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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054987 ID=TCONS_00054987|Name=TCONS_00054987|organism=Clytia hemisphaerica|type=transcript|length=1418bp
CTGAACTATTAGAGAACTGGAAGTGTACATGGATCTTTTCCGATGCAAAG
GTCGAATGTATTCGACCAAATTTGACATAGAAAATTTTGGTCATCTGGAG
ACAATAATTCttcaaaaactaaaattgtgaaaaaaatcaaacattattTG
GAACTGTACCGAATGATAATAATTGtcttgaaatttatcaaaaaattagt
TAACTCTCGATTTTTTTTCGGTAAAAATCTAAATATcctaaattcgatat
ttttagagtttaaatttcgaaatttctttaaaaaggtCAAGggttttgaa
cattttgaccGATTTCCCTATGGCGTTTAATGAAAGAGCGAGCTGGAACA
CCTCAAAAGTGTGCAAAGACGCTAGAAGGCAGAAAACTGAACATAATACT
TTATGCTTTCtaaattctttaaagaaaactATCTATGGCTATaatacaaa
ttcaaaattttcagtttttatgtacaaaaatttacaaaagtaATATAACG
GCTCAAAATTAATGCCATGCTGATTTAATGAGCAAGTTCTTGAAGCACCT
GACGAAATTGAGGGCTTGATGGAACTTTAAGGGATAGTCTTTGTTTAGTA
CAACAGGCTGATTCTTCAGAGATGGTACTCCAACTACGACGGTTCAATTT
GttggaagaaagttttttgTGATGACCGATTGACGAGGAGGAAAGGATTT
CACTTCTTGAACGTAAGCGAGTGTATTGTTGCAAATATGAGGTCGGTTTC
TTCTGCAGGGACGGAAGGGTTGTTGATTTGTGTTGCTTGTTTGTTCGTAA
GTCAGTGATCGTTTGCGTCCTCATTTTCTCTGTTGTTGGTTTGTTAATCT
TTGGAAGCGTCGATGGAGCTTTGTTCATTTTGAGGCTCAGTTGATGATGA
TAGCTGTTGTAGCAGTTGGTTGTGTTTGTTGTGTGGTGAAAACTTCGACC
GTTAGCACCATTTATATAGCATACCATGTAGACAGCGGTTAAGTTGGTTT
ACGCGTAGGTGTTCAGTCAGTCGCTTTGCAAAGGAAATGTTTTCAAGACA
GACTACTTTTAGAGAAAAGACGTTTTAAATAAGgtaacaaaaataaatca
agcAGCTTGTTGATATTCTGAAGAACTTCTCATATTTCAGGCGCGCTTAA
GTAAACGGACCTATCCTAAACGATTAAGGCTTCGTCAATGGTACTAAAAA
TACTCAAGTTTCATTGAACATTTGAGTGCAAGACCTCATGATCGATAAAT
ACTTTTAGTAAAAGTAAATCAATCTTTGAACATTTTTGGGGAGCTGGAGA
AAGTAGTCGAATCTTCTTCACCAAACAAATAAATCTACGCCATCTTCAAC
TCGTTTTTCATTGAATAGCGTGCTTCTATTATATAAACTTGTAACTTAAT
TTGCCCTTTATTAAGTGC Run BLAST on NCBI protein sequence of TCONS_00054987-protein >TCONS_00054987-protein ID=TCONS_00054987-protein|Name=TCONS_00054987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MVCYINGANGRSFHHTTNTTNCYNSYHHQLSLKMNKAPSTLPKINKPTTE
KMRTQTITDLRTNKQHKSTTLPSLQKKPTSYLQQYTRLRSRSEILSSSSI
GHHKKLSSNKLNRRSWSTISEESACCTKQRLSLKVPSSPQFRQVLQELAH Run BLAST on NCBI transcript from alignment at scaffold_247:328651..330068 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054987 ID=TCONS_00054987|Name=TCONS_00054987|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at scaffold_247:328651..330068 (Clytia hemisphaerica)
GCACTTAATAAAGGGCAAATTAAGTTACAAGTTTATATAATAGAAGCACG
CTATTCAATGAAAAACGAGTTGAAGATGGCGTAGATTTATTTGTTTGGTG
AAGAAGATTCGACTACTTTCTCCAGCTCCCCAAAAATGTTCAAAGATTGA
TTTACTTTTACTAAAAGTATTTATCGATCATGAGGTCTTGCACTCAAATG
TTCAATGAAACTTGAGTATTTTTAGTACCATTGACGAAGCCTTAATCGTT
