATTTTGCACGTTTGGTCAGTTGAAAGAG
TGGATACTAACTGAAACACCTTTACAAATTCATTCCCGTGTTTTTGAAGA
TTTGGAGAGGGCTAAAATTCTGACGGTCACAACACCGGCTCAATACCGCA
CTAAAGTCCTTGTACCAGCAGTAGCAGCAGCCCCAAAAGTTGTTAACGAA
GTTGTAAATACGGAGACAGTTGTTCCTACCGTTGAAAATGTTCTGACTCC
TGCAGGAGTAATGTCTGTTGCCAGAACCACTATTGTGGGAGTACCTACGC
TTGTGCAGAATGTAGTAAATGTACCAGTCCCTACATTAACAGAAGTTATA
GTAATCAAAACTGATCCCCGAACCCGGAAACCGAAATTTCCAGAATATGT
TGGTAAGCTCAGTACGGATCCTGATGAAGATGAAATCAAGGGGCCAAGAT
ATAAATATCGAAATGATTGGAAGCTGCAGTTTGCTTCATGTGATTGCACC
GATTGCTTAAGTTACCTTATGAATAGAAAAGCTAAAATTCAGTAAATCTG
AATAATTGTTTATTACTATTGATcgagttgtttttattttacttgatcaa
aattgaatatgattagGGCCCGAAATTTCCAGACCATTCACCATCACGCT
GTGCTTTGATGGCATTGTTTTGTATTCATAAAGGCCTACTTTGAGGAAAT
TATCATTATTATCCACGGTAGctaattttctgttttttagTGCCGGCAAC
GaaatttagttcaattttttaaacaCCTAAACTCTATACATAGGATGATT
TGTAATGATTTTATTTGCTTTCTTACGATTCACATATACTTCCCGAATTG
CTTTCTTTTTCAATCATTGTATTGTTACAGTTTAGtaattcaaaaaagat
ttttcaacattttaccCTTTTTTAATACATttaattgaatttgattttta
cattttacctCCAATTAGATCTTATATTAATATAAAc Run BLAST on NCBI protein sequence of TCONS_00055047-protein >TCONS_00055047-protein ID=TCONS_00055047-protein|Name=TCONS_00055047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MKAYVSAYQACLNLKCCELGMGQARTCHISMRRGTAAGCNKSFIYDLIFI
SLDLRSLDRMKYAMGVGSQNNTEALDDFGHDLYFSDFHYDVNAIWAPLSS
RTIEAEIIKHAWSGKFCTFGQLKEWILTETPLQIHSRVFEDLERAKILTV
TTPAQYRTKVLVPAVAAAPKVVNEVVNTETVVPTVENVLTPAGVMSVART
TIVGVPTLVQNVVNVPVPTLTEVIVIKTDPRTRKPKFPEYVGKLSTDPDE
DEIKGPRYKYRNDWKLQFASCDCTDCLSYLMNRKAKIQ Run BLAST on NCBI transcript from alignment at scaffold_248:96493..98829 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055047 ID=TCONS_00055047|Name=TCONS_00055047|organism=Clytia hemisphaerica|type=transcript|length=2337bp|location=Sequence derived from alignment at scaffold_248:96493..98829 (Clytia hemisphaerica)
gTTTATATTAATATAAGATCTAATTGGaggtaaaatgtaaaaatcaaatt
caattaaATGTATTAAAAAAGggtaaaatgttgaaaaatcttttttgaat
taCTAAACTGTAACAATACAATGATTGAAAAAGAAAGCAATTCGGGAAGT
ATATGTGAATCGTAAGAAAGCAAATAAAATCATTACAAATCATCCTATGT
ATAGAGTTTAGGtgtttaaaaaattgaactaaatttCGTTGCCGGCActa
aaaaacagaaaattagCTACCGTGGATAATAATGATAATTTCCTCAAAGT
AGGCCTTTATGAATACAAAACAATGCCATCAAAGCACAGCGTGATGGTGA
ATGGTCTGGAAATTTCGGGCCctaatcatattcaattttgatcaagtaaa
ataaaaacaactcgATCAATAGTAATAAACAATTATTCAGATTTACTGAA
TTTTAGCTTTTCTATTCATAAGGTAACTTAAGCAATCGGTGCAATCACAT
GAAGCAAACTGCAGCTTCCAATCATTTCGATATTTATATCTTGGCCCCTT
GATTTCATCTTCATCAGGATCCGTACTGAGCTTACCAACATATTCTGGAA
ATTTCGGTTTCCGGGTTCGGGGATCAGTTTTGATTACTATAACTTCTGTT
AATGTAGGGACTGGTACATTTACTACATTCTGCACAAGCGTAGGTACTCC
CACAATAGTGGTTCTGGCAACAGACATTACTCCTGCAGGAGTCAGAACAT
TTTCAACGGTAGGAACAACTGTCTCCGTATTTACAACTTCGTTAACAACT
TTTGGGGCTGCTGCTACTGCTGGTACAAGGACTTTAGTGCGGTATTGAGC
CGGTGTTGTGACCGTCAGAATTTTAGCCCTCTCCAAATCTTCAAAAACAC
GGGAATGAATTTGTAAAGGTGTTTCAGTTAGTATCCACTCTTTCAACTGA
CCAAACGTGCAAAATTTCCCACTCCAAGCATGCTTGATAATTTCAGCTTC
AATAGTTCTTGAGCTCAAAGGAGCCCAAATGGCATTTACGTCGTAATGAA
AATCGGAAAAATACAAGTCATGTCCAAAATCGTCTAAGGCTTCTGTGTTA
TTTTGACTTCCAACACCCATAGCATACTTCATACGATCTAACGATCTGAG
