TCONS_00054920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054920
Unique NameTCONS_00054920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054920 ID=TCONS_00054920|Name=TCONS_00054920|organism=Clytia hemisphaerica|type=transcript|length=467bp
CCATACCTTGTCATTCGTTGAGCAGTACCCAGCAACATTACCTCAGTTTt
accttttttgaaatttagtaaAAGTTCATTCTCCTCACAATATTTGACAA
TGGTCGATAGATCTTTATTGAGGGCAGTTTCGATTTCATTTGTTGTTTTG
GCACCAAAATAGATAACAGTGTCATCGGCATATTGGATGATTGAAGAGTG
TTGGATAGAATCACAAAGGTCGTTAAAACAGACAATGAAGAGGAGAGGCC
CAAGAATTGACCCCTGTGGGACTCCTGATGTGATAGCCTCTTTTTCCGAA
AAGATGCTATTGATTTCAACACATTGGGTACGATTGAATAGATAGTCGGT
GATCCAGGCTAGTTCTGGCCCAAAAACATCATgtaataaaagtttttcaa
tgatCAAACTGTGCCCCATTGtatcaaaggctttagaaaGATCTAAAAAC
AGACATCCAACGAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00054920-protein

>TCONS_00054920-protein ID=TCONS_00054920-protein|Name=TCONS_00054920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
LLVGCLFLDLSKAFDTMGHSLIIEKLLLHDVFGPELAWITDYLFNRTQCV
EINSIFSEKEAITSGVPQGSILGPLLFIVCFNDLCDSIQHSSIIQYADDT
VIYFGAKTTNEIETALNKDLSTIVKYCEENELLLNFKKGKTEVMLLGTAQ
RMTRY
Run BLAST on NCBI

transcript from alignment at scaffold_246:37987..38453

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054920 ID=TCONS_00054920|Name=TCONS_00054920|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at scaffold_246:37987..38453 (Clytia hemisphaerica)
CTTCTCGTTGGATGTCTGTTTTTAGATCtttctaaagcctttgataCAAT
GGGGCACAGTTTGatcattgaaaaacttttattacATGATGTTTTTGGGC
CAGAACTAGCCTGGATCACCGACTATCTATTCAATCGTACCCAATGTGTT
GAAATCAATAGCATCTTTTCGGAAAAAGAGGCTATCACATCAGGAGTCCC
ACAGGGGTCAATTCTTGGGCCTCTCCTCTTCATTGTCTGTTTTAACGACC
TTTGTGATTCTATCCAACACTCTTCAATCATCCAATATGCCGATGACACT
GTTATCTATTTTGGTGCCAAAACAACAAATGAAATCGAAACTGCCCTCAA
TAAAGATCTATCGACCATTGTCAAATATTGTGAGGAGAATGAACTTttac
taaatttcaaaaaaggtaAAACTGAGGTAATGTTGCTGGGTACTGCTCAA
CGAATGACAAGGTATGG

Coding sequence (CDS) from alignment at scaffold_246:37987..38453

>TCONS_00054920 ID=TCONS_00054920|Name=TCONS_00054920|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_246:37987..38453 (Clytia hemisphaerica)
CTTCTCGTTGGATGTCTGTTTTTAGATCtttctaaagcctttgataCAAT
GGGGCACAGTTTGatcattgaaaaacttttattacATGATGTTTTTGGGC
CAGAACTAGCCTGGATCACCGACTATCTATTCAATCGTACCCAATGTGTT
GAAATCAATAGCATCTTTTCGGAAAAAGAGGCTATCACATCAGGAGTCCC
ACAGGGGTCAATTCTTGGGCCTCTCCTCTTCATTGTCTGTTTTAACGACC
TTTGTGATTCTATCCAACACTCTTCAATCATCCAATATGCCGATGACACT
GTTATCTATTTTGGTGCCAAAACAACAAATGAAATCGAAACTGCCCTCAA
TAAAGATCTATCGACCATTGTCAAATATTGTGAGGAGAATGAACTTttac
taaatttcaaaaaaggtaAAACTGAGGTAATGTTGCTGGGTACTGCTCAA
CGAATGACAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034607XLOC_034607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054920-exon-scaffold_246-1491911889:37987..38453TCONS_00054920-exon-scaffold_246-1491911889:37987..38453Clytia hemisphaericaexon
TCONS_00054920-exon-scaffold_246-1510915933:37987..38453TCONS_00054920-exon-scaffold_246-1510915933:37987..38453Clytia hemisphaericaexon
TCONS_00054920-exon-scaffold_246-1575043694:37987..38453TCONS_00054920-exon-scaffold_246-1575043694:37987..38453Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054920-proteinTCONS_00054920-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:37987..38453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.546845	0.939378	0.46709	0.30465	2.32065	1.82966	0.59303	1.05511	0.125073	0.143533	1.36767	0.366325	0.671403	0	1.04977	0.8158	0.412915	1.25157	0.438531	1.00302	0.570031	0.444852	0	0.409149	0.367504	0	0.188554	0	0.212582	0.462233
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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