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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=transcript|length=592bp
AGATTGTTTTTTGCGGCGTTTCTCAGAACtatctttcaaaacaaaatggt
tgCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTTCA
TGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATCCA
ATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAATA
CAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTGTG
GTGcAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGA
GCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCA
TTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGT
TGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAAC
TAAATTTAAAGTATGCTGTTAATAGTATGTAATAGTAATCACACGGTGAC
CATACCATACATACATATGTGCGGGGGGGGGCGTATTGCGGAAATCGACT
GTTTTTTCCTTCGAGATTTTGGTAATGTCAACAAACGAGAAA Run BLAST on NCBI protein sequence of TCONS_00054909-protein >TCONS_00054909-protein ID=TCONS_00054909-protein|Name=TCONS_00054909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
RLFFAAFLRTIFQNKMVAANRMFIVGVLLNCVFMITIRCFPLVDSYPADP
MHMESKKVNCDGPGFQYKGTKISDDKLVVSFNCGAMEKSTVLACKDPNYR
ASSKRDSIENCDPMDGHFQTSDVTATDQMALVWLCIKKTGKPCTSKKKVN Run BLAST on NCBI transcript from alignment at scaffold_246:124482..125921- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at scaffold_246:124482..125921- (Clytia hemisphaerica)
AGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAAATGGT
TGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTTCA
TGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATCCA
AGTAAATATCTTCTGTTTATAAGAATTGGGATTTGTACAACCAAATAAGC
ATGTTTTGTTTTCGGACAGACATCCCCTTCTCACAGACCCGGTAGGATTT
TTCTGTCTGTGAGGGTAAAAATAACGGACTGAAACTCGATGGGAATAAAT
ATTCCCATATTTTTTATGGCTTGGGATTTAAATTATTTTATTTTTCAGTC
AGAAAGTTCACTGGGGATGGGAAAAATAATGAAATATTTTGCAGTGAGGA
TTGGTTCATTTGAATATTTTCAGTAGGGCATAATTAGTAAAGGATAATTT
TCCACCGAGGACGATATTTTGTCCAATTTTACCAGTGGGAAGGGGTTCCA
GCGGGTCTCTGGTGAAAAGGGGGTTGTGGACAGGGTACTGTATTATAAAA
GTTACGAAGATTCTTGCTTTTTGGTCTTGTTTCACAGAATACGAGCATCG
CGCATAAAGAGATATTAATTTATCAAACATGCATATTTGAAATGTTTCCA
ATGGAAACCCACAATAGAGTTGTGGAAACCCAGTGGGTGAATAAATAGAC
ATGATGTTTTCCGAGAAGGACCTGTTTATCATTTTCGGAATAATATTTCC
TGTATTTGAAGTATATGTCAACCTGAAAGCTTTCCAACCAATCAAACGTC
TTCATTTACTCTATCTAGTGCATATGGAATCAAAGAAAGTGAATTGTGAT
GGTCCTGGCTTTCAATACAAGGGGACGAAAATCAGTGACGACAAATTGGT
TGTATCTTTCAACTGTGGTGGTAAGGAAGGCATTTTTAATTTTTTTCGTT
AAATTTAATGCGAGAGTTTATAAAGGACTTATTCTCTAGTTGGTAGTGTA
GCCAGAAGGTGCTGTTAAAAACGTCATTTTTGAGAGGAATTTTAAAAGCA
GTGTTTGAAAATAGCGCGATATTCATTGATTCATAAATTCTCTTTTTTCA
GCAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGAGC
CTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCATT
TTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGTTG
TGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAACTA
AATTTAAAGTATGCTGTTAATAGTATGTAATAGTAATCACACGGTGACCA
TACCATACATACATATGTGCGGGGGGGGGCGTATTGCGGAAATCGACTGT
TTTTTCCTTCGAGATTTTGGTAATGTCAACAAACGAGAAA Coding sequence (CDS) from alignment at scaffold_246:124482..125921- >TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_246:124482..125921- (Clytia hemisphaerica)
CAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGAGCC
TCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCATTT
TCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGTTGT
GTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAACTAA
TGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAATAC
AAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTGTGG
TGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAAATG
GTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTT
CATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATC
CAACAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGA
GCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCA
TTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGT
TGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAAC
TAATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAA
TACAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTG
TGGTGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAA
ATGGTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGT
TTTCATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTG
ATCCAACAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTAT
CGAGCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGG
CCATTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCT
GGTTGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTT
AACTAATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTT
CAATACAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAA
CTGTGGTGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAAC
AAAATGGTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTG
TGTTTTCATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTG
CTGATCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054909-exon-scaffold_246-1575043694:125771..125921 | TCONS_00054909-exon-scaffold_246-1575043694:125771..125921 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1575043694:125002..125103 | TCONS_00054909-exon-scaffold_246-1575043694:125002..125103 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1575043694:124482..124820 | TCONS_00054909-exon-scaffold_246-1575043694:124482..124820 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1510915933:125771..125921 | TCONS_00054909-exon-scaffold_246-1510915933:125771..125921 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1510915933:125002..125103 | TCONS_00054909-exon-scaffold_246-1510915933:125002..125103 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1510915933:124482..124820 | TCONS_00054909-exon-scaffold_246-1510915933:124482..124820 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1491911889:125771..125921 | TCONS_00054909-exon-scaffold_246-1491911889:125771..125921 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1491911889:125002..125103 | TCONS_00054909-exon-scaffold_246-1491911889:125002..125103 | Clytia hemisphaerica | exon |
| TCONS_00054909-exon-scaffold_246-1491911889:124482..124820 | TCONS_00054909-exon-scaffold_246-1491911889:124482..124820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:124482..125921 - |
Blast
The following BLAST results are available for this feature:
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