ATCCAGTGAAATAAAGATAAGATCATAGATGAAACTTTTATTGCATCCTG
CTGCAGTTCCTCTCCGCATTGAAATATGGCATGTTCTGGCTTGTCCCATT
CCCAGCTCACAACATTTGAGGTTCAAACAGGCCTGGTAAGCAGAAACGTA
AGCTTTCATTTTTTGCGGTgtttccaataaagtatgattcAGTGGAAGAA
ATGTCTCCAGTTGGTAGTACCCATTAGTTGTGTCATATTATGTCCTTGCT
CCAAGACCCCTTGAAATCGATTGATGGATTCAACACCAAAGAACAAAATG
ATATCTCTTCTTTCACCAAGAAACGAGATGACTTGGTCCATCGGAGTATG
AGAGAATCCAAAAGGATCGATAAATGACGTCATAGGTGTGCATAGGTTGA
GAGCGTTCTGATTAATCAGCATGGCAGGAGTCAAATTTCTGAACTCACCA
ACAATGAACATTATTGTGACGGTCAGCATTACATTGTTTATTTTGGTTCT
AATAAAGCTCCATGTGTTCGCATTTCCGTCATTTACAAGTCTGTCAGCAT
CTATTAATATTCTTTTCCAGACGTTTCTTTTCAGCTCTTCAATATATGTT
CGATTAGCatcctcaaaaacaaaaagtgcTGTTCTTGGATATAACTTATT
ATACCTTCCGTTAAAAATTTGCTCTAATGTGTGCAAAGCGACCAAGGGTG
ACCCGTATTCCGGTGGAAAAGGACGGTGGATCTGGGCCTGAGTGCCCGGT
TGTTGTTCCGCTTGGGGAACCGGATAAATTCCAGTACCGCAAAAAGCATC
GAAATAAGTGAAGTTATACCTAATGCATGGTTCCTCGGTATTGAGGGCCG
AGGCGATCTTCTTCTGCAAATAACGGAATTCGATTACTCGCTTGGCGAGG
CCATGTGGTGAATCTTTATCAAAAAAGTCatccattttgtttttattcat
ttttctaaaatacatAAAGTTCACAAATGAAAAGTGATGTAGGGGTATTT
GTAATACAAATTAAGGATTTCGAATCTAACTCAATTTTTCTCGATGTCTC
ACTTCATGGCTAGGTTCTCATTTTGTAGTTTGATCAAAACTTTATCCTTA
GCATATTTAATCAATTTTGTAAGGTCGTGTTTAACATCTATCAATATCAT
ATTTAAAAtttatatagaatttaaaggtttCTCGTTT Coding sequence (CDS) from alignment at scaffold_248:96493..98829 >TCONS_00055047 ID=TCONS_00055047|Name=TCONS_00055047|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_248:96493..98829 (Clytia hemisphaerica)
TTACTGAATTTTAGCTTTTCTATTCATAAGGTAACTTAAGCAATCGGTGC
AATCACATGAAGCAAACTGCAGCTTCCAATCATTTCGATATTTATATCTT
GGCCCCTTGATTTCATCTTCATCAGGATCCGTACTGAGCTTACCAACATA
TTCTGGAAATTTCGGTTTCCGGGTTCGGGGATCAGTTTTGATTACTATAA
CTTCTGTTAATGTAGGGACTGGTACATTTACTACATTCTGCACAAGCGTA
GGTACTCCCACAATAGTGGTTCTGGCAACAGACATTACTCCTGCAGGAGT
CAGAACATTTTCAACGGTAGGAACAACTGTCTCCGTATTTACAACTTCGT
TAACAACTTTTGGGGCTGCTGCTACTGCTGGTACAAGGACTTTAGTGCGG
TATTGAGCCGGTGTTGTGACCGTCAGAATTTTAGCCCTCTCCAAATCTTC
AAAAACACGGGAATGAATTTGTAAAGGTGTTTCAGTTAGTATCCACTCTT
TCAACTGACCAAACGTGCAAAATTTCCCACTCCAAGCATGCTTGATAATT
TCAGCTTCAATAGTTCTTGAGCTCAAAGGAGCCCAAATGGCATTTACGTC
GTAATGAAAATCGGAAAAATACAAGTCATGTCCAAAATCGTCTAAGGCTT
CTGTGTTATTTTGACTTCCAACACCCATAGCATACTTCATACGATCTAAC
GATCTGAGATCCAGTGAAATAAAGATAAGATCATAGATGAAACTTTTATT
GCATCCTGCTGCAGTTCCTCTCCGCATTGAAATATGGCATGTTCTGGCTT
GTCCCATTCCCAGCTCACAACATTTGAGGTTCAAACAGGCCTGGTAAGCA
GAAACGTAAGCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055047-exon-scaffold_248-1491911889:96493..98829 | TCONS_00055047-exon-scaffold_248-1491911889:96493..98829 | Clytia hemisphaerica | exon |
| TCONS_00055047-exon-scaffold_248-1510915933:96493..98829 | TCONS_00055047-exon-scaffold_248-1510915933:96493..98829 | Clytia hemisphaerica | exon |
| TCONS_00055047-exon-scaffold_248-1575043694:96493..98829 | TCONS_00055047-exon-scaffold_248-1575043694:96493..98829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:96493..98829 . |
Blast
The following BLAST results are available for this feature:
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