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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055043 ID=TCONS_00055043|Name=TCONS_00055043|organism=Clytia hemisphaerica|type=transcript|length=1022bp
TTTAgttatcaattatttttagtttaattGGGCTTTGGGTTCCAGTTGGT
CAATATGTTCCATTTGAAGAGTACATTGGAATATTACATCTTGTCCGTTT
GCtcgtttttagattttattctcTCGAAAGTTCTCAACAGAAGATGGCTT
CAATATTTGACCACGTTCTTTGCAGACAACTGGTATGCTCAAAAGGAAGA
CGTAGCCAACAGTCCAAAATATACCAAATATGAAAACAGCATGCTCAAAT
CAGAGAAATCTCTCTTGCAAGGCCCAAATAGTGAACATTTGGCCTCTTAT
GAGGTTGCTAGAGGAAGTTGGACTAGTTGGTGGTCAAAGACGAATCAGGA
GTCAAATTGCGATTTCCGTTGGGTTCGAACTTCCGTGTTTCAGATCTTCG
TTGATGAATTACCATTTTCCAATAAAACTCTGAAAGCAGTTACCATCAAT
GAAACTTTGAGCATTAATTTCTTTGTTCCCACAAAAGAAGAGGTTTTGTT
TGCTAGacggaaaaagaaaaacagataCCCGACGCAACCTAAACAGAGCC
GCATAAGTATTGACAGCGTCACTAAACTTACGAGATGTAATCCGTCGGAA
AAAGCTGGGGAAATAAGGGTAGAAATATCCGCAACCACTTCGAGAAAATT
CGGCAAAACTAAACTGGATGATACGTCAGCGCTAGATGTTCCATTAGAAA
GAGGATCTTTAGACGATCAGGAAATTGAACAAAGTGACAGAAGTAAAGTT
GGTcggaagaaattttcagtttttctcaGGAAAGGGTTTTTATGTTGCAT
CCGACCTCCAAGTGATCATTGAGCAAAAGAACAAGACCCTTGATCAATCA
ATCACGTTGGTCATAGGAGTTTCATGAGGTGACCAGCCAGCCCATTGGTA
CAAGCAAAAATACATTCATAATACATTCATTATTTGCATGCAATGTAGCG
AAAGAAAACaagaaacagaaaaatcaacattcacaaacaaaaaaatgaag
aagtaaAATATAGCCTTTGcag Run BLAST on NCBI protein sequence of TCONS_00055043-protein >TCONS_00055043-protein ID=TCONS_00055043-protein|Name=TCONS_00055043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MFHLKSTLEYYILSVCSFLDFILSKVLNRRWLQYLTTFFADNWYAQKEDV
ANSPKYTKYENSMLKSEKSLLQGPNSEHLASYEVARGSWTSWWSKTNQES
NCDFRWVRTSVFQIFVDELPFSNKTLKAVTINETLSINFFVPTKEEVLFA
RRKKKNRYPTQPKQSRISIDSVTKLTRCNPSEKAGEIRVEISATTSRKFG
KTKLDDTSALDVPLERGSLDDQEIEQSDRSKVGRKKFSVFLRKGFLCCIR
PPSDH Run BLAST on NCBI transcript from alignment at scaffold_248:358472..360165- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055043 ID=TCONS_00055043|Name=TCONS_00055043|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at scaffold_248:358472..360165- (Clytia hemisphaerica)
TTTAGTTATCAATTATTTTTAGTTTAATTGGGCTTTGGGTTCCAGTTGGT
CAATATGTTCCATTTGAAGAGTACATTGGAATATTACATCTTGTCCGTTT
GCTCGTTTTTAGATTTTATTCTCTCGAAAGGTTTGTTGATAAATTGTTTG
GTTTGATACATATTTATTTCCACCTCGGGCGCAACATAAGTTTAAAACTC
