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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055038 ID=TCONS_00055038|Name=TCONS_00055038|organism=Clytia hemisphaerica|type=transcript|length=2388bp
GGGTGGAAAGGTGTTGGAAAGGGCGGCCAATGGAGAGGGGAAGAGGGCGA
ACGGAAAAAGACGGCTGTTTATGATTATATCTGGGAAGAAGAGGAGaTGG
CGGATGAGATATGGGACGACCCTACTTCAGCGCATGGCAAGAAGACTGGG
GCGAAAGAGACTACCACGCATGTCTCGATCCATACCCTTCATTTGGACGG
TTTGAGAGAATTGTTCAGACATTTCTTGAAGTTGCCTGATGGTGCTATTG
TGGAGGTTTTCGGTGAAATGAACATCCCCGGAATCGATGAAGGTGTAAAA
CAGGCTCTCATTAAACGTACCACCTTCCAGACGCTcaataacaataacaa
caataacaacaactTACGTAATCGACATTCATCACGTGCAAGCGTATTAT
CCTTACGTAAAGAGAACTTGCAACCACACACGGTTGCCACGGACGAAAGT
GATGGTCTCGGCATGAAGTCATCGCCTGGTGATTATCTTTTGGGAATACC
AGCTGCCAGCTCTCAAGTTTGAACAAGTTGACCTTGTTTTTATGTTGCAC
ATTATGATATTACCCCAGTCTTCGTCCACTTTGAGTATGAACAAAATGGA
TAAGACAAAACCTGACAAAAAAAGGTTCATATAACGTCAGTTGAATGTTG
AAAAGACGTTGTGGACAAGTTAAGTTAGAAGCAAGCAAATGAGACTATTC
TTTTGGTTAGATATGACGTACATTTCCATATGATCTCCATTGACATACAA
GTCTAAGactagactggcacgccagtcgggctggaacggtatcaggcggg
aaaagtgagcgtaggagttaggtaagcataggaagaaattttgtcggcgg
caagggctctcaccaacttttgctcgcgttctcctacgcagctcctattc
tagcaaacgcccacCGCTTTTATGTTCctgccctctgacatgattaatta
acagactagtttgctagtcaaGTCTAAGACTTGAAACAGGGAAGTAAAGG
AAACATTACAATTAAAACTAAGGGggttatttatattttaaatttcatgc
ATGTTTCACTATAGCGACTCTCAGAGTTTTTAAGCGCCCTGTCAAATCTA
CTTTTGCTTTATTCTTGAACCTTAATCGATAATAATCATCCTTCCTTCCA
TCTGTTAGGGAATTTGAGTTTGCGAcccttttttttatattttaatatat
tttaatgGATGTTaatgattttattatttaaCTTAATTATTATTTTACGA
GAAAGTTATTTTAAATGACTTTAATCCtgacattttttattatttttaaa
aactgaaattattgttattattattaaccAGTTTTATTTTGAGACTTTTA
CAAAACTGAAGTTATCACGTAAGGTGTCACGAAAGTGCATGCTTGTTTTG
TTATAAAACAATCTGGAAAATCGAATTGCCTGCTTTTTTCTGAGATTTTC
AAAAGCCTTCATGATgttttttcacttgcgaattttgtaatatttttgat
gtaaattttttaatatcGGTGTAAAGTTGAGTATAATTATaatattgatt
attttttaagtaTCGGATATTGTTATGcacttttatgtttttaatggTGG
GACCGAATTATTATATGTATTATATGAATGGGAAAGAAATTTaactctag
tttagacggtctAATTTTCGGTCTGTCTATTCTAATTTTAAATTAAagtg
ggcagaaagttggctgtctaaagtcaatacGTTGCTATCTTTTGAAGTCA
ATGTAATGACTTCAATTTTGGGCACTCAACAAAAAATTTGGTCGATTGCT
CGAATGCCTTAAAAATTTGCCGGCAACTTCTACGTAAGTAATAATTATAA
CAAGCGTCCTATATTCGCGGAATTGATTATATAAAAAGAACGATTTCACG
ATTGAGGTATAGGTATAAGAGAGTGTCCCACTGACTAAgtgcgaaaataa
aaaaatgtagtgtttccggaaaccggccgggtgaaaacataaaattttct
gacccggccgcagactatgggttcatctatatggttcatcataaagaaaa
tcaagttgaccgtgttcaagctatcaaacgtcgtttggttagatattccc
gcttgtaaatcaaattttgtttgttagtagttgatacattagaaTTCAGG
GCTTACtgcatactgtttgtacataaaaattatctttaaagttatatttc
aatgattttaagttttcaaaaaaagcaacaaacaaaatttttccgaccgg
ccgcatgagagcttttttcattcacccgcattccggaaacacagATTTTT
TAACTAATTTATATTTATGTAATAAGAAgatgattttggaaaattgagaT
