TCONS_00054910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054910
Unique NameTCONS_00054910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054910 ID=TCONS_00054910|Name=TCONS_00054910|organism=Clytia hemisphaerica|type=transcript|length=1341bp
TCAAGGTCAAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCA
TATTTTACTGGAAATCCCAGCACCAGACTACGAAGGAGCACCTTCTTTGC
CACCTGTTGATTACAACCAAAACGCACAACAACCTGTCACAAAGTCCTAC
ATCCGCAACAATATGTCTGATGCCATGAAAGAAATCTCCAAAGATATTAA
CTTCAGAGCAAAACAaGATCGTCAGCAGCGACCGGAATTCTTAGCCAAAC
AACATCAACTGAAATCGAGTGCTgccaaaaaacaacaacaaaaagatcAC
GAAGAAAACAACGAACTCTTCGCAAAACTAAAATCACGATCGCAAGCTAT
CGATAATGACGAGagacaaaaagaagaagaagctcAACGTCCAGAGTTTA
TGAAAGTCAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAG
ATACAAACTCATCACTTGAATTACCCAGGATTCTCTGTTTGGCGTTGGAC
TGAAGATGAAACTGGCCTCAGATTGGCTGAATTTTCCTCCCCTTGTTTTC
TGTGAACGGAAATATGTCGGACAAGATACATGTTGGAACTTTGAAATTTC
ACAcatttcaaacattttgttttaaagATGGTTTTATTTGCTCTCGCAAT
GGACAGAATCTTGGACAGAATCTTCTGTTcgaatcttttgttttttagct
TTATGTTGTGTTAAGCTAGGATTAATCACAGCTTTGAGCGCCAACGAAGC
TGAAACTCTGTCGGCTAAATAATGCGAGGAATCGATGAAAAACCAGCGGG
GCACAGCTGCAGGGCACTGACCCATAACTGGGTGGCTCTGTCTAATTTTG
ATTCTCAGAAGCGATCGACCATTTCAAGATAGTACTTGGTACTGGATTTT
GGTAAATACTAAAGTAAATACCAGTTACTAAAAAGGGGGCGGTGGTAGTT
AAAACAATTCCTTCTGAAAGTACCCTATGGATTAGTACCCTGCGGCTGTA
TCCTTCCCTGtgaaaaaacatgttttttttattctggttttttttcgaag
atttaCTGTTCCATCATTGCTGAATAGTTTTAGTCAAGCACAGTCTAAAT
ATTCATATGTCTATGGTCAAGTGTGATTCTAACGAGTTTTAAAGCACTGT
TAGTCTTCGCAAACATACTTCCTATGTAAACCTGAGATGACAGAAGATAT
ATTTCCCTACGAGCGTTCTCCATTTTTGTAGATTCTTCAAAATTGTATCG
ATAAGATttttgtatatatattttttctaataaagaattaGTTTTAGTAC
AAAGTAAATCATTATGTAGTTTGAAAATATCttactttgaa
Run BLAST on NCBI

protein sequence of TCONS_00054910-protein

>TCONS_00054910-protein ID=TCONS_00054910-protein|Name=TCONS_00054910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
SRSKKISSDSLRGIPWHILLEIPAPDYEGAPSLPPVDYNQNAQQPVTKSY
IRNNMSDAMKEISKDINFRAKQDRQQRPEFLAKQHQLKSSAAKKQQQKDH
EENNELFAKLKSRSQAIDNDERQKEEEAQRPEFMKVKLKSGPNTPIASS
Run BLAST on NCBI

