TCONS_00054953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054953
Unique NameTCONS_00054953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054953 ID=TCONS_00054953|Name=TCONS_00054953|organism=Clytia hemisphaerica|type=transcript|length=1978bp
gaaacgctttctcgtgtctccaccccatttttcattcaataacatttgtg
cttctctcacttttgtcccagggacaaaatcagcgtgtcttttgggtatt
tccctcactttttgttccataaaacaaaaaaagaaaccatgggacacgca
ctttttttcttgtgttggtgggatggagcatgttgcgttgtaccaacgca
aaaaaaacttctcgtgtccccaagtcTTTAAGGTAAAAACACGATTCTTT
TACACTTGGGTAAGAATAACCTTCTCGGATTTTTGCATGACCTTGCTTTA
GGGCGTGTCTTGatactgtttctttattttagaGCTTTTGTACTGTTTGA
TTAACTGGACATAAATGTGTGGTAATTAAATCAAAGGCTTTTTACAAATT
ATTTATAATTACGGAAATACTAATTTGCCAATGTAACGCGATTTAATCTA
AGCGAATAATTCCTGCGATGACTTTACAGTATGTCCAATGATGTAAATAT
CACTACACCCGTTTCCATCCATTTTTTTCGTGCCGATTTTTTGTCGCTGA
TCGCCGAGAAAAGTCTGAGAAAAGTTTAACCGAAGTTGTTTAATTCATTG
CATACACTCATCATCACACATGCTTGCTTCCACCCTCCCTCATCGTCAGC
ACAAAAAGCGCCTGACGTCGAAACAAGACAGAGTCGGAATTTCCCAtaag
aagaataaaaaagttcGAATTTCAAGCCAACAACGACAGGagCAACTAAA
TCAAGATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGAGT
TCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCATC
CACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATCAA
CCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTGCC
GGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGaattcAACGTGAATTGAC
AGACATTACTCTCGACCCTCCGCCTAATTGCAGTGCTGGACCAAAAGGCG
ACAACTTGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCGTC
TATCAAGGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTATCC
CTTTAAACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAACA
TCAACTCGCAGGGTCAAATATGTTTGGACATCTTGAAAGACAATTGGAGT
CCGGCATTCACCGTCTCCAAAGTACTTCTCTCGGTGACGGCACTTTTGAC
CGATTGTAACCCAGctgATCCATTGGTTGGAAACATCGCACAACAATTTC
TTTCAAACCGTGAAGAGCACGACACGATCGCCCGTGAGTGGACCCGAAGA
TACGCTACCTAAATGCTTCCCAGCAAAATCTGTTTCTCAAATCATGTAAA
TATCTCTGTTAAACAGAAAGTGATGGAGTCGAGTTGGAAAGGGAGAGAAG
CTTAACTGCTGTGAAGTGATGTTATCCAATAAGAGTTGTTTGAACTGACG
AGGATGTGTTCTGGAAGGTTCAGCTTAGATGACGATAATGATGTTGTTTT
CTCTCGACTCTGGCGGTAAATGAATTGACATCAATGTAAGTGTTAATGAC
AGTCACCAAGCTCCTACAAAGCaaagattgaaaaagaattgaGAGTATCA
GTCGAAATATGAACAAACACTCATTAAAAACTTGATCGCAGTTTATAGAA
GTATGCATGCACGCTTTTCGCTTTCTACTCGGGGAAgatatgtttcaatt
ttcatgccTTCCGGCTGAGTGGAATACCATCACTTGTACCATCACAGTTG
Aagtaatttcaagaattttaatcctaattgcccccgcaaggagcgcagcg
actgaggaggcattcatagcttcacgcaatatattgaactggaatctcga
ttttttgcgaattgtttttgtttttgNN
Run BLAST on NCBI

protein sequence of TCONS_00054953-protein

>TCONS_00054953-protein ID=TCONS_00054953-protein|Name=TCONS_00054953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MAASRNTAAANTTESSVDPDSTAETSRGISSSTLGSSTSQDNSSMARSTS
TSAPFKRSKPPAKTAGKKKVSTAVKRIQRELTDITLDPPPNCSAGPKGDN
LYDWVGTILGPQGTVYQGGVFFLEITFPSDYPFKPPKVIFRTRIYHCNIN
SQGQICLDILKDNWSPAFTVSKVLLSVTALLTDCNPADPLVGNIAQQFLS
NREEHDTIAREWTRRYAT
Run BLAST on NCBI

