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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054907 ID=TCONS_00054907|Name=TCONS_00054907|organism=Clytia hemisphaerica|type=transcript|length=302bp
gaGGATTATAGGCTATCCTTTGAAACCACTACTGGCTACTGGctccactt
tcgttttcaacattttttaactttaaggAAACTCGAAGAAACTTTTTAGA
CAAGACAAGTGGATAACACCAAGGACAAGTGCAGAGCAGAAAAGGTGAAA
GACATGCAATATGAGTGAGGACAGAGAACGTCAGGAAAACGAGTTNGAAC
Tggactgtaagggtaggaaattgtgataaaaggccaattttttggtaaaa
ttggcacaaaattggtcaattttggaggaaaaattccacattttcttgga
ga Run BLAST on NCBI transcript from alignment at scaffold_246:108705..112477- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054907 ID=TCONS_00054907|Name=TCONS_00054907|organism=Clytia hemisphaerica|type=transcript|length=3773bp|location=Sequence derived from alignment at scaffold_246:108705..112477- (Clytia hemisphaerica)
GAGGATTATAGGCTATCCTTTGAAACCACTACTGGCTACTGGCTCCACTT
TCGTTTTCAACATTTTTTAACTTTAAGGAAACTCGAAGAAACTTTTTAGA
CAAGACAAGTGGATAACACCAAGGACAAGTGCAGAGCAGAAAAGGTGAAT
CCAAATCAGTTAGGGAGTAGGTAAATCACTTTCCAAAAATTATCTGGCTG
CCTTGGTGTGTTTTTTATCTTTGTGATTCATTTTCCATACTCTTGGGACT
GTCTTGGAATACAAATCATTATTTTTGCAGCAAAATGACATATTTTTCGA
CATCTCTTCATCATCTAAAAACAGTCTAATTCCGACACCTTTTCAGAGGA
AAAATAGGTAGATCGTAATCACTGATTGAAAAAGATGTTTTCCACTCTGA
ACCATACAGTAAGCAAATTAAAAAAGTTTCTATCAGCATTATCCAAGAAG
AGGTCTAAAGATGGGGATGTTGGAATTTGGAATTAGAAAAGGGATGTTGA
CATTATGCCCATAATGGGCATTGGACCAACTTACAACTTACAGTACCGTG
AGTGGTCCTAAATCCGACAGCCCTGCCTAAATCAGATGGGGTCTTTCAAA
GATACAAACTAAAATAAAAACAAACCTTTCGCTGTGATGTGACGCAAATG
AAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACTGAACCAAT
AGACCTTTTCGCCTTTCCATCCGCCATATTGAATTGTATGCAAAAATTAT
GGTGGCTGAATTGCCGTGGTGAAATTTCCTTAGAAAGTATGCAAAACATA
TGCAAAATGAAAGTATAAATATAAAACTTACATGCATAATATAATTAGCA
TTTTATATTAAAGTGTAATTTTGTAAAAGAAAGATTAAATTTGCTTCTTT
TGAAAACTAGAAATAATTATATTCACCCATCTCGTAGAACAAGCACTTCA
AAAGACCATAACATTAGACATAAACTCAAACTGAAAAATCACCTGCGAAG
GTAAAAAATAATCCTTATTTGGCTGACAGTAAATTATGCCAAATGATCAA
ATCGAAACATTGATGATGTGTGACGTCATAATTACTGCTCTTTCAGTTTG
AAAGTTTGATGTGTGTACTCCGTCTTTGTGGAGTTTATAATGGCATGAAA
ACAAAATATGCTATGTCTTTAAGAACAAATTTCTAAAAGGCTTTTGTTAT
TCTGTAAATATTTCTTTTTGGATTGAGAAATTCCATCTTTTATTGTTCTA
ATGATTATAATATTTCTTTATAAGATGCTTTGTTGTCTTTTTAATCTTTG
TGTAAACTTGCATATGTTTTGCATATTTTCCAACTAAATCCAACTACGGC
ATTTTCGTTCCTGTATTATTGCATACAATTCAAGATGGCGAATGGAAAGG
CGAAAAGGTCTATTGAACCAAATAACAATAATTGCTTCTCATACAAAACA
TAATTTCTTATTACAAAATTGTTAACGTTTTAAACACAAATAACAGATTC
AGAATAATTAGAAATAGAGGTAATTATTTTTACAACTCACACTTTTTTGA
TCACATTAATTTACATCTTGGCATTATATAATCTTGTTAAGGGTTCTATT
TCAAGAGCTCTTGCAATAGTTTATTGTTCAACTTGGAGAAGGAATGTTTG
TAAACATATAATTTTTTTTCATAGCAGCTATTTGGGGGGTCGGATTTAGG
CAGGGCTGTCGGATTTAGGACCTTTCACGGTACCTCACAGGCAGTTAAAT
GTTTAAGATAGAAACTTCAATTATTTCTCTTTTCGGCAACTACCGTAAGT
TGGTCTAATATTGACATCCCTCTTCTAATTCCGACTCCCTTCTTTAGAGT
TAGGAATAATATGACAGTATACTAGGACACACTTAGGAAATCAAGGTTTC
GGTTATAGTTATAGTTCAAGTTATAGTCCGTTACCCCCATGTGGACGACA
TGGATTTTCTATAACAATTTATTACTTTTGAAAACATTCAAGATTTTTTA