transcript from alignment at scaffold_246:127084..130106-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054910 ID=TCONS_00054910|Name=TCONS_00054910|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at scaffold_246:127084..130106- (Clytia hemisphaerica)
TCAAGGTCAAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCA
TATTTTACGTAATTTTATTCATCATTTGATCCGTTTTTTATTGAGGGATT
TAGAATAAGTGAATGATGGGGAACACATTTTCCAGTTGCTTTGTTTCCCA
TTCAGCCTCTTTTTCTTTCATATTTTATTTACCAGTTTATCAGTTTGAAA
CTTCTTCTTCAAAATAAGGAAAAAGAAAGAAAATTTAGGAAAAGGAAATC
TTTCATACAAAATTCCTTAATTATTTAAAGGAGAGTGTGTTAGGATTTCC
AAGGGATATACTTTATTATAGTCTCACCTCTCACTATATGAGATTCACTT
GATGAAAGTTTTGAATGGAAATGGATGAAAATCTTATAACACTTTCTTTT
TCGTCTTGATGTGTTTAAATCTTATTCGTTCTGTAAATCTTCTTCTTTGA
ACATGTGAATAATTAGTAGTTTCAAGTATTGTTTGTTGTCAAGAGATTAC
CGGGTGATTAATCAGTAATTGGCAATTTCCTTCTTCATCTAATTACAAGG
CAGTAGAAAGATAATTAGAAGCATCCATGTATGTTTAAAATTCTTCGTAG
CTTTACTACTCGTTTGAAGTGTTTACATGTTTGATCAGATATTTACGAGA
AAAATCAATAAGATAGAAAAGTCGAGAAGAATTTGATGGGAAATGATAGA
TCTAAATCTAACCATATTTAGTTTAGCTAATAGAAGAGGATTTTTATGTT
GAAATTAATTTTCGATGCGTTTGTTCCTATTTCGTAGTTTTTTAAAAGTT
GCCACCGTAGGTTACATGGACATGGCAAGGCTTCATGATGTATACTGTCA
TAAATTTGCCTCCAAGTTCGTCACTAAATGACGTTAATGATGATATAAAG
GACAGCTCTTTACTTTGTGACTGCTTTTTAAAATAATTCTTGATAAAAAG
CTGGTATTTTGCTATGAATGACTTATCAGAATCAAAGGCAGTTTGAAATC
CAGGAGTCTAATGTCATGTTTTTGGTTGTTCTGTTGTTGTTTTTGTCATT
GTATACCTGAAATAAATTTCTCATGAGAGTCATGTTTCTCAATGCTTTCT
TTATATATCATGATTGTGAAAGATCCTTAAGTTGAAAATTTATCAAAGTT
TATTTCCAATTCATAGAGAGTATAGATGCAGTATTTAGTTTTGTTGAGAT
GGTTATATTTTGTTTTGAGTGTAGATTAAATGTGCAACTCTGAAGCTCGA
TTTGATTACCTCTGCCTTGAGCCTGTATATTGTTCTTCATAGTTCGCTAT
ATTCTCTTATTTCAGTGGAAATCCCAGCACCAGACTACGAAGGAGCACCT
TCTTTGCCACCTGTTGATTACAACCAAAACGCACAACAACCTGTCACAAA
GTCCTACATCCGCAACAATATGTCTGATGCCATGAAAGAAATCTCCAAAG
ATATTAACTTCAGAGCAAAACAGTAAGTGTCGTTTACTTATGAAATTTAA
AGGAAGAAAAATATGGACAAATTTAGTAAACTCTAGACCCTAAATGTGTG
GTTTTTGTATACTTAGAGAAACTTACAGATGAAAAGTCTGGATGACTGCA
ATTTGGATTTTAGACGCTTATACCTTTGATCTTAGGGTGGAGAATCGTTC
CAATAAAATAGTGACAATAGCATATTTCTTACCATGAAATCTTCAAATAA
ACTCTTCCTTGTTTTGTTATTTTTCAGAGATCGTCAGCAGCGACCGGAAT
TCTTAGCCAAACAACATCAACTGAAATCGAGTGCTGCCAAAAAACAACAA
CAAAAAGATCACGAAGAAAACAACGAACTCTTCGCAAAACTAAAATCACG
ATCGCAAGCTATCGATAATGTATGTCTTTGATAAATTTTCTCATCTATTT
CGTAGTAAGCCTCATAAGCTATCGTATACACGTGTTAACTTATAAATCCC
TTAAGAGACTAAAGGCACCTCATTGAAAGTGTTAATAATCTATTTCGCAT
TTGAGTACCTCAACAACATTTCTCTATTCTCATTTTCAGGACGAGAGACA
AAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAAAGTCAAATTAAAAA
GTGGTCCAAATACTCCCATAGCGTCTTCATAGATACAAACTCATCACTTG
AATTACCCAGGATTCTCTGTTTGGCGTTGGACTGAAGATGAAACTGGCCT
CAGATTGGCTGAATTTTCCTCCCCTTGTTTTCTGTGAACGGAAATATGTC
GGACAAGATACATGTTGGAACTTTGAAATTTCACACATTTCAAACATTTT
GTTTTAAAGATGGTTTTATTTGCTCTCGCAATGGACAGAATCTTGGACAG
AATCTTCTGTTCGAATCTTTTGTTTTTTAGCTTTATGTTGTGTTAAGCTA
GGATTAATCACAGCTTTGAGCGCCAACGAAGCTGAAACTCTGTCGGCTAA
ATAATGCGAGGAATCGATGAAAAACCAGCGGGGCACAGCTGCAGGGCACT
GACCCATAACTGGGTGGCTCTGTCTAATTTTGATTCTCAGAAGCGATCGA
CCATTTCAAGATAGTACTTGGTACTGGATTTTGGTAAATACTAAAGTAAA
TACCAGTTACTAAAAAGGGGGCGGTGGTAGTTAAAACAATTCCTTCTGAA
AGTACCCTATGGATTAGTACCCTGCGGCTGTATCCTTCCCTGTGAAAAAA
CATGTTTTTTTTATTCTGGTTTTTTTTCGAAGATTTACTGTTCCATCATT
GCTGAATAGTTTTAGTCAAGCACAGTCTAAATATTCATATGTCTATGGTC
AAGTGTGATTCTAACGAGTTTTAAAGCACTGTTAGTCTTCGCAAACATAC
TTCCTATGTAAACCTGAGATGACAGAAGATATATTTCCCTACGAGCGTTC
TCCATTTTTGTAGATTCTTCAAAATTGTATCGATAAGATTTTTGTATATA
TATTTTTTCTAATAAAGAATTAGTTTTAGTACAAAGTAAATCATTATGTA
GTTTGAAAATATCTTACTTTGAA

