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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054955 ID=TCONS_00054955|Name=TCONS_00054955|organism=Clytia hemisphaerica|type=transcript|length=1040bp
ttagaAACGAAAGTGAAAGATTCCAAGATGGTGGAATCCTCCGCGACTGT
TCTCGACCTTGACTCAGCGCCAAAAATGACGTAGATAAATCAACAGCTTT
TTGTCCAATCAGCGTCTGTTCCTCAACTTGAAAGGGAACATAAAATAACA
ACAGTCACTCTTTGCTTTTTTTGGTTgttggttttgttttcaaatatgGA
TCTCTTCGCCGCGTTTTTCATGTTGGTTTGGGTGATGGAAGCAACCTTTG
GTCGGCCGTCTACTGAAGATATTCCCATGTATAACATTGGAGGGAAAAAG
TATACCATTGCCACCATTGACCAATTTTCTAATGATTTCAAAGGGAAATG
TAAATTACACAAAGCCCACATGGAGTTTGGTGTTAATAGAGTTGTGGCGG
ACTTTTGTGGCGGAGGATGTGAGGGCGTGGATGCCGATCGCTGCATCGCA
TGTCAACCAACCCCTAATGGGAAGAAATCGAAAAATGTTACAATTATCGA
TAAGAAAGGAATTTCCAAACAAAAGACAATCCAGGTGATCACGGCTTGTC
ATTGCGCAAAAGTGAAAGACTGTGTTGCTAGCTAAAAAAACCCTATTCAA
AGACTTGAAATCTTAATGATATGGGGACGCCTTGGAGAATATTCCAACTC
CATGTATTAAACAGCGAAAGTTTATTGGAGCTTTGTTGGAGGTTTTAAGT
ATGATGGAATGCCTCGCTTGATAACCCGCCCGATGACCCGCCTACGTTTG
GGCATAACAAGAATTGTTACTAGCAATGCCCTTTCAATAGTGCTTTCAAT
GATGAATGTGAAagaactttttctttgtaacaTATGTATTTCTTTTGgat
ttgtttttttaaacagTGTACAGATATTTGATAATTTcgtttttaagtaa
aaataatttgtaaaaagagaaaaattcgtTGGTTTGATACATCGGTGCGG
ATGTTTTATGTGTAGTGACATGTactttccaaaaaataaaatgtaaattc
GCGACCACAACAATAGACTACTGAAGTTAGTAAAAAGGGC Run BLAST on NCBI protein sequence of TCONS_00054955-protein >TCONS_00054955-protein ID=TCONS_00054955-protein|Name=TCONS_00054955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MDLFAAFFMLVWVMEATFGRPSTEDIPMYNIGGKKYTIATIDQFSNDFKG
KCKLHKAHMEFGVNRVVADFCGGGCEGVDADRCIACQPTPNGKKSKNVTI
IDKKGISKQKTIQVITACHCAKVKDCVAS Run BLAST on NCBI transcript from alignment at scaffold_247:349147..353556+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054955 ID=TCONS_00054955|Name=TCONS_00054955|organism=Clytia hemisphaerica|type=transcript|length=4410bp|location=Sequence derived from alignment at scaffold_247:349147..353556+ (Clytia hemisphaerica)
ttagaAACGAAAGTGAAAGATTCCAAGATGGTGGAATCCTCCGCGACTGT
TCTCGACCTTGACTCAGCGCCAAAAATGACGTAGATAAATCAACAGCTTT
TTGTCCAATCAGCGTCTGTTCCTCAACTTGAAAGGTGAGGCCCTTTTTAT
ATTCTTACGACCCTATCTCACAATGATACCAGCAAAATCAAGGCTTTTGA
AATGATCAATattttatctggcacccagatggtcaaattttcatcccaca
cgctaaagctctgaaggtcgggaagaTTTTCAatatctggaaggtttaca
ttacggaattttgcgagaccgcgtTAAGAAATTTGCAGCGGGatgtctgg
taacccagccctcgatTTCGGGGATTGgtgggtccaaccgaaatatttat
aGGTTTATGCCTaagggctgttgaacccgactggggatgcggcacatcaa
aggccgactatcattcctctccgatgggaaattggcccgctcctttaggg
CTTTagtgtgggcggccgccaatccgccatcggaatatcagataaatcaA
TATTTTGCTTACTATTGCCCGTTGCGCGTGAACGAGGGGATAACCTTAAC
AAAGAGGCTTATCAATCCTGAATCACGAATTCTCGGAAAACTTGTCGACT
TTGTTTTGCGACTGAACATAGCCGCCGAATTCTGCATTATCTTTTTAATA
agaaataccttatcggggaaaaaatgtcgggaaaagtgacgaaaattttg
agcgGGTAACGAattttttacccgatttttttatccccgaccaaaaactt