transcript from alignment at scaffold_247:330200..341302+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054953 ID=TCONS_00054953|Name=TCONS_00054953|organism=Clytia hemisphaerica|type=transcript|length=11103bp|location=Sequence derived from alignment at scaffold_247:330200..341302+ (Clytia hemisphaerica)
gaaacgctttctcgtgtctccaccccatttttcattcaataacatttgtg
cttctctcacttttgtcccagggacaaaatcagcgtgtcttttgggtatt
tccctcactttttgttccataaaacaaaaaaagaaaccatgggacacgca
ctttttttcttgtgttggtgggatggagcatgttgcgttgtaccaacgca
aaaaaaacttctcgtgtccccaagtcTTTAAGGTAAAAACACGATTCTTT
TACACTTGGGTAAGAATAACCTTCTCGGATTTTTGCATGACCTTGCTTTA
GGGCGTGTCTTGatactgtttctttattttagaGCTTTTGTACTGTTTGA
TTAACTGGACATAAATGTGTGGTAATTAAATCAAAGGCTTTTTACAAATT
ATTTATAATTACGGAAATACTAATTTGCCAATGTAACGCGATTTAATCTA
AGCGAATAATTCCTGCGATGACTTTACAGTATGTCCAATGATGTAAATAT
CACTACACCCGTTTCCATCCATTTTTTTCGTGCCGATTTTTTGTCGCTGA
TCGCCGAGAAAAGTCTGAGAAAAGTTTAACCGAAGGTAATGTTTATTTAG
AAGCTTGTTAAATCTATACGTAAGCATGTTTGTAATTTAATATTGGATTT
ACGAGAGATAGTGTTTTATTTCACAATACGATCCTTCGTGGCCATGTTTG
TGATTTGTATTGGCAGCTTCTTAAAAACTGTCCTCTTAACTCGGCGTACT
TTTTCACCAAGAAACTGAGTGAATTATTCTTATAACGTTGATGTTATTAT
TTCCCTCTGTTTTCGTGTAAAGGATAATGGTATATGTATCATCAGGCTTT
GTTGTCATAGCAACATTAAATTGATATCAGATGATTTGTTAATAACCTTA
TAATTTGTCTTATTTGTTCTAGTTGTTTAATTCATTGCATACACTCATCA
TCACACATGCTTGCTTCCACCCTCCCTCATCGTCAGCACAAAAAGCGCCT
GACGTCGAAACAAGACAGAGTCGGAATTTCCCAtaagaagaataaaaaag
ttcGAATTTCAAGCCAACAACGACAGGGTAAGCAAGCTTTCAATTTTCTT
CGCTTTGTAGTTTAACATGCTTGAATGACTAAAgttgagagagagagagg
acACTGAAAGATTTAACTAACATTACCCCGTAACagttatcgtattatca
taacACCTTTATTACTGTATTATACGTACCACTTGTATGACTATTTACCA
TAATCATTTTAACGTCTAGTGCCGTATActcgtttttataagaaactcaT
TTAATCATTCTAAATTNTTAActtaagaataccgtaagaatatttttgga
cgattttcgccaaaaagttaagaatacccATGATGAAATgcaaaaacacc
attcttatagaaaaaagaaGCGTGTAACCAGTACAGTGTACCATCTTCTT
AGACTTTTCACATCGAGGTCACAGAACGTGTTTCATCTTTCAATAAACAA
GNAATGATAAGAATAAAACATAGATCTTGGCCATTtcgtatttgagaaaa
aaatgaacagaGAGACAGAATTTACACTCTAACAATACTATGGCTGTTGT
CTTAAACTTTCTCTCCTGTCAGAAAATCCACacccttttcaataaaataa
cgAGCACTTTATGAAAAGGGTCTTAAAAGCATTCTAacctataaaaaaaa
ttagtgcATATATTACTAAATAATATGCTATTATAAGATCCTAATCCAGT
AATACAAATTTTTGACACCTCTTtttcagtgacccggtgaggATTATTTG
CCAGTGATGATAGATAAAATAGGAATTTACATGCTGGTTGGGACACTATA
CAATCCTTTTTTggatggctggggatttcaaagttttattaTTGTGTATT
TCCCGGTGGGAAGGGGAGGTTACTGTAGTTTTCCAATAGGAATGGGGTTT
CAGGGCACCTTTCCATCGGAAACGGTTTTTGGTCATTTGGGCGGGGTTCC
TTTCGGTTTTGAGACAGTGGATATATTTTCAACCCTAAGAATTAAGCAAA
TATCATTATAAGGAAAAGAggatttctaataaaaaaggaCGGTGACTAAA
AAGTCATCTCACATTCTGATCACTCTAACATTTCAGGCGCTCAAATCTCA
TTCTGGTGGTATAGAGCTGTTGTTTATTTAGAATCGACTTTATTAGACTA
TTAAAATTGTAtccaaaaacctttttttatttaatcatATAAGTTGGAGT
CGTTGGACAACcagaaaatcgataaaaatacCTTGGAGggtaatacaatt
tttttataagagcatccaaaatttttgaagtctacggatgttcttaactt
ttttagttttaagtctaaaaatgttcttaacatgttcttattttgaccat
tttttaagtatttttgaccattttcctaagaaaaagggtgtttttgagtc