TAAGACTATATACTTCCAAATTAGAAACTTTTTCGTTGAAGGGTTGGCAA
AAGACTAAAAATTCTATTTACAAAGGGAAGACTTTGTCTAGACAAGCTTA
TAAGCGTCATAATGAAAAAAGAGTACCAACAGAACTTTATAATCCTGAAA
CTCCATACTGGCGAAGAACTGAGACATAATTCATGAAAAGAGAGTATTGA
TACAGAGGCTTCATTAAAAATAGGAAGAATCTTGTATCCCTATGGTATTT
TGCATTGGCACAATATTTTATGCATTCAATTCAATATCCTGTTACTTAGC
TGGTTAGGAACTTGTTTCTCTAACTGTGTATTACAGAGAGATTTCTTAGT
GACTTTCAGCATCTTCAGTCGTTGCAGTGAAGCATCGCTTCGGTATGTTT
TTGTTACGGAGCGAATGTGTTCATATTGGTTTCTGAACGTTTCAGAGCAA
GAAAACGAAACAGTTTCATTCCGATGAAAATAGTTCAGCGTAACTGTTTT
GATCCGTTTTGGATATTTCAAATTTGTTGCCAACACAATGTTTCGGAGCC
GTTTGTTGTCAGAACATAGTATTAATCTGTAATATTTTCTTGTTTACTGT
AGTTCTCAACAGAAGATGGCTTCAATATTTGACCACGTTCTTTGCAGACA
ACTGGTATGCTCAAAAGGAAGACGTAGCCAACAGTCCAAAATATACCAAA
TATGAAAACAGCATGCTCAAATCAGAGAAATCTCTCTTGCAAGGCCCAAA
TAGTGAACATTTGGCCTCTTATGAGGTTGCTAGAGGAAGTTGGACTAGTT
GGTGGTCAAAGACGAATCAGGAGTCAAATTGCGATTTCCGTTGGGTTCGA
ACTTCCGTGTTTCAGATCTTCGTTGATGAATTACCATTTTCCAATAAAAC
TCTGAAAGCAGTTACCATCAATGAAACTTTGAGCATTAATTTCTTTGTTC
CCACAAAAGAAGAGGTTTTGTTTGCTAGACGGAAAAAGAAAAACAGATAC
CCGACGCAACCTAAACAGAGCCGCATAAGTATTGACAGCGTCACTAAACT
TACGAGATGTAATCCGTCGGAAAAAGCTGGGGAAATAAGGGTAGAAATAT
CCGCAACCACTTCGAGAAAATTCGGCAAAACTAAACTGGATGATACGTCA
GCGCTAGATGTTCCATTAGAAAGAGGATCTTTAGACGATCAGGAAATTGA
ACAAAGTGACAGAAGTAAAGTTGGTCGGAAGAAATTTTCAGTTTTTCTCA
GGAAAGGGTTTTTATGTTGCATCCGACCTCCAAGTGATCATTGAGCAAAA
GAACAAGACCCTTGATCAATCAATCACGTTGGTCATAGGAGTTTCATGAG
GTGACCAGCCAGCCCATTGGTACAAGCAAAAATACATTCATAATACATTC
ATTATTTGCATGCAATGTAGCGAAAGAAAACAAGAAACAGAAAAATCAAC
ATTCACAAACAAAAAAATGAAGAAGTAAAATATAGCCTTTGCAG Coding sequence (CDS) from alignment at scaffold_248:358472..360165- >TCONS_00055043 ID=TCONS_00055043|Name=TCONS_00055043|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_248:358472..360165- (Clytia hemisphaerica)
TTCTCAACAGAAGATGGCTTCAATATTTGACCACGTTCTTTGCAGACAAC
TGGTATGCTCAAAAGGAAGACGTAGCCAACAGTCCAAAATATACCAAATA
TGAAAACAGCATGCTCAAATCAGAGAAATCTCTCTTGCAAGGCCCAAATA
GTGAACATTTGGCCTCTTATGAGGTTGCTAGAGGAAGTTGGACTAGTTGG
TGGTCAAAGACGAATCAGGAGTCAAATTGCGATTTCCGTTGGGTTCGAAC
TTCCGTGTTTCAGATCTTCGTTGATGAATTACCATTTTCCAATAAAACTC
TGAAAGCAGTTACCATCAATGAAACTTTGAGCATTAATTTCTTTGTTCCC
ACAAAAGAAGAGGTTTTGTTTGCTAGACGGAAAAAGAAAAACAGATACCC
GACGCAACCTAAACAGAGCCGCATAAGTATTGACAGCGTCACTAAACTTA
