|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055019 ID=TCONS_00055019|Name=TCONS_00055019|organism=Clytia hemisphaerica|type=transcript|length=862bp
AAAAAACACAATAAAATTTGAGTTTCTAGAACTTTCTAAAGGCTCCGGTT
TCCACTCTCTGTAGAATGATCGCCAACAAAGCCTCTTTGTGAAATCTTAG
CTAGTGAAAACCAGGCAGTGACAATGGAAAAATAATAAGTGCttactttt
gcaaaatcaaatttcagagtCTTAGAAGTTTGAGATTTCAGTGTGGAAAA
AATAATCTAGAGAGGGTTTGAGATCGATTTTTTGAAGGTTGGAATAAAAC
TTTCGGAGGTTATGAGATCTCAAACAAAATTGGCCGAGTATAAAAGCTCG
cgagaaaaaatgaagaaaaaaattcgcaacaacaaaaaagtaaatGATGG
CACAAGACAAAACTTTGAATTCTTTGACATTAGAAggcaatattttcaga
attaacAACACAGATTTTCAGGTTTCTAGGCCAGGTGCACCAACTATCAC
TTTTGTTTTACTGGAGACCTTAAAACCGTTTCGTAGAAGTCAAGAAGTTG
TGGAGGACATCAGACCTAGAAGACAACCCACTGAAAATATTGATCAAACC
ATGGGAAATATTGGCATCACTGAAAATGGCGTCAAAGTGCCAACAGAAAA
TACAGACCGAAGCATGCTGTTAACAGATCAGGATCAATAAATTGGTATCG
AAGAAAACACGACAGAGCTATTGGAGAAATATGGATCGACCCTCTACACC
GAAAGACCAAAACAAAATGGGTGTTTGCTTGTCGAGGTTTATTGTAAACA
ATTTGCGATATGCTCTActtgaattttaaaaaagaaacaaattctTTATT
TAATGCATATTTTTTCAtgtcaaatttgtaaataaataagtcatttattt
ttaaagaaaaac Run BLAST on NCBI transcript from alignment at scaffold_248:380934..382368+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055019 ID=TCONS_00055019|Name=TCONS_00055019|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at scaffold_248:380934..382368+ (Clytia hemisphaerica)
AAAAAACACAATAAAATTTGAGTTTCTAGAACTTTCTAAAGGCTCCGGTT
TCCACTCTCTGTAGAATGATCGCCAACAAAGCCTCTTTGTGAAATCTTAG
CTAGTGAAAACCAGGCAGTGACAATGGAAAAATAATAAGTGCttactttt
gcaaaatcaaatttcagagtCTTAGAAGTTTGAGATTTCAGTGTGGAAAA
AATAATCTAGAGAGGGTTTGAGATCGATTTTTTGAAGGTTGGAATAAAAC
TTTCGGAGGTTATGAGATCTCAAACAAAATTGGCCGAGTATAAAAGCTCG
cgagaaaaaatgaagaaaaaaattcgcaacaacaaaaaagtaaatGATGG
CACAAGACAAAACTTTGAATTCTTTGACATTAGAAggcaatattttcaga
attaacAACACAGATTTTCAGGTTTCTAGGCCAGGTGCACCAACTATCAC
TTTTGTTTTACTGGAGACCTTAAAACCGTTTCGTAGAAGTCAAGAAGTTG
TGGAGGACATCAGACCTAGAAGACAACCCACTGAAAATATTGATCAAACC
ATGGGAAATATTGGCATCACTGAAAATGGCGTCAAAGTGCCAACAGAAAA
TACAGACCGAAGCATGCTGTTAACAGTAAGTGATGGTACTacatttttaa
gttaaagagcTATTCGTTGAGATAGACCGCTGAAACCATTAGACTAAAAC
ATTAGAGTCTTTTGGTTTTCTTTCATAAATCAATCACTTTTGAACCTCAC
AAATATCTTATGGTCTGTATCAAACAATCTTCAATGTAAATATAAGAGGC
Tacaattttgatagaattcgaattaaataacggttgaaaagatatttgta
agtgtgaaataatcaaataaataggaaaaatcaatttcttgtagaattca
aatttttacagtaGAATTTTTTTGTTCTGAGAATACCGTCTTTTTAAAAC
TCTTTGAATGACATACAACCCACTGTTCATCACTGATTGACTAAAATCat
ggaaaacaacaaaaaaatgcccTCTTTTATAATCTTCAAGTATCTACAAC
TAAGCACAGAAGAGAAGTTAATTTTCGTTTATAATTGTGCCTTGAATACT
TGATTTAGTCTGGTGAAATgttaactttttaaaaagaaactagatttcaa
aaaaatggcaaattccCTCTCATTTTATGATTCATTCCAATTATTCAGGA
TCAGGATCAATAAATTGGTATCGAAGAAAACACGACAGAGCTATTGGAGA
AATATGGATCGACCCTCTACACCGAAAGACCAAAACAAAATGGGTGTTTG
CTTGTCGAGGTTTATTGTAAACAATTTGCGATATGCTCTActtgaatttt
aaaaaagaaacaaattctTTATTTAATGCATATTTTTTCAtgtcaaattt
gtaaataaataagtcatttatttttaaagaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055019-exon-scaffold_248-1491911889:380934..381558 | TCONS_00055019-exon-scaffold_248-1491911889:380934..381558 | Clytia hemisphaerica | exon |
| TCONS_00055019-exon-scaffold_248-1510915933:380934..381558 | TCONS_00055019-exon-scaffold_248-1510915933:380934..381558 | Clytia hemisphaerica | exon |
| TCONS_00055019-exon-scaffold_248-1575043694:380934..381558 | TCONS_00055019-exon-scaffold_248-1575043694:380934..381558 | Clytia hemisphaerica | exon |
| TCONS_00055019-exon-scaffold_248-1491911889:382132..382368 | TCONS_00055019-exon-scaffold_248-1491911889:382132..382368 | Clytia hemisphaerica | exon |
| TCONS_00055019-exon-scaffold_248-1510915933:382132..382368 | TCONS_00055019-exon-scaffold_248-1510915933:382132..382368 | Clytia hemisphaerica | exon |
| TCONS_00055019-exon-scaffold_248-1575043694:382132..382368 | TCONS_00055019-exon-scaffold_248-1575043694:382132..382368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:380934..382368 + |
Blast
The following BLAST results are available for this feature:
|