cacaaagccttaaaatgttcttaacttgttcttaacattttagccattGA
AGCCTATGTTCTTATATAGTTTGTTCTTATGCTTCGATGGCCAAAATGTT
AAGAACAAGTTAAGAACGTTTTAAGGTCTAACGTCTTTACAGACTCTTTC
TTAAGAAAATGGATAAAAATGCTCACGAAATGGTGAAAATAAGAACATGT
TAAGAATATTTTTAGGCTTAAAGCTCAAAAAGTTAAGAACATCCTAAGGC
TTCAAAAAGTTTGGATGTTCTTAACGTGTACACGCTTTTTTTTTATAAGA
ATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTAAGAAT
ATAGTAAGAATATCACCATCATAGAATTTAGCCACTGAACCTAAGAATGC
CATTTTAAATGCATTTTAACCTGTAGATTGCCAATTTCGATCTTAACTTA
AGAATACCGTAAGAATATTTTTGGACGATTTTCGCCCATGATGAAATGCA
AAAACACCATTCTTATAAAAAAAAAAGCGTGTAACCAGTACAGTGTACCA
TCTTCTTAGACTTTTCACATCGAGGTCACAAAACGTGTTTCATCTTTCAA
TAAACAACCTTCAATTTTTCACGAGCTTCTGATTTACGATATGGTTGCTG
TTATTTCACATTTTTTTAATCTCGACAACAATAAGGTTTATTCAATCGTT
CTTTTATGACGAAACAAGATAGCAGACCTCTATGTTTTAAGAGCAGACCG
AAAGAAAGAGGGAGACCTCTCAGAAATGAGGAAGGCAGACAAGCTAGGCA
GGAGGAGCTCTCACTCTCAGTTACTCTAGTTAAGTAGGAAACAGGGGTGG
ATACGACAGGCTCCTTCTaagagatttttctttttctttagagCAACTAA
ATCAAGATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGAG
TTCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCAT
CCACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATCA
ACCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTGC
CGGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGGTAAGGGGTTTCCCCCT
ACTGACCCTACATTTTCTTTATGGGATGTTTTAAGTTGGCTTCTTTCTCT
ACTTGGAATATTATAACTAAGGGTTTGGCATAGGAGAGAAATCTTTTTGG
GTTGGGGTCGCTTAAATGAAAATAGATTATTGgaattaaagaaagttgag
gtattatataaatttcataaactaattatttcatctattttcAGTTCGTA
ACGTTATAGTTTTCATTAAGTGAAATTTAGTGCTTTAGACTTTGTTACGA
TTTTCAAAATTGCGATTCTTTTAAAAGAGTATATTGTATTTGAATACTTT
ACACCagcacccctgtatcagtgacctGTTGGATTTCTAAGTCTTCTTTT
AATTGGACAGAATTTANCAATCGTTCTTTTATGACGAAACAAGATAGCAG
ACCTCTATGTTTTAAGAGCAGACCGAAAGAAAGAGGGAGACCTCTCAGAA
ATGAGGAAGGCAGACAAGCTAGGCAGGAGGAGCTCTCACTCTCAGTTACT
CTAGTTAAGTAGGAAACAGGGGTGGATACGACAGGCTCCTTCTaagagat
ttttctttttctttagagCAACTAAATCAAGATGGCAGCCAGTAGGAATA
CAGCAGCAGCCAACACGACAGAGAGTTCAGTTGACCCTGATTCCACTGCA
GAAACGTCTCGAGGTATCTCTTCATCCACCCTGGGGTCATCTACTTCACA
AGACAACTCTTCCATGGCAAGATCAACCTCCACATCTGCACCCTTCAAAC
GCTCGAAACCTCCAGCCAAAACTGCCGGCAAGAAGAAAGTTTCAACTGCT
GTTAAAAGGTAAGGGGTTTCCCCCTACTGACCCTACATTTTCTTTATGGG
ATGTTTTAAGTTGGCTTCTTTCTCTACTTGGAATATTATAACTAAGGGTT
TGGCATAGGAGAGAAATCTTTTTGGGTTGGGGTCGCTTAAATGAAAATAG
ATTATTGgaattaaagaaagttgaggtattatataaatttcataaactaa
ttatttcatctattttcAGTTCGTAACGTTATAGTTTTCATTAAGTGAAA
TTTAGTGCTTTAGACTTTGTTACGATTTTCAAAATTGCGATTCTTTTAAA
AGAGTATATTGTATTTGAATACTTTACACCagcacccctgtatcagtgac
ctGTTGAATTTCTAAGTCTTCTTTTAATTGGACAGAATTTAAGATTTTCT
CGTTCACAGATAAAAACCCAGTGAGTAATTCATAAATTTTCTTGTAGCTG
CTCTTTTGCGAACCAAAaaagcattttcaaagtttaagaAAATTTCAGGG
GATTCGCTTCTCAAGCTAAATGATTTTTAGCCGATTTTTCCATTTGTGGG
GGCCCCACCGGTTCTCTGTGATACAGGGATGCATTACAGTGCTAGGGAAA
TAAGTTTTGTTCAAAGGTAACCTTTTTAAAGGAAGGAGTCCTTGATATAA
AACTGtcaagataaaaatatttagttttacttctttgtttctattttttc
ttttttatagaaaattattCCCCCTTTTTTCACTTCAACATGAATGAGAA