CGAGATGTAATCCGTCGGAAAAAGCTGGGGAAATAAGGGTAGAAATATCC
GCAACCACTTCGAGAAAATTCGGCAAAACTAAACTGGATGATACGTCAGC
GCTAGATGTTCCATTAGAAAGAGGATCTTTAGACGATCAGGAAATTGAAC
AAAGTGACAGAAGTAAAGTTGGTCGGAAGAAATTTTCAGTTTTTCTCAGG
AAAGGGTTTTTATGTTGCATCCGACCTCCAAGTGATCATTGAATGTTCCA
TTTGAAGAGTACATTGGAATATTACATCTTGTCCGTTTGCTCGTTTTTAG
ATTTTATTCTCTCGAAAGTTCTCAACAGAAGATGGCTTCAATATTTGACC
ACGTTCTTTGCAGACAACTGGTATGCTCAAAAGGAAGACGTAGCCAACAG
TCCAAAATATACCAAATATGAAAACAGCATGCTCAAATCAGAGAAATCTC
TCTTGCAAGGCCCAAATAGTGAACATTTGGCCTCTTATGAGGTTGCTAGA
GGAAGTTGGACTAGTTGGTGGTCAAAGACGAATCAGGAGTCAAATTGCGA
TTTCCGTTGGGTTCGAACTTCCGTGTTTCAGATCTTCGTTGATGAATTAC
CATTTTCCAATAAAACTCTGAAAGCAGTTACCATCAATGAAACTTTGAGC
ATTAATTTCTTTGTTCCCACAAAAGAAGAGGTTTTGTTTGCTAGACGGAA
AAAGAAAAACAGATACCCGACGCAACCTAAACAGAGCCGCATAAGTATTG
ACAGCGTCACTAAACTTACGAGATGTAATCCGTCGGAAAAAGCTGGGGAA
ATAAGGGTAGAAATATCCGCAACCACTTCGAGAAAATTCGGCAAAACTAA
ACTGGATGATACGTCAGCGCTAGATGTTCCATTAGAAAGAGGATCTTTAG
ACGATCAGGAAATTGAACAAAGTGACAGAAGTAAAGTTGGTCGGAAGAAA
TTTTCAGTTTTTCTCAGGAAAGGGTTTTTATGTTGCATCCGACCTCCAAG
TGATCATTGAATGTTCCATTTGAAGAGTACATTGGAATATTACATCTTGT
CCGTTTGCTCGTTTTTAGATTTTATTCTCTCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055043-exon-scaffold_248-1575043694:360036..360165 | TCONS_00055043-exon-scaffold_248-1575043694:360036..360165 | Clytia hemisphaerica | exon |
| TCONS_00055043-exon-scaffold_248-1575043694:358472..359363 | TCONS_00055043-exon-scaffold_248-1575043694:358472..359363 | Clytia hemisphaerica | exon |
| TCONS_00055043-exon-scaffold_248-1510915933:360036..360165 | TCONS_00055043-exon-scaffold_248-1510915933:360036..360165 | Clytia hemisphaerica | exon |
| TCONS_00055043-exon-scaffold_248-1510915933:358472..359363 | TCONS_00055043-exon-scaffold_248-1510915933:358472..359363 | Clytia hemisphaerica | exon |
| TCONS_00055043-exon-scaffold_248-1491911889:360036..360165 | TCONS_00055043-exon-scaffold_248-1491911889:360036..360165 | Clytia hemisphaerica | exon |
| TCONS_00055043-exon-scaffold_248-1491911889:358472..359363 | TCONS_00055043-exon-scaffold_248-1491911889:358472..359363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:358472..360165 - |
Blast
The following BLAST results are available for this feature:
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