TCONS_00054925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054925
Unique NameTCONS_00054925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054925 ID=TCONS_00054925|Name=TCONS_00054925|organism=Clytia hemisphaerica|type=transcript|length=318bp
ttgatattttcaaagaagCAGAAGCCCTGAAATGTCGGAGCATTTCTATT
GCAGCAACAGAATTCAAATCTGTCAGCAGAAAGAGGGTCGCTGAAATTTA
TGTCGAAgctttaaagaaaaagaatatgGGACACTTGAAACTTGTACGTT
TCAGTGGCAAGAAAAGCCAGCTCGGTGCCGTTTTTCGAGATCTcgataaa
atattgaaatcagttttattgaaaggaCAGANTAAAGAAAAAGAATATGG
GACACTTGAAACTTGTACGTTTCAGTGGCAAGAAAAGCCAGCTCGGTGCC
GTTTTTCGAGATCTcgat
Run BLAST on NCBI

protein sequence of TCONS_00054925-protein

>TCONS_00054925-protein ID=TCONS_00054925-protein|Name=TCONS_00054925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
DIFKEAEALKCRSISIAATEFKSVSRKRVAEIYVEALKKKNMGHLKLVRF
SGKKSQLGAVFRDLDKILKSVLLKGQXKEKEYGTLETCTFQWQEKPARCR
FSRSR
Run BLAST on NCBI

transcript from alignment at scaffold_246:223146..223463

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054925 ID=TCONS_00054925|Name=TCONS_00054925|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_246:223146..223463 (Clytia hemisphaerica)
atcgAGATCTCGAAAAACGGCACCGAGCTGGCTTTTCTTGCCACTGAAAC
GTACAAGTTTCAAGTGTCCCATATTCTTTTTCTTTANTCTGtcctttcaa
taaaactgatttcaatattttatcgAGATCTCGAAAAACGGCACCGAGCT
GGCTTTTCTTGCCACTGAAACGTACAAGTTTCAAGTGTCCcatattcttt
ttctttaaagcTTCGACATAAATTTCAGCGACCCTCTTTCTGCTGACAGA
TTTGAATTCTGTTGCTGCAATAGAAATGCTCCGACATTTCAGGGCTTCTG
cttctttgaaaatatcaa

Coding sequence (CDS) from alignment at scaffold_246:223146..223463

>TCONS_00054925 ID=TCONS_00054925|Name=TCONS_00054925|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_246:223146..223463 (Clytia hemisphaerica)
tcgAGATCTCGAAAAACGGCACCGAGCTGGCTTTTCTTGCCACTGAAACG
TACAAGTTTCAAGTGTCCCATATTCTTTTTCTTTANTCTGtcctttcaat
aaaactgatttcaatattttatcgAGATCTCGAAAAACGGCACCGAGCTG
GCTTTTCTTGCCACTGAAACGTACAAGTTTCAAGTGTCCcatattctttt
tctttaaagcTTCGACATAAATTTCAGCGACCCTCTTTCTGCTGACAGAT
TTGAATTCTGTTGCTGCAATAGAAATGCTCCGACATTTCAGGGCTTCTGc
ttctttgaaaatatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034612XLOC_034612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054925-proteinTCONS_00054925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054925-exon-scaffold_246-1491911889:223146..223463TCONS_00054925-exon-scaffold_246-1491911889:223146..223463Clytia hemisphaericaexon
TCONS_00054925-exon-scaffold_246-1510915933:223146..223463TCONS_00054925-exon-scaffold_246-1510915933:223146..223463Clytia hemisphaericaexon
TCONS_00054925-exon-scaffold_246-1575043694:223146..223463TCONS_00054925-exon-scaffold_246-1575043694:223146..223463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:223146..223463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.360491	0.213205	0.346796	0.520025	0.391696	0.822707	0.67937	0.329707	0.650208	1.12791	1.57339	1.20292	1.77346	0	1.51441	0.691883	0.724006	0.47123	0.893253	0.373134	0.795938	0	0.233137	1.16309	0	0.51463	0.36801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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