ACGCCCTTCCTCTCTTCAACCCCCCTCCCTAGAGcagagaaactttttct
ttgaaaatctcTAAAATTGAAAGCAAGATTTCCTGGTAAGAAATTTTCAG
TACATGAGGCGGACAAAGACAATATCTGCCATTTTGTTCTCAGACGAAAA
AATGTCGTAAACCCGGGGCAATTAGATATTGAGATTATTATTTGTTTTCG
AAACCCGAGGTTAGTTTTGCAGCTGCGAATCATTTTTCCCTTCTAGAAAT
TTCTCTTCTAACTTTCGTTGCATTAGCTTTTTGCATTTAATCACACAAAA
TCATTAGACAACTTGCCAGGTGAAactaatttttgataaatttcttcACC
TTTCATCAAAATAAAGTTCATAAAAACATGGCTTTCTAAAAAAAATCCGA
CATTCGACTatcaacactttttttaatgtttttatgtgACGTCATTCATT
TACTTAACAACCGCTGAccgttttttataatttttcacaTTGATATTATA
AGAACTAACCCTTGGATATCTTATAAGCCAGTTGAAGACTTACATATCCA
TTATATAATGTCTTAGTTTTCGGCTGCATTgtcacatacacgttttttat
aaaaaatgaaaaacttttgaggcctttgaatgttcttaatttttaaaacc
taaaaatgttcttaaaatgttcttattttcaccattttgtgagtaatttt
ATCTATTTTCCTGAGAAGttcggtgttttagagtccacaaagttCGAAGC
TTTATAGTTTGttcatataaaattaaaaaaacatgtaagatGTAAGATTC
TTTTAAACTTCCATTACTAGTTATAATGAccttgttttaattttcttgcC
AGATTTCAGATTCTTTCCCTAGCATTGCGAATCTCGTTTTCCTAATGGAA
ATAAAACTATTCCTATGGGAGAAAAGAGCGCTGACcagggggcatagccc
cccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcaccccccccccccccaatatgaaaatgc
ttcctacggcactgctgACTCAATAAAGATAAACTGTTACacgcttttct
ttttttataagaatggtgtaaatccatttcatcatggatattgttaactt
ttttgggaaaatcatcctagaatattcttacaccattcttaagttaggat
cctaattcagactagattaaacatttagtacatacgtctcaagcataaaa
tggcatttttgtgaaaggggtGAGCCTTAGCTACTTgagggtaattgaca
atttataattaattgaaaatgctctaaaaatggcattcttagcttgaatA
GCAAAATTTCTTGCTGGacatattcttagcatattcttaattttttggcc
attttcatcatggacattcttataaagtgtattcttattaaaaaaagcgt
gtagtctgaatcacagactCTTCGCAGACCTCTTTAGAAATACTTGCCAT
AATAAGAAAGTGTTTTCGCTAAAGGATGAACAGAGGCCTAAATAACTGCG
TGCTATTTATTGTGTTAAACCCTAGTGGTTGTGTACCCCTAGAAATGGAA
GCGTCCTACTGGTTGAAAAGTATATCACATGAACTTTCATGGGAAAGTGT
TCATGCGACTTTATCAGCTAAAAGCGACATATGGGCTGTTctagaaaaaa
tccgttcatgggggatggaggatgaattgtccaggggtattgaaaaaata
ccaaagaattgcaatgtccagggggtaaattccaatgtccaggggtaatt
ttttgtgtccacggggttgatttgatgtttgtccaggggtataacccgtg
tccagggggttaaaaatccaaatgtcccggggtaattcatgaaaaaaata
atatatcctccaccccccatgaacggattttttctggaagagcccattgt
tcTACTGGTAATATATGGAaggcgttttgaattttttcctaACACTTTGA
GCCACGAtgttttcaaaaaccttttgttctccaacTTATACCGTTTATGT
ATTTTGATCACCCTCCTACTTATACATTGCCTTGGTCTAATTGGTGAGAA
AGTTTTTAGTTCTTatatttcaatgattttgtGTGTTTAGCTGTGAGTTA
CAGTGTTCTTTTCTTCAGATATTCTCCGCCAACCCCTCCGCCCAAATGCC
ACCCTCTGCATGATTGTCTTCAATGTGATGAATGTAGAGCAAATGTGCTT
TTTCTTAGCTTTGAACAATGTAACTGACTGATTTCGGTATCTGTTTCATG
TTTGTATGCCTACAAAGCCTATTGCCTGAAAAGTTGATTTATACCATTCT
GCATTCATGCATGACCCGCGCCATGATCTCCAAATTAAAAGGGCCAATGT
ACTTGATTTTGGTTTGCGGCAAATGGAGAAATTCCGATTTCGCATCCATA
AGATGCATCCAAATAACCCTATTTGTGGAGAATGAGTTTATTTTCGAACT
CTGTATATCATGTTATTtaaatgcttttctttttttgcaagaaaGTGGTA
GCGGACCTTCGATTAAAAGAAAGGTATGGGACAGGCAATAGTGAGGGCGT
AGTAAAAATAAGTAGCAAGAAGTTTTGTGTTTAATTTGTGGCCAGACACA
AGAACGATGACGTACAATGCGACAACTTCAACTTTATCACGAGCTTCTGA
ATTCGGGCAATGAATAAATCATGAAATGTGCTGTTATGTTATCATTTTTT
