TCONS_00054904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054904
Unique NameTCONS_00054904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054904 ID=TCONS_00054904|Name=TCONS_00054904|organism=Clytia hemisphaerica|type=transcript|length=2405bp
AGAGCGTAACTTTGAGTTATTTGATCactattttggaaaaatacCAACTT
TGTCAAGctGTTGATCTGGTTGAATTCAAAGAGGCAGTCAACTTGCAACA
TCACATGGTACAAAAAGCATTTGATTTCAGAGATAATCCACCAGAGAATT
TAGNGATCTGGTTGAATTCAAAGAGGCAGTCAACTTGCAACATCACATGG
TACAAAAAGCATTTGATTTCAGAGATAATCCACCAGAGAATTTAGAAACT
CCTCTTCACCAAGAAGAATATTTGCGTTCAATGCAATGTCAGATCCTTAT
CGAAAACGCTGGTAAATGTACACAGTGTCATAAAATGGAAATCAAACTTC
GTAGTCAACTTAACACcaagaaaaattctttaaaatcaCCGTTGCATCCA
AATGCACCTTTGTCATTTGTTTCTCCAGACAAACTCGTTGAAACTGTCAA
ACTTCAAAGAGTTGAAAACAAAGCTTTaatgaaagaaacaaaaatactca
gaGAACGATTAGAAGCAGCAATTGAAAAAAACTCTATGGATGTCACTGAT
GATTTGAACAATGACTTGATAGATATTTTTAAAGGCATCCCCGAAGATAA
AGTGCCACCATTTATGCGTCTTTTCTGGGAGGAGCAGCAAAAGTACATTC
GAGCAAAAACTAAATCACAGATTCGTTACCACCCTGCCATCATTAAGTTT
TGTCTCTCAATCGCATCTAAATCACCAGCTGCCTATGAGCAACTCCGCTT
AAATGACAAGGATGGGACAGGTGTCATGGTGCTTCCAAGTCAAAGAACTT
TGAGGGATTACAGAAATTATAGCCGAAGCAAGGATTCAATCCTGAAGTTA
TTCAAGACTTGATAGATAGGACCAAAGAATTCAGTGATCGAGAGAGATAT
GTTAATATTCTGATAGATGAGATGAAAATACAAGAGGATTTGGTCTGGAA
CAAACATACTGGAGAGTTGATTGGCTTTATTGATCTTGGTGATGATGAGC
TCAATGAGGGTCTGCTTGAAGACAAAACTAAACTAGCAACACACATCATG
GTATTCATGGCCAAGAGCCTTATGAACCCCCTTTCGTTTGCCTTTGCTAA
CTTTGCTACTGATGGAGCATCCAGTGAACAAATTTTCTCTTTATTTTGGA
AGGCAGTGAGTATCTTGGAGATCACATGTAACCTAAAAGTTGTTTCCACT
GTTGCTGATGGGGCTTCAATTAACAGAAAATTCATGCAGATGAATAGGGA
TTCAGACGGTAAAAATGGTTCAGAGTTGATTTACAAGGTCAAGAACATGT
ATTCAGAAGAAGAACGTTACATATTCTTTTTTGCCGATGTACCTCATCTC
ATCAAGACAGCACGAAACTGCCTTTGGTCATCAGGCTCTGATTTTTCTCC
AAGATTCATGTGGAACAATGGTTCTTACTTGCTTTGGCAGCACATTAAAA
CTATGTTTTATGAAGACATGGACAATGGATTGAAGTTAATGCCAAAACTT
ACCACAGACCACATTCTTCTCAACTCCTACTCTAAAATGAGAGTTTACTT
AGCTGCTGAAATTCTCAGTAATACAGTTGGAAACATGTTGTTGAAATTCG
GTCCAGAAGAGGCTAAAGGAACTGCTGGATTCTGCTTACAAATGGATCAG
TTTTTTGATTGTTTTAACGTGCGAAATACCAAAGAACACAAAAAGACTGG
AAAACCTTTTTTAGCTCCATATACCACAGTTGATCCTAAAAAGGATGAAC
GGTTTAGCTTTCTTGACAAATTTTTGAAATATCTAGATGATTGGAAAAAG
AGTACAATGGAACGCCCTGGGGAATTTTCCCAAACCAACCGAAACAATAT
GTTTTTATCTTTACCAACATATAATGGTATCAAAATTAGCATCAGTTCCC
TCAAAGAAATCATACCATTTTTACTTGACCAATGTGGATTTGACTATGTT
CTAACAGAAAAGTTTTGCCAGGATGACATTGAAAATTACTTTGGGAAACA
GAGGGCAATTGGTCGTTTTAAGGACAATCCAACTGCAAAAGATTCTATCT
ACAATGACAATATAATAAAATCACAGTTTGACACACGACCGATTGCTGGT
AATGTTAGAAAGGCTGAGTTTGATCCCAAAGATATACCAGACACTccaat
caaaaaacgtaaatgTTAAAAATGCTGTATGTAGTACAGTATCGAAGATA
