|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054980 ID=TCONS_00054980|Name=TCONS_00054980|organism=Clytia hemisphaerica|type=transcript|length=3118bpRun BLAST on NCBI transcript from alignment at scaffold_247:354988..360738- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054980 ID=TCONS_00054980|Name=TCONS_00054980|organism=Clytia hemisphaerica|type=transcript|length=5751bp|location=Sequence derived from alignment at scaffold_247:354988..360738- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054980 vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1) HSP 1 Score: 410.223 bits (1053), Expect = 5.286e-124 Identity = 205/510 (40.20%), Postives = 335/510 (65.69%), Query Frame = 3
Query: 381 VSDHVVRSISVGNPESQLIPEYKLENTVLPSLMLLHFGXXXXXXXXXXXXXXXXXXXXXPFNVAF--KE----------HHNLKPFFIADFCLEFIFITDIILNFRTTYINAKTGRLVTNPKQIAFNYLKHWFVLDMIAVLPFDVIYFCHNDWAYIVAVLKLTRLLRLFRIGRRVSRSIEYTGTLLVLMMFSFTLLSHWLACIWYVIG-FEELHAGQTTGWLMKLGDQVQKPYRNQTRGGPSYSEEYISALYFIFTSLTTVGFGNISPNTVAEKVFSVIVLILGAIVQSAIFGNMTAIIQKLYASRARFHAKASQIKQFVQHHQIDGDLQKRIESWFVSYWSVSNGVNTEEMLESFPSELQADICLHLYRRFLT-LPCFSHASRGCLRSISSKVRKANFSPGELIIKEKDAINTLFFMERGTVEIVQREFIVAILGSGDVFGEDICKSSQSNHRSNGDVKALMHCEVLFLSRDSMRDVVRFYSDFGETFSRLLQLSFDLSHVKMQKPSIG 1868
V++ V + +S+G + ++PEYKL+ + +LH+ + +WDW+ILLLV Y ++ P++ AF KE + +P + D ++ +FI DI++NFRTTY+NA +V++P +IA +Y K WF++DM+A +PFD++ F ++ +LK RLLRL R+ R++ R EY +L L+M +F L++HWLACIWY IG E+ H GWL LGDQ+ KPY + GGPS ++Y++ALYF F+SLT+VGFGN+SPNT +EK+FS+ V+++G+++ ++IFGN++AIIQ+LY+ AR+H + ++++F++ HQI L++R+E +F WS +NG++ +L+ FP LQADICLHL R L F A++GCLR+++ K + + PG+ ++ D + L+F+ RG++EI++ + +VAILG D+FGE + ++ +SNGDV+AL +C++ + RD + +V+ Y +F + F L+++F+L M S G
Sbjct: 370 VTEKVTQVLSLG---ADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANE-EVVSHPGRIAVHYFKGWFLIDMVAAIPFDLLIFGSGS-EELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPG-KSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMIPGSPG 873 The following BLAST results are available for this feature:
BLAST of TCONS_00054980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.