ATtaacactcttttttataagaatttactttCAGACCGCTTTATATTATC
CCTTCTGTGTTTGTTACTTTCTATTACATATTGGGCTTCTTTTGTATGTT
TTAAAGTTCCTACAGTTCCAAACTAGCTCAGAAGCCTGGGTGCAAATATC
TTGCACGAACGTCAAACTTTCTCTGGTCATTTTGTAAACCAAATATATTC
TTAGCTCAAAAGTAGAGTATGTCGTTCTGACATCTGAGAGGATTATTTCT
CCTCACAAAAAAACCGCTGACCGGTTCCCAATGAAACCATacataatgaa
atgaaaatcgtCAGATAAAATAATGGATGTCTAATTATTTATGAAAATCA
AGCATACTTAAATACATTAAATAAACAAATTACATTCTGTTCTGGACTTC
CCTAACTTTGTAATGTGTTACCGAACCCTGTTGTCTCCCTGTTGCCAGCA
CTGGAATAGGGGTGGTAAGTGTTCAGGGTCAGGGGGCCTTAGGGTCTTAG
ACTTTGGGGCTGGTCGTATAATGTAGGCAGACACTAATTTATGATAATAT
TTTAGCTAATTAACTTGAATTGCCTGGGATATGAAGCTTAAAGACATTAA
ACACAAAAGAGAGAGTTTAAGACTTTTTTGTTAGAACCAGTATATGTTTG
ACGAGActcagctgttcttattttttaggaCAAAACCGAGGTATTTCCGG
TTTGATATTTTTACTAATTGACTCTTAATTTGCTTAACAACTTTAGGCTA
atgattgttcttaaattgttcttatgaaattattCTTAGAAAAGAAAGAA
TGCATTTTGAAAACCCTGGAATAACtgtatcaaaaattatttcttttttt
tatttcagaattcAACGTGAATTGACAGACATTACTCTCGACCCTCCGCC
TAATTGCAGGTACGTAATCATCATTATCTCCCTATAATTATCTCCCTTGA
CTTCAAACGCATTCCGCATTTAGAAATACTTAATTATTTGCCATATTTTG
GTGGTTTTCTTCTGATACAAACGTTTTTATAACCTGTTTATAACTACACC
CTGGTCTCGCTGAATTTAGTAAAGGTTTGATATATATGATGTTAATTTAC
TGCATATCATGACTTAAACTACTGAAAGTAAAATACGAAAACAcatactt
tttaattttgaaccACGTTTGTTTCAGTGCTGGACCAAAAGGCGACAACT
TGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCGTCTATCAA
GGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTATCCCTTTAA
ACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAACATCAACT
CGCAGGTAAGGACTGTCTTTCACTCTTTCCCTCCCTGTTGAAGGTGGCTG
GAGGGTGTGTACCCAGGATCCGTGCTCGAATTTGGGCTATTTGTATCTCT
CCAATTTTAATTTGGTTTTTTATTTGTGTTTCGTAAATATTTGTTGATAC
ttcttttttaataaatcaGATTCCTCCCATAGGGTGGTAGTGTTAGTGGC
ACAGTAGATTGCATAGTAGCTTGCTTCAAATCTCTTCTCAAAAAGAAGTT
TCATAATAATTGTGGTCAATTCGCAATTCTGTTTTTGGTTAACAAGAAAT
AGTTTTATACCTCTCCGAAAGCcgctattttttcaagaaatttggTAGTT
TAAGTTAGCGTGGAATGTGCTAAACCACTTTCAATTGAGCTAAGATCTGA
TAATGTCTGTCTGGGCTTACACTTAGGCTTCTCTCGATaaaaatactgaa
gttgagcccagtgcagTGCGCACTTTTGACTATTCACTAAAGTCCGCTAC
ATTTCCGTCCGTAGTTGGCCACTAAATTGTATCTTTCCTTTTCTTAGGGT
CAAATATGTTTGGACATCTTGAAAGACAATTGGAGTCCGGCATTCACCGT
CTCCAAAGTACTTCTCTCGGTGACGGCACTTTTGACCGATTGTAACCCAG
GTAacaaacaaattttcaaattgactAATTTACTTTTCTTAATATCTGAA
TTCTTCATACAACTTACCACTACCTACGAGTCGCCATTGAGAGTTCTCGC
CACTCTCGAAACTGTATAACTAAAAAACGCCTacaattttattcaaattt
gtcaGGTTTTACTATTGTACTTTAAGGgatgaaaatatgaaatctaAAAA
TCTTGGGTAAAAACGAATGTAATGGCAATTAATCAACGAAAAGAAGTTTT
GTCTCGTGAAATGTCAAAAGTAGTTTCCTTTCTAAAGTACGCtgcttctt
caaatttttaaaaatacgagacgaattttcatttttcagctgATCCATTG
GTTGGAAACATCGCACAACAATTTCTTTCAAACCGTGAAGAGCACGACAC
GATCGCCCGTGAGTGGACCCGAAGATACGCTACCTAAATGCTTCCCAGCA
AAATCTGTTTCTCAAATCATGTAAATATCTCTGTTAAACAGAAAGTGATG
GAGTCGAGTTGGAAAGGGAGAGAAGCTTAACTGCTGTGAAGTGATGTTAT
CCAATAAGAGTTGTTTGAACTGACGAGGATGTGTTCTGGAAGGTTCAGCT
TAGATGACGATAATGATGTTGTTTTCTCTCGACTCTGGCGGTAAATGAAT
TGACATCAATGTAAGTGTTAATGACAGTCACCAAGCTCCTACAAAGCaaa