AGAGATATTTAATTAAGACTTTGGTTATAGAGGATCTTAATAGATAAAAT
CTactactcttttgtgcttaattgtaggggtaGGTGGGACAAGTGGGGAG
GGGGTTAGTGGGTACTCCAggtgaaaatcaacaaaatggggGGATAATAA
ATCATataaattttttccatattttcatCCCCAAAATCACTTTATATTGC
AATGA
Run BLAST on NCBI

transcript from alignment at scaffold_246:54837..59211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054904 ID=TCONS_00054904|Name=TCONS_00054904|organism=Clytia hemisphaerica|type=transcript|length=4375bp|location=Sequence derived from alignment at scaffold_246:54837..59211- (Clytia hemisphaerica)
AGAGCGTAACTTTGAGTTATTTGATCACTATTTTGGAAAAATACCAACTT
TGTCAAGGTAAATAAATCAGCATTTTTTGTTTTGTATAAATTTGCTCTCA
TCAGCCAACAGTGTTTACATTTTTTTTGTAAAATCAGAAATGAACATTCT
GATGATAGTTATTTTGAATCATCTTTTTAATTTGAGGTACAGTTTTATTT
TACCCTCCAATGGCTTACATTTGCTGTCAATTTGAACAGTAATATTTTAT
TTTGTATTGCATATGTCGGATTTAGAACCTGGGGGTCGATATTAGAGCAT
CTTACGGTATAGACAATTCTATGATGTTGAGGTGATGTAAGTTTTCCTCA
GTCATTTTTTACTCATGTCACATTGACTTCATTCACTGGGACGTACACGT
GCCAAATTGGTTAATGCAAATATTTTTTTTATTTTTTTTCAATAGCTGTT
GATCTGGTTGAATTCAAAGAGGCAGTCAACTTGCAACATCACATGGTACA
AAAAGCATTTGATTTCAGAGATAATCCACCAGAGAATTTAGNGATCTGGT
TGAATTCAAAGAGGCAGTCAACTTGCAACATCACATGGTACAAAAAGCAT
TTGATTTCAGAGATAATCCACCAGAGAATTTAGAAACTCCTCTTCACCAA
GAAGAATATTTGCGTTCAATGCAATGTCAGATCCTTATCGAAAACGCTGG
TAAATGTACACAGTGTCATAAAATGGAAATCAAACTTCGTAGTCAACTTA
ACACCAAGAAAAATTCTTTAAAATCACCGTTGCATCCAAATGCACCTTTG
TCATTTGTTTCTCCAGACAAACTCGTTGAAACTGTCAAACTTCAAAGAGT
TGAAAACAAAGCTTTAATGAAAGAAACAAAAATACTCAGAGAACGATTAG
AAGCAGCAATTGAAAAAAACTCTATGGATGTCACTGATGATTTGAACAAT
GACTTGATAGATATTTTTAAAGGCATCCCCGAAGATAAAGTGCCACCATT
TATGCGTCTTTTCTGGGAGGAGCAGCAAAAGTACATTCGAGCAAAAACTA
AATCACAGATTCGTTACCACCCTGCCATCATTAAGTTTTGTCTCTCAATC
GCATCTAAATCACCAGCTGCCTATGAGCAACTCCGCTTAAATGACAAGGA
TGGGACAGGTGTCATGGTGCTTCCAAGTCAAAGAACTTTGAGGGATTACA
GAAATTATAGCCGAAGCAAGGTATGCTCTTCTTTTCTTTCACCTTTTTAA
GAAATCCTCTTGTTTTGCAAATTTCGGTAAAAGCTGGAATAATTTTTTAA
TTTTTTAATTTTCTTTTGAAGACTTTTGATATGAAAATGCAGTGATAAAT
CTGAATCCAGAATTTGTTTTTTCAAAATACGATGATGACAGACTTGCTTT
TGAATCATCCATGTCTATGCAGTGAAGGGGGAAGAGGGTCTATTGTTTTA
AATAACTTACTATTATTCTTTGTGTACAAGGGGGGGGGGTCAATTATTTG
GAAAATTTTTGTGTTGCTATGTGGATGATCCCTTTAAGAAAAGGCATATG
AAAATATCTTTAAAATTTGGATATGACGGACAGCATAGTTTATCAAGACA
TGTTTAAAAATTTTGAATTTTTCAAAATCAATTAAGATTTTTAACTTTTG
TTTTATAGGATTCAATCCTGAAGTTATTCAAGACTTGATAGATAGGACCA
AAGAATTCAGTGATCGAGAGAGATATGTTAATATTCTGATAGATGAGATG
AAAATACAAGAGGATTTGGTCTGGAACAAACATACTGGAGAGTTGATTGG
CTTTATTGATCTTGGTGATGATGAGCTCAATGAGGGTCTGCTTGAAGACA
AAACTAAACTAGCAACACACATCATGGTATTCATGGCCAAGAGCCTTATG
AACCCCCTTTCGTTTGCCTTTGCTAACTTTGCTACTGATGGAGCATCCAG
