TCONS_00054909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054909
Unique NameTCONS_00054909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=transcript|length=592bp
AGATTGTTTTTTGCGGCGTTTCTCAGAACtatctttcaaaacaaaatggt
tgCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTTCA
TGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATCCA
ATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAATA
CAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTGTG
GTGcAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGA
GCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCA
TTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGT
TGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAAC
TAAATTTAAAGTATGCTGTTAATAGTATGTAATAGTAATCACACGGTGAC
CATACCATACATACATATGTGCGGGGGGGGGCGTATTGCGGAAATCGACT
GTTTTTTCCTTCGAGATTTTGGTAATGTCAACAAACGAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00054909-protein

>TCONS_00054909-protein ID=TCONS_00054909-protein|Name=TCONS_00054909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
RLFFAAFLRTIFQNKMVAANRMFIVGVLLNCVFMITIRCFPLVDSYPADP
MHMESKKVNCDGPGFQYKGTKISDDKLVVSFNCGAMEKSTVLACKDPNYR
ASSKRDSIENCDPMDGHFQTSDVTATDQMALVWLCIKKTGKPCTSKKKVN
Run BLAST on NCBI

transcript from alignment at scaffold_246:124482..125921-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at scaffold_246:124482..125921- (Clytia hemisphaerica)
AGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAAATGGT
TGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTTCA
TGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATCCA
AGTAAATATCTTCTGTTTATAAGAATTGGGATTTGTACAACCAAATAAGC
ATGTTTTGTTTTCGGACAGACATCCCCTTCTCACAGACCCGGTAGGATTT
TTCTGTCTGTGAGGGTAAAAATAACGGACTGAAACTCGATGGGAATAAAT
ATTCCCATATTTTTTATGGCTTGGGATTTAAATTATTTTATTTTTCAGTC
AGAAAGTTCACTGGGGATGGGAAAAATAATGAAATATTTTGCAGTGAGGA
TTGGTTCATTTGAATATTTTCAGTAGGGCATAATTAGTAAAGGATAATTT
TCCACCGAGGACGATATTTTGTCCAATTTTACCAGTGGGAAGGGGTTCCA
GCGGGTCTCTGGTGAAAAGGGGGTTGTGGACAGGGTACTGTATTATAAAA
GTTACGAAGATTCTTGCTTTTTGGTCTTGTTTCACAGAATACGAGCATCG
CGCATAAAGAGATATTAATTTATCAAACATGCATATTTGAAATGTTTCCA
ATGGAAACCCACAATAGAGTTGTGGAAACCCAGTGGGTGAATAAATAGAC
ATGATGTTTTCCGAGAAGGACCTGTTTATCATTTTCGGAATAATATTTCC
TGTATTTGAAGTATATGTCAACCTGAAAGCTTTCCAACCAATCAAACGTC
TTCATTTACTCTATCTAGTGCATATGGAATCAAAGAAAGTGAATTGTGAT
GGTCCTGGCTTTCAATACAAGGGGACGAAAATCAGTGACGACAAATTGGT
TGTATCTTTCAACTGTGGTGGTAAGGAAGGCATTTTTAATTTTTTTCGTT
AAATTTAATGCGAGAGTTTATAAAGGACTTATTCTCTAGTTGGTAGTGTA
GCCAGAAGGTGCTGTTAAAAACGTCATTTTTGAGAGGAATTTTAAAAGCA
GTGTTTGAAAATAGCGCGATATTCATTGATTCATAAATTCTCTTTTTTCA
GCAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGAGC
CTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCATT
TTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGTTG
TGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAACTA
AATTTAAAGTATGCTGTTAATAGTATGTAATAGTAATCACACGGTGACCA
TACCATACATACATATGTGCGGGGGGGGGCGTATTGCGGAAATCGACTGT
TTTTTCCTTCGAGATTTTGGTAATGTCAACAAACGAGAAA

Coding sequence (CDS) from alignment at scaffold_246:124482..125921-

>TCONS_00054909 ID=TCONS_00054909|Name=TCONS_00054909|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_246:124482..125921- (Clytia hemisphaerica)
CAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGAGCC
TCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCATTT
TCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGTTGT
GTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAACTAA
TGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAATAC
AAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTGTGG
TGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAAATG
GTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGTTTT
CATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTGATC
CAACAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTATCGA
GCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGGCCA
TTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCTGGT
TGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTTAAC
TAATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTTCAA
TACAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAACTG
TGGTGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAACAAA
ATGGTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTGTGT
TTTCATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTGCTG
ATCCAACAATGGAAAAATCAACGGTGTTGGCTTGTAAAGATCCGAACTAT
CGAGCCTCCTCCAAACGCGATTCCATAGAGAATTGTGATCCTATGGATGG
CCATTTTCAGACATCTGATGTCACGGCGACTGACCAGATGGCTTTAGTCT
GGTTGTGTATTAAAAAGACTGGAAAACCCTGCACTTCCAAAAAGAAAGTT
AACTAATGCATATGGAATCAAAGAAAGTGAATTGTGATGGTCCTGGCTTT
CAATACAAGGGGACGAAAATCAGTGACGACAAATTGGTTGTATCTTTCAA
CTGTGGTGAGATTGTTTTTTGCGGCGTTTCTCAGAACTATCTTTCAAAAC
AAAATGGTTGCTGCAAATCGGATGTTTATAGTCGGAGTTTTGTTAAATTG
TGTTTTCATGATAACGATCAGATGTTTTCCACTGGTGGACTCTTATCCTG
CTGATCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034601XLOC_034601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054909-proteinTCONS_00054909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054909-exon-scaffold_246-1575043694:125771..125921TCONS_00054909-exon-scaffold_246-1575043694:125771..125921Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1575043694:125002..125103TCONS_00054909-exon-scaffold_246-1575043694:125002..125103Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1575043694:124482..124820TCONS_00054909-exon-scaffold_246-1575043694:124482..124820Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1510915933:125771..125921TCONS_00054909-exon-scaffold_246-1510915933:125771..125921Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1510915933:125002..125103TCONS_00054909-exon-scaffold_246-1510915933:125002..125103Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1510915933:124482..124820TCONS_00054909-exon-scaffold_246-1510915933:124482..124820Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1491911889:125771..125921TCONS_00054909-exon-scaffold_246-1491911889:125771..125921Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1491911889:125002..125103TCONS_00054909-exon-scaffold_246-1491911889:125002..125103Clytia hemisphaericaexon
TCONS_00054909-exon-scaffold_246-1491911889:124482..124820TCONS_00054909-exon-scaffold_246-1491911889:124482..124820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:124482..125921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18066	0.104882	0	0	0	2.62002	4.4597	4.99575	2.80395	4.97393	4.81196	9.30252	6.2699	7.46906	15.3535	13.2122	12.9006	0	0	7.52313	8.64958	7.96568	7.53164	8.85141	10.0299	10.7963	8.40439	0.719694	0.419002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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