gattgaaaaagaattgaGAGTATCAGTCGAAATATGAACAAACACTCATT
AAAAACTTGATCGCAGTTTATAGAAGTATGCATGCACGCTTTTCGCTTTC
TACTCGGGGAAgatatgtttcaattttcatgccTTCCGGCTGAGTGGAAT
ACCATCACTTGTACCATCACAGTTGAagtaatttcaagaattttaatcct
aattgcccccgcaaggagcgcagcgactgaggaggcattcatagcttcac
gcaatatattgaactggaatctcgattttttgcgaattgtttttgttttt
gNN

Coding sequence (CDS) from alignment at scaffold_247:330200..341302+

>TCONS_00054953 ID=TCONS_00054953|Name=TCONS_00054953|organism=Clytia hemisphaerica|type=CDS|length=3285bp|location=Sequence derived from alignment at scaffold_247:330200..341302+ (Clytia hemisphaerica)
ATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGAGTTCAGT
TGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCATCCACCC
TGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATCAACCTCC
ACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTGCCGGCAA
GAAGAAAGTTTCAACTGCTGTTAAAAGaattcAACGTGAATTGACAGACA
TTACTCTCGACCCTCCGCCTAATTGCAGTGCTGGACCAAAAGGCGACAAC
TTGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCGTCTATCA
AGGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTATCCCTTTA
AACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAACATCAAC
TCGCAGGGTCAAATATGTTTGGACATCTTGAAAGACAATTGGAGTCCGGC
ATTCACCGTCTCCAAAGTACTTCTCTCGGTGACGGCACTTTTGACCGATT
GTAACCCAGctgATCCATTGGTTGGAAACATCGCACAACAATTTCTTTCA
AACCGTGAAGAGCACGACACGATCGCCCGTGAGTGGACCCGAAGATACGC
TACCTAAATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGA
GTTCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCA
TCCACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATC
AACCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTG
CCGGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGaattcAACGTGAATTG
ACAGACATTACTCTCGACCCTCCGCCTAATTGCAGTGCTGGACCAAAAGG
CGACAACTTGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCG
TCTATCAAGGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTAT
CCCTTTAAACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAA
CATCAACTCGCAGGGTCAAATATGTTTGGACATCTTGAAAGACAATTGGA
GTCCGGCATTCACCGTCTCCAAAGTACTTCTCTCGGTGACGGCACTTTTG
ACCGATTGTAACCCAGctgATCCATTGGTTGGAAACATCGCACAACAATT
TCTTTCAAACCGTGAAGAGCACGACACGATCGCCCGTGAGTGGACCCGAA
GATACGCTACCTAAATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACG
ACAGAGAGTTCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTAT
CTCTTCATCCACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGG
CAAGATCAACCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCC
AAAACTGCCGGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGaattcAACG
TGAATTGACAGACATTACTCTCGACCCTCCGCCTAATTGCAGTGCTGGAC
CAAAAGGCGACAACTTGTATGATTGGGTGGGTACCATCCTCGGACCACAA
GGAACCGTCTATCAAGGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTC
AGACTATCCCTTTAAACCGCCCAAAGTGATCTTCAGAACGCGCATTTATC
ACTGCAACATCAACTCGCAGGGTCAAATATGTTTGGACATCTTGAAAGAC
AATTGGAGTCCGGCATTCACCGTCTCCAAAGTACTTCTCTCGGTGACGGC