TGAACAAATTTTCTCTTTATTTTGGAAGGCAGTGAGTATCTTGGAGATCA
CATGTAACCTAAAAGTTGTTTCCACTGTTGCTGATGGGGCTTCAATTAAC
AGAAAATTCATGCAGATGAATAGGGTAAGATATTTAAAGTTAAAAAGTAG
CACACTTTCTACCCTGATGATGGGTGGACTTTTAGTGAGGATTTTTAATT
TTTTTTTAGAAAAATTAGATTTTGAATTTTTTTAAAGAATTCAAGTTTTT
CTTATTATAAATAAAAGAGCCTAGAAATTTATTGGAAAAAAAGAATATGA
AAGTGGGAAATCTTTTAACATTATCTCCTACTTTTGTGTCTATTTTTTTA
AGAGAGTACTTATGAGCATAATTAGCCAGTAATTGAGGCATTTTTGAAAT
AAGAATTATTTTTAGCCAGGATTTGATCGTTACTCAATTCTGATATATTG
ATGGTGAGAGAGTCAAGTATCACCTACACACTTGTATCTTAAAAGGTTAT
GAAGTGATATGCAATATTAACAAGCATTCAGTTGAAAAATGTCTGTTTAG
GTATTCAACCCTCAAAAAATATTTAGTCATTTGTGTACTAGAGGTTAACT
ACCAAGTGTCGGATAATTACCCTTTCGAGATTTATCAGTCATTGAAATTA
ATGCAAATTGGTTGGATTTATTGAATTGTCTTTCAATTTGCCTATGAACT
TTTGAAAGCTTTGGAAAATTTATATTTTCCAGGTTGCAAATTCATAAAGT
TATATTTCAAAAATCACCATGTAAAATACATGTAATTTACATGGTGATTT
TTTTAATATAACTTTTAATACCGTAGTAATATAATATAACTGAAACTTTT
AATTCATCTATTCAGGATTCAGACGGTAAAAATGGTTCAGAGTTGATTTA
CAAGGTCAAGAACATGTATTCAGAAGAAGAACGTTACATATTCTTTTTTG
CCGATGTACCTCATCTCATCAAGACAGCACGAAACTGCCTTTGGTCATCA
GGCTCTGATTTTTCTCCAAGATTCATGTGGAACAATGGTAATTTAAGTTT
TTATGTCATTAAGTTATTGGGGGATTTTTGCAACATCACATGGTGCAAAG
TTATACGGGGATTCTTTTTGGAAAAAGGAAAGGTATTCAATAAGGGATGG
GTAAATTTTAAAAGGGAGGGGGTACAGATCTCTCTGCACACTATGAGGCT
AACCTGGGTAAACCTGGATTTTTTCTTGCCAAGTGAACTAACAATCTAAT
CTAGTTGCTTGGTCTTTGCAAACCAACTTGGACAGTAGGAATTGTCCTTT
AGAAATTGAAAAACTAAAAGTGTTAGTTATCCCTTACTCTTGATCTTTCC
CTGATCAAATTGATGGTTCTGGAATACTGGCATAGTCAAACATTTGCTTT
GGTACGTTTATATTTTTACCTCTTTTAACTTTTCTTTCAGGTTCTTACTT
GCTTTGGCAGCACATTAAAACTATGTTTTATGAAGACATGGACAATGGAT
TGAAGTTAATGCCAAAACTTACCACAGACCACATTCTTCTCAACTCCTAC
TCTAAAATGAGAGTTTACTTAGCTGCTGAAATTCTCAGTAATACAGTTGG
AAACATGTTGTTGAAATTCGGTCCAGAAGAGGCTAAAGGAACTGCTGGAT
TCTGCTTACAAATGGATCAGTTTTTTGATTGTTTTAACGTGCGAAATACC
AAAGAACACAAAAAGACTGGAAAACCTTTTTTAGCTCCATATACCACAGT
TGATCCTAAAAAGGATGAACGGTTTAGCTTTCTTGACAAATTTTTGAAAT
ATCTAGATGATTGGAAAAAGAGTACAATGGAACGCCCTGGGGAATTTTCC
CAAACCAACCGAAACAATATGTTTTTATCTTTACCAACATATAATGGTAT
CAAAATTAGCATCAGTTCCCTCAAAGAAATCATACCATTTTTACTTGACC
AATGTGGATTTGACTATGTTCTAACAGAAAAGTTTTGCCAGGATGACATT
GAAAATTACTTTGGGAAACAGAGGGCAATTGGTCGTTTTAAGGACAATCC
AACTGCAAAAGATTCTATCTACAATGACAATATAATAAAATCACAGTTTG
ACACACGACCGATTGCTGGTAATGTTAGAAAGGCTGAGTTTGATCCCAAA
GATATACCAGACACTCCAATCAAAAAACGTAAATGTTAAAAATGCTGTAT
GTAGTACAGTATCGAAGATAAGAGATATTTAATTAAGACTTTGGTTATAG
AGGATCTTAATAGATAAAATCTACTACTCTTTTGTGCTTAATTGTAGGGG
TAGGTGGGACAAGTGGGGAGGGGGTTAGTGGGTACTCCAGGTGAAAATCA
ACAAAATGGGGGGATAATAAATCATATAAATTTTTTCCATATTTTCATCC
CCAAAATCACTTTATATTGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034598XLOC_034598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054904-exon-scaffold_246-1575043694:59155..59211TCONS_00054904-exon-scaffold_246-1575043694:59155..59211Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1575043694:57992..58766TCONS_00054904-exon-scaffold_246-1575043694:57992..58766Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1575043694:57138..57553TCONS_00054904-exon-scaffold_246-1575043694:57138..57553Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1575043694:56225..56396TCONS_00054904-exon-scaffold_246-1575043694:56225..56396Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1575043694:54837..55821TCONS_00054904-exon-scaffold_246-1575043694:54837..55821Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1510915933:59155..59211TCONS_00054904-exon-scaffold_246-1510915933:59155..59211Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1510915933:57992..58766TCONS_00054904-exon-scaffold_246-1510915933:57992..58766Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1510915933:57138..57553TCONS_00054904-exon-scaffold_246-1510915933:57138..57553Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1510915933:56225..56396TCONS_00054904-exon-scaffold_246-1510915933:56225..56396Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1510915933:54837..55821TCONS_00054904-exon-scaffold_246-1510915933:54837..55821Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1491911889:59155..59211TCONS_00054904-exon-scaffold_246-1491911889:59155..59211Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1491911889:57992..58766TCONS_00054904-exon-scaffold_246-1491911889:57992..58766Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1491911889:57138..57553TCONS_00054904-exon-scaffold_246-1491911889:57138..57553Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1491911889:56225..56396TCONS_00054904-exon-scaffold_246-1491911889:56225..56396Clytia hemisphaericaexon
TCONS_00054904-exon-scaffold_246-1491911889:54837..55821TCONS_00054904-exon-scaffold_246-1491911889:54837..55821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:54837..59211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124629	0.000788856	0	0.0409053	0.58513	0.514026	0.477724	0.400015	0.235328	0	4.65237e-07	0.287434	0.0706073	0.0828907	0.231963	0.0182832	0.0225673	0.257495	0.223259	0.177144	0.711833	0.633463	0.261978	0.358467	2.57326e-10	0.709892	0.189879	0.249928	2.49143e-07	0.0704675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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