ttacccaattttttaaaccccaaccaaaattaaaatctaaatttttcaca
cctttattaaccgaaattagtgctttaaacgtcgaattacaagatctttt
ttcgagctagtgaaggaaaccatttcatttggacaatttagttggatgaa
agtgactaaatagtaattttggtcgggggaaagtgacgaaaatgaaattt
ttccccgacgaaaaaaaaccccgactaaataaaactccgacattttttcc
ccggtAAGGTAGTCTGGTACCGGGCTATTTCGTGTTCTATGGGGCACTTT
TAACATATTGGTATTACTTTGAAAATGGAGATTATCGATAGGTTGAGTTC
AGGTCCTTTATAATCTGTTAGTCAAACCGGAAATAGNATTATCAATAGGT
TGAGTTCAGGTCCTTTATAATCTGTTAGTCAAACCGgaaatagatttatt
tttgcgATTCTTTATTCACTCCTCTTTTTCTCACCACTCACTCcatcaaa
aaataacaaaacaaaatagaCGGCCActttcaacagcaaaacaaacAGAG
ATGGTAATTGGACCTGCTTTAGGCCTTCTTCTTCTGGTCCCAACACACAT
GACTCCCTCCCCCCGTTGTCTCGCCTCATTCTTCCTTGGTCCAAAGACGA
TATCTTTGGCATTGGAGTCTTGCAAAGCCACCTGTTAAAATATGGTTCTT
TTGAAACATCTTGTTTCATCAATATGTCCAATTTTTTTGACACAATGACT
GGATGACAtttgaaagtaaacaaaaatttgtgTTTATGTTGTCATAAAAA
GCCCACCCGTTTCTCTCACTTTCTTGAAGACGAGTTCAACACTATAGAAC
AAATTGAAGGTTGTTTAAAAGTAGAAGCTTGTGGTGTGGAGTGAGCGAGT
GCATGAGCGAGACACGTTGCAAAGTCTTTGGTTTCAAGCAGCAACAACta
ttttttcgatgacgtctGTTCGTTGGAGTTCCAAGTGATTCTTCATCCCT
TAATCTGCtgttgacgtcagcagttttttatttgtaaaggATTTTCGAGG
GATCTATGAAATATTTTCTATGCTCCTCtctcaagtttttcttttccgCT
TATAGACATAAAGAGAGCTTTTTTGCACATCTTGGTCTTGTCCATGtcat
tttgttagttttttttcagTTGGTTTTTGCTAAATCAAGTTCGAACGGGT
CAGTACAGCCGACGTTCTCTGATTCGAGTTTTAAGGGCGGGAAttcgatt
ttcatcgaataaagaAGCGTATGAAAAAGTTAAGAGGGTTTCACGTTGAA
GGTGACTTCTAACATTATCGTAAattggagcgtatcgaatatagaacgaa
cgtcgaattagagagcgtcaactgtattttacGAAGGCTCTGTGGGTGGA
GGACGAAagttagttcgaattatagaaataatTGTTACTATTGATTATAA
TTATTGAATATAAGTTTGGTCTCCAAAGGACCAAGAATTTTCACCGATTT
AGAGAAAGAttagaattatagaaagattcgaatataACAATTTCGAATTA
GAGACAGTTGACTATATTAATATTTAGATCCTTTCGGTAAGAATAGGTGA
GGTTTATCACCATTTCTTTTATCAGTGAGCCGTTAAGGATTTATATCTAC
TGAGTAAGGGTGAAATGAATTTTGGATAGAGATGTCTTGTTTGTGACTGA
TGGAGATTGAGTCCTCTTTTTCTACCAATCGGAATTCTTGTATGGATGGT
GGTTTAGTCTCCAAACTATTTATTGCGTTTCTCAAATTTCATGACAATAC
TCATACTGTCGACTATTTTTGAGTGGTGTCCTACTTAATTTGCTGAGAAT
ATTTCTTCCAGAGAAATTAGCTCACTCGTTCCTTTGTAGATGTTTAACCC
TTTGCATGAAAGataagaaatttgtcaaaaggaggcattttttcatttca
attttgtaTTTCCTCTCATTGGCTAGACTTGACTAACACATAAATTTTTC
ACACCTTGAATGAAATTAGCCAATCAGAAAGCATTGCTGTGAAATATTAA
CCAATCAGTGACCGCACTCAGTAAAATATTTACGATGCTGGTTTCCTTTC
TTTGAAGCCTCAAGGAGGAGAAGAATTTGAGTTTATGTTGCGGTGAGTGG
CTTTACGTCAAATGCAGCTTAAAGTtagaaaaaagaaagtaaacaaaTAG
TAGAAGAGAAGGGAGAAATGAAGTCATTCCCTATTTTGGAGTTTTGCTTC
ATTTATATCGCCTGAAACAACGGAGTCAGACGTTAGAtagtttcaatttt
tctatCTTTGTTGGAAAGTTTCTCGGCTACTCCATAGATCCGTCGAACTT
TAGAAAAAACCTGCTCAGCTTTCCTAATGATTTTGAAAGCGTTTATTGAT
TGTCGATTATGTGAGTATTTATACTAGAATTTCTCCAATgaagctgattg
gttgaaatagAAGGTGACATGGGATGTCAGAGAGTTCGAAAGATTAGTTC
TAAATAGTTTCTTAATGAGGCTTTCTTCTACTATTTGTCAAAGACTGACA
GTCCATTGACAAGCCAAAAGCACCAAATTATGCAATGTGTGAGAAAGACC
CTTAAAAAAACTCTCTTCGAGGGAGGGATGTTCTGAAGCACTCTTAACAC