TATAACACAAACTCTGTAAAAAGACAATAACATTAAAC Run BLAST on NCBI transcript from alignment at scaffold_248:224270..228029- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055038 ID=TCONS_00055038|Name=TCONS_00055038|organism=Clytia hemisphaerica|type=transcript|length=3760bp|location=Sequence derived from alignment at scaffold_248:224270..228029- (Clytia hemisphaerica)
GGGTGGAAAGGTGTTGGAAAGGGCGGCCAATGGAGAGGGGAAGAGGGCGA
ACGGAAAAAGACGGCTGTTTATGATTATATCTGGGAAGAAGAGGAGGTTT
GTTTTCTTGAATTACACACTTCCTAAGTGAGGGTGGAGGAGGGTGGAAAG
GTGTTGGAAAGGGCGGCCAATGGAGAGGGGAAGAGGGCGAACGGAAAAAG
ACGGCTGTTTATGATTATATCTGGGAAGAAGAGGAGGTTTGTTTTCTTGA
ATTACACACTTCCTAAGTGAGGGTGGAAAGGTGTAGGAAAGGGCGGGCAA
TAGACAATGAGGCTTGGAAAAGAAAAATTGTGATTGTTGGCCTCTAATTC
ATATTCTCCTCCCGTTTTTCTATTTTTGAGGGTGAGGGTGAGGGTGAGGG
TGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGTG
AGGGTGAGGGGCGAGAGGTATCTATGAAAAAGGGTGATTATTTATTAAAA
TCTGTATATCAGAGAACTATACATGGAAAGACTCGAATTTTTTTTATCAA
AATTGTTGAATTTTATATCGAACAGAAAAGAAGAGACACTAACTGTCTGT
CAAAGACTCAAATATGGCTTCCACCCTACACAAACAAAAACTAAACTCCA
CTATTTTTTGATAGCCTATTTCTCACTTTTTTTAAGATGGCGGATGAGAT
ATGGGACGACCCTACTTCAGCGCATGGCAAGAAGACTGGGGCGAAAGAGA
CTACCACGCATGTCTCGATCCATACCCTTCATTTGGACGGTTTGAGAGAA
TTGTTCAGACATTTCTTGAAGTTGCCTGATGGTGCTATTGTGGAGGTGAG
AGCATTTTTAAATCATCGAATCTCTTGACTTGATCTCCTTTATATAAAAT
GGGGCGCAAACCGGCCAACATGTTTGCCAACATTTTTGAACCAACATATC
GGCCAACATGTTGGTACGGATTGCGGTCCTGCATTAAAAAAAACAAACAA
AAAAACAAGCAGCCAACATTACGAAATGTTCATTCATTTGTTTTTGACTA
CCAATGAAGGGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGT
TGGTCGTTAAGATGTAATAAAAGAATCTTATTACTTTTTCTAAAGAACGC
GTCATCTCTATCACTTTAAATGATCAATTAGTGTAAAAACTCCAAGGCAT
CTCCAATGAAAAAGCATTCGAAAAAAAGTAAAAATAACGCTCGAAAACTA
AAATGTTGGTCGAAATGTTGGCCATGTTGGTTACCTAGCGCAAAACGACA
AACATGCCAATTTTGGCGGAAATGTTGGCCAACATTTATTAAATATTTAA
TAAATGTTGGCCAACATTTTTTGAGATTTCTTTCTTCTCGAGCATGTTGG
CGCCTACCGCAAACCGGCCAACATTGTTTACACGGTTTGCGCTCCACTTA
AATAACTTGACCACAAATTTTCGACACTCATTTTGGAGTAGTCATTGATA
TTTTTGAGGTATAGTCGAAAAGGGGGTTTAGATTGACGTACTCATTCATT
ACTTTCAATATAGCTTATCAATATCTCTTTATATGCAAACCACATTGTCT
AAACAATCTTAATCTTCTTTTTCTCAGGTTTTCGGTGAAATGAACATCCC
CGGAATCGATGAAGGTGTAAAACAGGCTCTCATTAAACGTACCACCTTCC
AGACGCTCAATAACAATAACAACAATAACAACAACTTACGTAATCGACAT
TCATCACGTGCAAGCGTATTATCCTTACGTAAAGAGAACTTGCAACCACA
CACGGTTGCCACGGACGAAAGTGATGGTCTCGGCATGAAGTCATCGCCTG
GTGATTATCTTTTGGGAATACCAGCTGCCAGCTCTCAAGTTTGAACAAGT
TGACCTTGTTTTTATGTTGCACATTATGATATTACCCCAGTCTTCGTCCA
CTTTGAGTATGAACAAAATGGATAAGACAAAACCTGACAAAAAAAGGTTC
ATATAACGTCAGTTGAATGTTGAAAAGACGTTGTGGACAAGTTAAGTTAG
AAGCAAGCAAATGAGACTATTCTTTTGGTTAGATATGACGTACATTTCCA
TATGATCTCCATTGACATACAAGTCTAAGACTAGACTGGCACGCCAGTCG
GGCTGGAACGGTATCAGGCGGGAAAAGTGAGCGTAGGAGTTAGGTAAGCA
TAGGAAGAAATTTTGTCGGCGGCAAGGGCTCTCACCAACTTTTGCTCGCG
TTCTCCTACGCAGCTCCTATTCTAGCAAACGCCCACCGCTTTTATGTTCC
TGCCCTCTGACATGATTAATTAACAGACTAGTTTGCTAGTCAAGTCTAAG
ACTTGAAACAGGGAAGTAAAGGAAACATTACAATTAAAACTAAGGGGGTT
ATTTATATTTTAAATTTCATGCATGTTTCACTATAGCGACTCTCAGAGTT
TTTAAGCGCCCTGTCAAATCTACTTTTGCTTTATTCTTGAACCTTAATCG