ACTTTTGACCGATTGTAACCCAGctgATCCATTGGTTGGAAACATCGCAC
AACAATTTCTTTCAAACCGTGAAGAGCACGACACGATCGCCCGTGAGTGG
ACCCGAAGATACGCTACCTAAATGGCAGCCAGTAGGAATACAGCAGCAGC
CAACACGACAGAGAGTTCAGTTGACCCTGATTCCACTGCAGAAACGTCTC
GAGGTATCTCTTCATCCACCCTGGGGTCATCTACTTCACAAGACAACTCT
TCCATGGCAAGATCAACCTCCACATCTGCACCCTTCAAACGCTCGAAACC
TCCAGCCAAAACTGCCGGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGaa
ttcAACGTGAATTGACAGACATTACTCTCGACCCTCCGCCTAATTGCAGT
GCTGGACCAAAAGGCGACAACTTGTATGATTGGGTGGGTACCATCCTCGG
ACCACAAGGAACCGTCTATCAAGGAGGCGTGTTCTTCCTGGAGATTACTT
TCCCTTCAGACTATCCCTTTAAACCGCCCAAAGTGATCTTCAGAACGCGC
ATTTATCACTGCAACATCAACTCGCAGGGTCAAATATGTTTGGACATCTT
GAAAGACAATTGGAGTCCGGCATTCACCGTCTCCAAAGTACTTCTCTCGG
TGACGGCACTTTTGACCGATTGTAACCCAGctgATCCATTGGTTGGAAAC
ATCGCACAACAATTTCTTTCAAACCGTGAAGAGCACGACACGATCGCCCG
TGAGTGGACCCGAAGATACGCTACCTAAATGGCAGCCAGTAGGAATACAG
CAGCAGCCAACACGACAGAGAGTTCAGTTGACCCTGATTCCACTGCAGAA
ACGTCTCGAGGTATCTCTTCATCCACCCTGGGGTCATCTACTTCACAAGA
CAACTCTTCCATGGCAAGATCAACCTCCACATCTGCACCCTTCAAACGCT
CGAAACCTCCAGCCAAAACTGCCGGCAAGAAGAAAGTTTCAACTGCTGTT
AAAAGaattcAACGTGAATTGACAGACATTACTCTCGACCCTCCGCCTAA
TTGCAGTGCTGGACCAAAAGGCGACAACTTGTATGATTGGGTGGGTACCA
TCCTCGGACCACAAGGAACCGTCTATCAAGGAGGCGTGTTCTTCCTGGAG
ATTACTTTCCCTTCAGACTATCCCTTTAAACCGCCCAAAGTGATCTTCAG
AACGCGCATTTATCACTGCAACATCAACTCGCAGGGTCAAATATGTTTGG
ACATCTTGAAAGACAATTGGAGTCCGGCATTCACCGTCTCCAAAGTACTT
CTCTCGGTGACGGCACTTTTGACCGATTGTAACCCAGctgATCCATTGGT
TGGAAACATCGCACAACAATTTCTTTCAAACCGTGAAGAGCACGACACGA
TCGCCCGTGAGTGGACCCGAAGATACGCTACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034631XLOC_034631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054953-exon-scaffold_247-1491911889:330200..330784TCONS_00054953-exon-scaffold_247-1491911889:330200..330784Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:330200..330784TCONS_00054953-exon-scaffold_247-1510915933:330200..330784Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:330200..330784TCONS_00054953-exon-scaffold_247-1575043694:330200..330784Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:331122..331276TCONS_00054953-exon-scaffold_247-1491911889:331122..331276Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:331122..331276TCONS_00054953-exon-scaffold_247-1510915933:331122..331276Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:331122..331276TCONS_00054953-exon-scaffold_247-1575043694:331122..331276Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:334366..334607TCONS_00054953-exon-scaffold_247-1491911889:334366..334607Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:334366..334607TCONS_00054953-exon-scaffold_247-1510915933:334366..334607Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:334366..334607TCONS_00054953-exon-scaffold_247-1575043694:334366..334607Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:339158..339208TCONS_00054953-exon-scaffold_247-1491911889:339