TTCATCAAATTTGCGATctacaaaaaaatcattgtatTTACTTCAACTTT
TTAGGGAACATAAAATAACAACAGTCACTCTTTGCTTTTTTTGGTTgttg
gttttgttttcaaatatgGATCTCTTCGCCGCGTTTTTCATGTTGGTTTG
GGTGATGGAAGCAACCTTTGGTCGGCCGTCTACTGAAGATATTCCCATGT
ATAACATTGGAGGGAAAAAGTATACCATTGCCACCATTGACCAATTTTCT
AATGATTTCAAAGGGAAATGTAAATTACACAAAGCCCACATGGAGTTTGG
TGTTAATAGAGTTGTGGCGGACTTTTGTGGCGGAGGATGTGAGGGCGTGG
ATGCCGATCGCTGCATCGCATGTCAACCAACCCCTAATGGGAAGAAATCG
AAAAATGTTACAATTATCGATAAGAAAGGAATTTCCAAACAAAAGACAAT
CCAGGTGATCACGGCTTGTCATTGCGCAAAAGTGAAAGACTGTGTTGCTA
GCTAAAAAAACCCTATTCAAAGACTTGAAATCTTAATGATATGGGGACGC
CTTGGAGAATATTCCAACTCCATGTATTAAACAGCGAAAGTTTATTGGAG
CTTTGTTGGAGGTTTTAAGTATGATGGAATGCCTCGCTTGATAACCCGCC
CGATGACCCGCCTACGTTTGGGCATAACAAGAATTGTTACTAGCAATGCC
CTTTCAATAGTGCTTTCAATGATGAATGTGAAagaactttttctttgtaa
caTATGTATTTCTTTTGgatttgtttttttaaacagTGTACAGATATTTG
ATAATTTcgtttttaagtaaaaataatttgtaaaaagagaaaaattcgtT
GGTTTGATACATCGGTGCGGATGTTTTATGTGTAGTGACATGTactttcc
aaaaaataaaatgtaaattcGCGACCACAACAATAGACTACTGAAGTTAG
TAAAAAGGGC Coding sequence (CDS) from alignment at scaffold_247:349147..353556+ >TCONS_00054955 ID=TCONS_00054955|Name=TCONS_00054955|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_247:349147..353556+ (Clytia hemisphaerica)
atgGATCTCTTCGCCGCGTTTTTCATGTTGGTTTGGGTGATGGAAGCAAC
CTTTGGTCGGCCGTCTACTGAAGATATTCCCATGTATAACATTGGAGGGA
AAAAGTATACCATTGCCACCATTGACCAATTTTCTAATGATTTCAAAGGG
AAATGTAAATTACACAAAGCCCACATGGAGTTTGGTGTTAATAGAGTTGT
GGCGGACTTTTGTGGCGGAGGATGTGAGGGCGTGGATGCCGATCGCTGCA
TCGCATGTCAACCAACCCCTAATGGGAAGAAATCGAAAAATGTTACAATT
ATCGATAAGAAAGGAATTTCCAAACAAAAGACAATCCAGGTGATCACGGC
TTGTCATTGCGCAAAAGTGAAAGACTGTGTTGCTAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054955-exon-scaffold_247-1491911889:349147..349280 | TCONS_00054955-exon-scaffold_247-1491911889:349147..349280 | Clytia hemisphaerica | exon |
| TCONS_00054955-exon-scaffold_247-1510915933:349147..349280 | TCONS_00054955-exon-scaffold_247-1510915933:349147..349280 | Clytia hemisphaerica | exon |
| TCONS_00054955-exon-scaffold_247-1575043694:349147..349280 | TCONS_00054955-exon-scaffold_247-1575043694:349147..349280 | Clytia hemisphaerica | exon |
| TCONS_00054955-exon-scaffold_247-1491911889:352651..353556 | TCONS_00054955-exon-scaffold_247-1491911889:352651..353556 | Clytia hemisphaerica | exon |
| TCONS_00054955-exon-scaffold_247-1510915933:352651..353556 | TCONS_00054955-exon-scaffold_247-1510915933:352651..353556 | Clytia hemisphaerica | exon |
| TCONS_00054955-exon-scaffold_247-1575043694:352651..353556 | TCONS_00054955-exon-scaffold_247-1575043694:352651..353556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:349147..353556 + |
Blast
The following BLAST results are available for this feature:
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