TAGGATAGGTCCGTTTACTTAAGCGCGCCTGAAATATGAGAAGTTCTTCA
GAATATCAACAAGCTgcttgatttatttttgttacCTTATTTAAAACGTC
TTTTCTCTAAAAGTAGTCTGTCTTGAAAACATTTCCTTTGCAAAGCGACT
GACTGAACACCTACGCGTAAACCAACTTAACCGCTGTCTACATGGTATGC
TATATAAATGGTGCTAACGGTCGAAGTTTTCACCACACAACAAACACAAC
CAACTGCTACAACAGCTATCATCATCAACTGAGCCTCAAAATGAACAAAG
CTCCATCGACGCTTCCAAAGATTAACAAACCAACAACAGAGAAAATGAGG
ACGCAAACGATCACTGACTTACGAACAAACAAGCAACACAAATCAACAAC
CCTTCCGTCCCTGCAGAAGAAACCGACCTCATATTTGCAACAATACACTC
GCTTACGTTCAAGAAGTGAAATCCTTTCCTCCTCGTCAATCGGTCATCAc
aaaaaactttcttccaaCAAATTGAACCGTCGTAGTTGGAGTACCATCTC
TGAAGAATCAGCCTGTTGTACTAAACAAAGACTATCCCTTAAAGTTCCAT
CAAGCCCTCAATTTCGTCAGGTGCTTCAAGAACTTGCTCATTAAATCAGC
ATGGCATTAATTTTGAGCCGTTATATtacttttgtaaatttttgtacata
aaaactgaaaattttgaatttgtattATAGCCATAGATagttttctttaa
agaatttaGAAAGCATAAAGTATTATGTTCAGTTTTCTGCCTTCTAGCGT
CTTTGCACACTTTTGAGGTGTTCCAGCTCGCTCTTTCATTAAACGCCATA
GGGAAATCggtcaaaatgttcaaaaccCTTGacctttttaaagaaatttc
gaaatttaaactctaaaaatatcgaatttaggATATTTAGATTTTTACCG
AAAAAAAATCGAGAGTTAactaattttttgataaatttcaagaCAATTAT
TATCATTCGGTACAGTTCCAaataatgtttgatttttttcacaattttag
tttttgaaGAATTATTGTCTCCAGATGACCAAAATTTTCTATGTCAAATT
TGGTCGAATACATTCGACCTTTGCATCGGAAAAGATCCATGTACACTTCC
AGTTCTCTAATAGTTCAG Coding sequence (CDS) from alignment at scaffold_247:328651..330068 >TCONS_00054987 ID=TCONS_00054987|Name=TCONS_00054987|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_247:328651..330068 (Clytia hemisphaerica)
ATGGTATGCTATATAAATGGTGCTAACGGTCGAAGTTTTCACCACACAAC
AAACACAACCAACTGCTACAACAGCTATCATCATCAACTGAGCCTCAAAA
TGAACAAAGCTCCATCGACGCTTCCAAAGATTAACAAACCAACAACAGAG
AAAATGAGGACGCAAACGATCACTGACTTACGAACAAACAAGCAACACAA
ATCAACAACCCTTCCGTCCCTGCAGAAGAAACCGACCTCATATTTGCAAC
AATACACTCGCTTACGTTCAAGAAGTGAAATCCTTTCCTCCTCGTCAATC
GGTCATCAcaaaaaactttcttccaaCAAATTGAACCGTCGTAGTTGGAG
TACCATCTCTGAAGAATCAGCCTGTTGTACTAAACAAAGACTATCCCTTA
AAGTTCCATCAAGCCCTCAATTTCGTCAGGTGCTTCAAGAACTTGCTCAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054987-exon-scaffold_247-1491911889:328651..330068 | TCONS_00054987-exon-scaffold_247-1491911889:328651..330068 | Clytia hemisphaerica | exon |
| TCONS_00054987-exon-scaffold_247-1510915933:328651..330068 | TCONS_00054987-exon-scaffold_247-1510915933:328651..330068 | Clytia hemisphaerica | exon |
| TCONS_00054987-exon-scaffold_247-1575043694:328651..330068 | TCONS_00054987-exon-scaffold_247-1575043694:328651..330068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:328651..330068 . |
Blast
The following BLAST results are available for this feature:
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