Coding sequence (CDS) from alignment at scaffold_246:127084..130106-

>TCONS_00054910 ID=TCONS_00054910|Name=TCONS_00054910|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_246:127084..130106- (Clytia hemisphaerica)
GACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAAAGT
CAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGAGATCGT
CAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGC
TGCCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCG
CAAAACTAAAATCACGATCGCAAGCTATCGATAATTGGAAATCCCAGCAC
CAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAAC
GCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGC
CATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACATCAAGGTC
AAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCATATTTTAC
GACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAAAGT
CAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGAGATCGT
CAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGC
TGCCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCG
CAAAACTAAAATCACGATCGCAAGCTATCGATAATTGGAAATCCCAGCAC
CAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAAC
GCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGC
CATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACATCAAGGTC
AAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCATATTTTAC
GACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAAAGT
CAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGAGATCGT
CAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGC
TGCCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCG
CAAAACTAAAATCACGATCGCAAGCTATCGATAATTGGAAATCCCAGCAC
CAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAAC
GCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGC
CATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACATCAAGGTC
AAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCATATTTTAC
GACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTTATGAAAGT
CAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATAGAGATCGT
CAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGC
TGCCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCTTCG
CAAAACTAAAATCACGATCGCAAGCTATCGATAATTGGAAATCCCAGCAC
CAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAAC
GCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGC
CATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACATCAAGGTC
AAAGAAAATCTCTTCAGACAGCTTGAGAGGAATTCCTTGGCATATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034602XLOC_034602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054910-exon-scaffold_246-1575043694:130049..130106TCONS_00054910-exon-scaffold_246-1575043694:130049..130106Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1575043694:128635..128791TCONS_00054910-exon-scaffold_246-1575043694:128635..128791Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1575043694:128238..128379TCONS_00054910-exon-scaffold_246-1575043694:128238..128379Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1575043694:127084..128067TCONS_00054910-exon-scaffold_246-1575043694:127084..128067Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1510915933:130049..130106TCONS_00054910-exon-scaffold_246-1510915933:130049..130106Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1510915933:128635..128791TCONS_00054910-exon-scaffold_246-1510915933:128635..128791Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1510915933:128238..128379TCONS_00054910-exon-scaffold_246-1510915933:128238..128379Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1510915933:127084..128067TCONS_00054910-exon-scaffold_246-1510915933:127084..128067Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1491911889:130049..130106TCONS_00054910-exon-scaffold_246-1491911889:130049..130106Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1491911889:128635..128791TCONS_00054910-exon-scaffold_246-1491911889:128635..128791Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1491911889:128238..128379TCONS_00054910-exon-scaffold_246-1491911889:128238..128379Clytia hemisphaericaexon
TCONS_00054910-exon-scaffold_246-1491911889:127084..128067TCONS_00054910-exon-scaffold_246-1491911889:127084..128067Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054910-proteinTCONS_00054910-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:127084..130106 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66521	0.97308	0	1.06957	0	2.31446	0.0186415	0.00134046	3.81427e-07	4.02977e-06	0	0.0621511	6.53834	3.29581	0	0.582392	3.80444	1.66593	4.52438	7.07985	5.06147	4.37179	1.76752	0	0	2.37638e-09	5.33845	5.4662	0.0010954	0.0870468
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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