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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054981 ID=TCONS_00054981|Name=TCONS_00054981|organism=Clytia hemisphaerica|type=transcript|length=3666bpRun BLAST on NCBI protein sequence of TCONS_00054981-protein >TCONS_00054981-protein ID=TCONS_00054981-protein|Name=TCONS_00054981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1052bp MVFKEKGIPVGNTFLESLTEKFDRSVSNFVLGNAESLRDYPIVYCSDGFCRun BLAST on NCBI transcript from alignment at scaffold_247:354988..366077- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054981 ID=TCONS_00054981|Name=TCONS_00054981|organism=Clytia hemisphaerica|type=transcript|length=11090bp|location=Sequence derived from alignment at scaffold_247:354988..366077- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_247:354988..366077- >TCONS_00054981 ID=TCONS_00054981|Name=TCONS_00054981|organism=Clytia hemisphaerica|type=CDS|length=34749bp|location=Sequence derived from alignment at scaffold_247:354988..366077- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054981 vs. Swiss-Prot (Human)
Match: KCNH4 (Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1) HSP 1 Score: 483.026 bits (1242), Expect = 1.682e-150 Identity = 269/683 (39.39%), Postives = 420/683 (61.49%), Query Frame = 2
Query: 443 NTFLESLTEKFDRSVSNFVLGNAESLRDYPIVYCSDGFCELTGYNRYEVMGNSCHCDFLYSLQTDYSTVDRIKDALRQEKELTAEIDLAKKDGSHFRCVLDTVPIRNESGDVVLFLVSHKEVQHKPHQSIKS---------EVSLKPTPPSGVT----KTRKFSRDVLF----HLQKRYQGNSQSPTSQVGNPESQLIPEYKLENTVLPSLMLLHFGXXXXXXXXXXXXXXXXXXXXXPFNVAFKEHHNL----KPFFIADFCLEFIFITDIILNFRTTYINAKTGRLVTNPKQIAFNYLKHWFVLDMIAVLPFDVIYFCHNDWAYIVAVLKLTRLLRLFRIGRRVSRSIEYTGTLLVLMMFSFTLLSHWLACIWYVIGFEELHAGQT----TGWLMKLGDQVQKPYRNQTRGGPSYSEEYISALYFIFTSLTTVGFGNISPNTVAEKVFSVIVLILGAIVQSAIFGNMTAIIQKLYASRARFHAKASQIKQFVQHHQIDGDLQKRIESWFVSYWSVSNGVNTEEMLESFPSELQADICLHLYRRFLTLPCFSHASRGCLRSISSKVRKANFSPGELIIKEKDAINTLFFMERGTVEIVQREFIVAILGSGDVFGEDICKSSQSNH---------RSNGDVKALMHCEVLFLSRDSMRDVVRFYSDFGETFSRLL--QLSFDL 2383
NTFL+++ +FD + SNF+L NA+ R +PIVYCSDGFCELTGY R EVM +C C FLY +T + R+ AL +E AEI +KDGS F C+LD +PI+NE G+VVLFL S K++ + E SL G T R+ SR VL H +R QG ++ + V P+ +PEYK+ + +LLH+ + IWD +ILL Y+++ +P+NV F + + ++D +E +FI DIILNFRTTY++ ++G++++ P+ I +YL WF +D+IA LPFD++Y + +V +LK RLLRL R+ +++ R + + +L L+M F LL+HW+ACIWYVIG E+ A GWL +LG +++ PY N + GGPS YI+ALYF +SLT+VGFGN+ NT AEK+FS+ +++GA++ + +FGN+TAIIQ++Y+ R+ +H++ +K F++ H++ L++R+ +F + W+V++G++ E+L FP EL+ADI +HL R L LP F ASRGCLR++S ++ + +PGE +++ DA+ +++ G++E+++ ++AILG GD+ G DI + Q +++ DVKAL +C + LS + +V+R Y ++G F L L+F+L
Sbjct: 12 NTFLDTIATRFDGTHSNFLLANAQGTRGFPIVYCSDGFCELTGYGRTEVMQKTCSCRFLYGPETSEPALQRLHKALEGHQEHRAEICFYRKDGSAFWCLLDMMPIKNEMGEVVLFLFSFKDITQSGSPGLGPQGGRGDSNHENSLGR---RGATWKFRSARRRSRTVLHRLTGHFGRRGQGGMKA-NNNVFEPKPS-VPEYKVASVGGSRCLLLHYSVSKAIWDGLILLATFYVAVTVPYNVCFSGDDDTPITSRHTLVSDIAVEMLFILDIILNFRTTYVS-QSGQVISAPRSIGLHYLATWFFIDLIAALPFDLLYIFNITVTSLVHLLKTVRLLRLLRLLQKLERYSQCSAVVLTLLMSVFALLAHWMACIWYVIGRREMEANDPLLWDIGWLHELGKRLEVPYVNGSVGGPSRRSAYIAALYFTLSSLTSVGFGNVCANTDAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREILQLPLFGAASRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSLEVLRDNMVLAILGKGDLIGADIPEPGQEPGLGADPNFVLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYGAAFRAGLPRDLTFNL 688 The following BLAST results are available for this feature:
BLAST of TCONS_00054981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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