ATAATAATCATCCTTCCTTCCATCTGTTAGGGAATTTGAGTTTGCGACCC
TTTTTTTTATATTTTAATATATTTTAATGGATGTTAATGATTTTATTATT
TAACTTAATTATTATTTTACGAGAAAGTTATTTTAAATGACTTTAATCCT
GACATTTTTTATTATTTTTAAAAACTGAAATTATTGTTATTATTATTAAC
CAGTTTTATTTTGAGACTTTTACAAAACTGAAGTTATCACGTAAGGTGTC
ACGAAAGTGCATGCTTGTTTTGTTATAAAACAATCTGGAAAATCGAATTG
CCTGCTTTTTTCTGAGATTTTCAAAAGCCTTCATGATGTTTTTTCACTTG
CGAATTTTGTAATATTTTTGATGTAAATTTTTTAATATCGGTGTAAAGTT
GAGTATAATTATAATATTGATTATTTTTTAAGTATCGGATATTGTTATGC
ACTTTTATGTTTTTAATGGTGGGACCGAATTATTATATGTATTATATGAA
TGGGAAAGAAATTTAACTCTAGTTTAGACGGTCTAATTTTCGGTCTGTCT
ATTCTAATTTTAAATTAAAGTGGGCAGAAAGTTGGCTGTCTAAAGTCAAT
ACGTTGCTATCTTTTGAAGTCAATGTAATGACTTCAATTTTGGGCACTCA
ACAAAAAATTTGGTCGATTGCTCGAATGCCTTAAAAATTTGCCGGCAACT
TCTACGTAAGTAATAATTATAACAAGCGTCCTATATTCGCGGAATTGATT
ATATAAAAAGAACGATTTCACGATTGAGGTATAGGTATAAGAGAGTGTCC
CACTGACTAAGTGCGAAAATAAAAAAATGTAGTGTTTCCGGAAACCGGCC
GGGTGAAAACATAAAATTTTCTGACCCGGCCGCAGACTATGGGTTCATCT
ATATGGTTCATCATAAAGAAAATCAAGTTGACCGTGTTCAAGCTATCAAA
CGTCGTTTGGTTAGATATTCCCGCTTGTAAATCAAATTTTGTTTGTTAGT
AGTTGATACATTAGAATTCAGGGCTTACTGCATACTGTTTGTACATAAAA
ATTATCTTTAAAGTTATATTTCAATGATTTTAAGTTTTCAAAAAAAGCAA
CAAACAAAATTTTTCCGACCGGCCGCATGAGAGCTTTTTTCATTCACCCG
CATTCCGGAAACACAGATTTTTTAACTAATTTATATTTATGTAATAAGAA
GATGATTTTGGAAAATTGAGATTATAACACAAACTCTGTAAAAAGACAAT
AACATTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055038-exon-scaffold_248-1575043694:227934..228029 | TCONS_00055038-exon-scaffold_248-1575043694:227934..228029 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1575043694:227185..227343 | TCONS_00055038-exon-scaffold_248-1575043694:227185..227343 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1575043694:224270..226402 | TCONS_00055038-exon-scaffold_248-1575043694:224270..226402 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1510915933:227934..228029 | TCONS_00055038-exon-scaffold_248-1510915933:227934..228029 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1510915933:227185..227343 | TCONS_00055038-exon-scaffold_248-1510915933:227185..227343 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1510915933:224270..226402 | TCONS_00055038-exon-scaffold_248-1510915933:224270..226402 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1491911889:227934..228029 | TCONS_00055038-exon-scaffold_248-1491911889:227934..228029 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1491911889:227185..227343 | TCONS_00055038-exon-scaffold_248-1491911889:227185..227343 | Clytia hemisphaerica | exon |
| TCONS_00055038-exon-scaffold_248-1491911889:224270..226402 | TCONS_00055038-exon-scaffold_248-1491911889:224270..226402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:224270..228029 - |
Blast
The following BLAST results are available for this feature:
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