158..339208Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:339158..339208TCONS_00054953-exon-scaffold_247-1510915933:339158..339208Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:339158..339208TCONS_00054953-exon-scaffold_247-1575043694:339158..339208Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:339477..339654TCONS_00054953-exon-scaffold_247-1491911889:339477..339654Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:339477..339654TCONS_00054953-exon-scaffold_247-1510915933:339477..339654Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:339477..339654TCONS_00054953-exon-scaffold_247-1575043694:339477..339654Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:340197..340299TCONS_00054953-exon-scaffold_247-1491911889:340197..340299Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:340197..340299TCONS_00054953-exon-scaffold_247-1510915933:340197..340299Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:340197..340299TCONS_00054953-exon-scaffold_247-1575043694:340197..340299Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1491911889:340639..341302TCONS_00054953-exon-scaffold_247-1491911889:340639..341302Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1510915933:340639..341302TCONS_00054953-exon-scaffold_247-1510915933:340639..341302Clytia hemisphaericaexon
TCONS_00054953-exon-scaffold_247-1575043694:340639..341302TCONS_00054953-exon-scaffold_247-1575043694:340639..341302Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054953-proteinTCONS_00054953-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:330200..341302 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.71781	3.93213	5.50574	6.01119	22.6794	19.7102	18.3543	19.287	16.3563	11.8024	6.20738	6.41734	20.9238	12.0758	23.4391	19.5321	22.271	21.9915	17.3806	20.0081	20.3026	13.0076	10.2394	22.8902	8.59998	16.6795	22.8203	23.9477	12.3849	16.4774
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
Blast
[Close]
BLAST of TCONS_00054953 vs. Swiss-Prot (Human)
Match: UB2E3 (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 8.894e-86
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 3 
Query:  894 RSTSTSAPFKRSKPPAKTAGKKKVSTAVKRIQRELTDITLDPPPNCSAGPKGDNLYDWVGTILGPQGTVYQGGVFFLEITFPSDYPFKPPKVIFRTRIYHCNINSQGQICLDILKDNWSPAFTVSKVLLSVTALLTDCNPADPLVGNIAQQFLSNREEHDTIAREWTRRYAT 1409
            R  S +   K +K  +KT  K  +ST+ KRIQ+EL +ITLDPPPNCSAGPKGDN+Y+W  TILGP G+VY+GGVFFL+ITF SDYPFKPPKV FRTRIYHCNINSQG ICLDILKDNWSPA T+SKVLLS+ +LLTDCNPADPLVG+IA Q+L+NR EHD IAR+WT+RYAT
Sbjct:   38 RKPSATQQKKNTKLSSKTTAK--LSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT 207
The following BLAST results are available for this feature:
BLAST of TCONS_00054953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2E38.894e-8673.26Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
back to top