TGGGAAAACCTTGGATTTTCTTTCCTAATAAGGGTGTCGAAAATAGAGGA
GGGAAAAACTGCAATTTTTTCAATGATAACATGCTGAAACCAGCAGAAAA
GTAAAAAAAATAGATAAATGAAAATTGCTGTTTTCAATAATTTTTGCCGT
TTTTAGAAAGAAAAGTTGATTTTATTATCTAACACGTAGTAATCGACACC
CTTACAATTAGTGGGCCCACTTTGCCTCGTTTATTTTTGTTTTTAACTGG
TTTCTGTCAGAATGCAGACTAGCAAAATCGAGTCATATGTAAACAAACTT
ACAACAGGGGTTCTGTTTTCTCCTAGCTGTGTTTCGGCATCGATGCAGGA
TCTTCTTATTTCATTTTAGAACTTTTCATGTTATTGAGCAATGAAAAATT
GAAAAAATCACTTTTAAAGATCCGACAATCTTTCCCACAATATAATTTTA
CATTATTCAAACACCTTTGACATCTTTGCCCTTATAAAGACAGCGCTTCT
ATCGTTTCTATCTTAAACACCAAACTGACATGCTAGCTCTAAAGCCCTAA
AACAGCATCTAATAGCATGAAAGCCAGAATATGATTCTTCAATGGGAATC
AAAACTATTAAAGTGCACTTGTTGGTATTTTTTTTGGAATGTACCAAATT
GTCTTTTTTGGATATCTCCTGTTTAAGACAACTTTTCTTAATGAAAACTT
TTACACGAGTTTTTCAATTTATTTTGAGAAAAAGAGATAGGATGAAATAT
TCCGATTTTTTTAGTCAGGCTTTGATTGGATGAGTTGAGCAGCTACAATT
TAAGGACAAAATTAGGAGTTAGGATGAAAAATTCCACAGTTAATTACTCC
TCATCTATAAAAGATGCCGTCTCGAAATTGTACTTTTAAATGGTGTACCA
GAAAAGGATGAGATTCCAAAAATATTGATAAAAAACGGGTTGTCCAAAAG
AATGTTTTACTAACTAGTGGATATTACTTTGAGGATAAAAATTGCATGAG
TGTAAATAGTAAAGAGTGTATCTTTCAGAAAGTAGCAATACATTCACTCA
AAGAGTGGCATAGGATGAAATATTCCACTTTTTATGTCACCCAAAATAGA
AAATTACTCCTTAAATGTAAATTTGAAAACTTATGGTATCAACAATGGGT
TTCAGAAGGATTTAGAAAATAAAACCGTTTTAAAAAGTTGTTATAGTAGA
AATCAGAAAATCTTGATTTTCTGGAATATTTCATCCCAAATTACTCCGAA
ACCTATATCATTGGAATCCTCGTTGAAAAATAAGTCATTTCTGAAAATAA
GGTCTACAATCAATGCATTCAAGGTAGTAATATTTTGAGAAAAAAAAGGA
AATTACCACAAAATCTTGTAGCTACACACAATTTGGAAGCACTCTAACTT
AGGTTTGAAGTGTAGAGCTTTAATTCTGAGTTTTACAGCTAGACTTGGAA
GACTAGAACTATGGATATCCATTCAGTAAAGATCTCTCCACAAGATAGCT
CATTTAATTGTGGGTTGAGTACATTCTATAACTGCGATAATGTAGAAATG
TCTAAAGAATTATTGCTTTTGATTTTATTATTTCTTTAATTTTGTTCTTT
GTTTTATTCATGCAGGTGAAAGACATGCAATATGAGTGAGGACAGAGAAC
GTCAGGAAAACGAGTTNGAACTGGACTGTAAGGGTAGGAAATTGTGATAA
AAGGCCAATTTTTTGGTAAAATTGGCACAAAATTGGTCAATTTTGGAGGA
AAAATTCCACATTTTCTTGGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054907-exon-scaffold_246-1575043694:112334..112477 | TCONS_00054907-exon-scaffold_246-1575043694:112334..112477 | Clytia hemisphaerica | exon |
| TCONS_00054907-exon-scaffold_246-1575043694:108705..108862 | TCONS_00054907-exon-scaffold_246-1575043694:108705..108862 | Clytia hemisphaerica | exon |
| TCONS_00054907-exon-scaffold_246-1510915933:112334..112477 | TCONS_00054907-exon-scaffold_246-1510915933:112334..112477 | Clytia hemisphaerica | exon |
| TCONS_00054907-exon-scaffold_246-1510915933:108705..108862 | TCONS_00054907-exon-scaffold_246-1510915933:108705..108862 | Clytia hemisphaerica | exon |
| TCONS_00054907-exon-scaffold_246-1491911889:112334..112477 | TCONS_00054907-exon-scaffold_246-1491911889:112334..112477 | Clytia hemisphaerica | exon |
| TCONS_00054907-exon-scaffold_246-1491911889:108705..108862 | TCONS_00054907-exon-scaffold_246-1491911889:108705..108862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:108705..112477 - |
Blast
The following BLAST results are available for this feature:
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