TCONS_00054919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054919
Unique NameTCONS_00054919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054919 ID=TCONS_00054919|Name=TCONS_00054919|organism=Clytia hemisphaerica|type=transcript|length=819bp
CCGGATTCCGGAAActctacattttttttattttcgccaaaTCTATATTT
TCTACAATAAACCATCAGTAATaccttttgatgaaaatgtttgcaaaaaa
tatacataaaacaaaagaaaaattcacaCCCTGTACTTTGATAGTGTATG
ATTTTTGTAACGGACCCTTTATcgcccgcacatacccatcactCATTCTT
GCCCAAGTATCCTCTTGGTTTTTAGATGGACGCAGAAAGGAATACCAGGC
GGTTTTTTGAAGTCAAATGAACAAAAAAGAACGCTGTCATCTAAATTAAA
AATCTAAACCTTTTAAAGAATCGTGAAATGAAAAGATCATAATTCCTATC
ACTTTTACTTAGGTGAAAAAATGTTAACTTAAAAAATGAACCAAGAATAA
TGAACGAAAGATAAACCAAATATATCAATAAAACACTTCATCTCCTATTA
CTTAGGAGTAATGTATGTTTTAACTTTACGGAAATATCAACGTTATACTG
TAATGAACGAAAGACACGCTAAATATATCCACACAACAAATGTCAATTAA
ATAATGTACTAAAGATACGCTAAAAATATATTAAGTCTCGCGTCTATTct
aataatttccaaaaaaatgttgttaTAAAGTTTCGCGACTGTTctaataa
tttccaaaaaatgcaTTGGCAAATGCGTAGTcgtaaatctttaaaaaatt
ttccaagggTGGTAGTTCTTCATCCAATGAGCCACGCGGCATTTCTATCT
GGTTGGCGCAAATGTGCGCTTTAGGCGTGTAATCGATGACCTTCACCTTT
ATCTCTTCACCATTCTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_246:2..820

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054919 ID=TCONS_00054919|Name=TCONS_00054919|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_246:2..820 (Clytia hemisphaerica)
ACGAGAATGGTGAAGAGATAAAGGTGAAGGTCATCGATTACACGCCTAAA
GCGCACATTTGCGCCAACCAGATAGAAATGCCGCGTGGCTCATTGGATGA
AGAACTACCAcccttggaaaattttttaaagatttacgACTACGCATTTG
CCAAtgcattttttggaaattattagAACAGTCGCGAAACTTTAtaacaa
catttttttggaaattattagAATAGACGCGAGACTTAATATATTTTTAG
CGTATCTTTAGTACATTATTTAATTGACATTTGTTGTGTGGATATATTTA
GCGTGTCTTTCGTTCATTACAGTATAACGTTGATATTTCCGTAAAGTTAA
AACATACATTACTCCTAAGTAATAGGAGATGAAGTGTTTTATTGATATAT
TTGGTTTATCTTTCGTTCATTATTCTTGGTTCATTTTTTAAGTTAACATT
TTTTCACCTAAGTAAAAGTGATAGGAATTATGATCTTTTCATTTCACGAT
TCTTTAAAAGGTTTAGATTTTTAATTTAGATGACAGCGTTCTTTTTTGTT
CATTTGACTTCAAAAAACCGCCTGGTATTCCTTTCTGCGTCCATCTAAAA
ACCAAGAGGATACTTGGGCAAGAATGagtgatgggtatgtgcgggcgATA
AAGGGTCCGTTACAAAAATCATACACTATCAAAGTACAGGGtgtgaattt
ttcttttgttttatgtatattttttgcaaacattttcatcaaaaggtATT
ACTGATGGTTTATTGTAGAAAATATAGAtttggcgaaaataaaaaaaatg
tagagTTTCCGGAATCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034606XLOC_034606Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054919-exon-scaffold_246-1491911889:2..820TCONS_00054919-exon-scaffold_246-1491911889:2..820Clytia hemisphaericaexon
TCONS_00054919-exon-scaffold_246-1510915933:2..820TCONS_00054919-exon-scaffold_246-1510915933:2..820Clytia hemisphaericaexon
TCONS_00054919-exon-scaffold_246-1575043694:2..820TCONS_00054919-exon-scaffold_246-1575043694:2..820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:2..820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0567154	0	0.0644259	0.470594	0.619783	0.972064	0.980037	0.245053	0.546367	0.412469	0.735953	0.812291	0.843573	0	0	0	0	0	0	0	0	0.0666854	0.0606267	0.0624441	0.613028	0	0	0	0.0657696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top