TCONS_00054902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054902
Unique NameTCONS_00054902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054902 ID=TCONS_00054902|Name=TCONS_00054902|organism=Clytia hemisphaerica|type=transcript|length=814bp
GAGAAAACTAatagtagaaattttttgaatctcATCTGTGGAAACTATGA
TGCATACAGACAAAGTGAAATGATTTATTGCACAAAAGAAGGTCAAGATt
gtttcttTGGTGCCACCATCAAGTGCGAAGAAGCCAAAGTTATAATGTCA
CCCACCCAAAGTAACAAACACGAAAAAGACTGCTCTGCCAAGCTCAAATA
AATTTACCCTTCCACCCGAAGCATTACAgaagaaatctttatttattgTT
CCAATTTCAACTGCTACAACTAAGCAAGGAGATTCAATTTTTGCTCTCTA
TCATCAACTGAATATTGTACGTACAAATCAGCCTGCTGAGGAGTAAGAAC
CTGATGTCACACAACCGCTGAACTTCAAACCGTTCTCGAAAATTATATAA
AGCTCTATCTTCTGGACAACCGCTACTGCTTGAAGTTCTCAATCCTTTAC
TGAAAAATGGTTTATTGACTGGTCATCCTTCAACTTCTTCGACATTATAA
TGTTATAACGTTCCAGAAAGTTTGGTTTGATTCTAAAGAGACATCTCCCT
TCCTAAAAAGGTGATATTGATACCTTGGAATGTAAAGAAGCAGAAGAAGG
AGCACCTGCCAGATATGAAACTCGAGACCTGGtttgcacacttttttata
agagtgttTTTATTGGTAATGCTAATGGTGAAGCATTCATATAAAAATGC
AGCTAAATAAGGATGACAGACTGTATACACTATGCTCTtacagattattt
ttttgtttataaataaagcaGTAATTTTTGATTGGTACCTATGTAAACTA
ggaatgaaattatg
Run BLAST on NCBI

transcript from alignment at scaffold_246:25222..32390-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054902 ID=TCONS_00054902|Name=TCONS_00054902|organism=Clytia hemisphaerica|type=transcript|length=7169bp|location=Sequence derived from alignment at scaffold_246:25222..32390- (Clytia hemisphaerica)
GAGAAAACTAATAGTAGAAATTTTTTGAATCTCATCTGTGGAAACTATGA
TGCATACAGACAAAGTGAAATGATTTATTGCACAAAAGAAGGTCAAGATG
TAAATGTAATAAAATAATCTTTGCTGACTTTTTTATCAAACCAAAACAAA
CAGAAGTTTCTTTCTGGTTCTTTTGTTTTTCTTCTCTTTTTTATCTTGTT
TTTTTATATGCTCTCAAAGTCCAAATACATTCAAAGTAACCATTACAATG
AACAGCATGTAACCATCCCTGGTAAATCAACTCGGGTTCAATTGCGGGTG
TATCAGGTTCACCCGACCTTACCTGAAATTGCTATTTTTGGAAGTCCGGT
TCGTTTCCAGTAAATCGGGTTAACCCGAATTCACGGGTTGTTCAGGTTGT
TGTTTTTTCGAGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGCGTCCGCAAAAATATTTT
TTTCACGATCGAGAATTTAGAGCGCGCTTTTTTTCTTTCTGCGAGAGAGT
TCAAGATGGAAGGTCACGTCACTTCGTACTTTGAATTTTTACTCTGACAA
CTGGATGAAGAAAATCGACTTCAATTTTCCAAAGGCAATGACTATGACTG
GATGAAGAAAAAAAGGTATGCTTTTATCATTCTTTATTTTCTTAATAAAT
TTGACAGGGCAGGGGAAGTTATGGTTTGATTCATGGTTCTTCTGATCAAT
TTCTTGTCTCTTTTCTCAGCCTCAGAGTGTTCTTTGAACTTAAGTGCCAA
AAATATATCTCAGTTACATTATTTATCTTTGCAAGTAAGTCTATAAAGTA
ATCCCAATAAATTATTTCCTGGAAACTTTTAACCTTTATTAGAGCTAGAA
TCTGAGAGTGTTTGTTTGAGGTGTATCTGGGTGGAGACAAAACGCAGAAC
GGCGGAATGCCGGAATGCCGGAACCGGAATAGGTGTTCCGGCCGGAATAG
CTATTCCGTGGAATTTGATTTTTTTTAATTTTTTTTATTTTTTGTATTAG
CTATTCCGCGGAATATGATTTTTTATTATAATAATAATCTTTCTCTTTTA
TCACCCCTGAGGGTATATCTATGTACATAATCATCCATAATCACCCATTA
CCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGGCTACCTCATTGGCTGTTTTTCGTATATAAAGGAATGCACTCGT
GCACTCGCTTGTGAAGTCATTCTAATACACCTTTCCCGGGGTGTTGTTTG
GGATTTTAAGTTTGAGTGTTTCCCTTGGATATAACTAAGATAGAACTAGA
TTAATTATACCTCACAGAAAATTTGACCGGCTAAAAACGCCGTACGACCC
GGCAATCGTCCGTACGGGGACGTCCTGCAGCGTACCTTGCGCAGCACGTA
GCCCGGCGACCGGTAACAGTGGAGTGATGAAATTTGGCATGCTCCCCCCC
TTCGATATGCTTGACGTCTCCAGAAAGTTTCAAGTCGTGAGACCAACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGCACCCAAAAAAACATGAAACATCAAAA
CCTGGATAAAAATTTTAAAGGTGACTTTGACCCGCTTCGATCTGGGGATC
CCTAGTGCGTGAAACCAACGCTTTAAACCACTGGACCAAGTTCTAGCCGT
GCTTAACAGAAATTTTTCAGCGATGTCATACCTTCGTTAGCTTGACTTGG
CCCAGATGGAAAAAAATATATAATCATATTCCGCGGAATACAAAATATAA
AAAAAAAATCATTATTCCGCGGAATAGCTATTCCGGCCGGAACAGCTATT
CCGGTTCTGGCATTCCGTCGTTCCGCCGTTCAGCGTTTTGTCTATACCCG
GTGTATCTCACTAGAGCACCTTCTACTTCAACAACAACAGTCGGAATCCA
GCGTGGAAATTTGTCTACTATGACTGCTTTTTTGTCCGAACACAGTTGCA
TGATTTGTCATATTTTGTCTGAAGGCCAACCAAAATAGTGCATCTCAGAA
ATCAACAATTCTTCACTTAGTTTTTTTTTACAATCAGCTAAACTTTTACC
AATTGGTTTACCAATTTTACCAACCGGCAACAAATAATATTCTCAACTTC
AGTTGAGCTAGAATCTGAGAATGTCTGTCAGTATGTCTGTGCAGTCTGTC
TGTCTGTCACCGCTAAACTTTGTTTGGGGCAGCAGGCAGGCTGGAGTCTT
CAAAAATGGTCGGATTCGGCTGAAATTTTGCACACTTGTTCCTTGGGTGA
ATATCTTGGAGCATATTTTTCATTTTTTCAAAATATTGAGTCTTAGGGGT
GTGGTCACGTGTTTTAGTCTCAAAACGAGGCTAAAAACTTTGGGACAGGT
TGGAAACTTCAAAAATATTCCGATTCAGCTGAAATTATGCACACTTGTTC
CTTGGGTGAATATCTGGGAACATTTTTTTTATTTTTTCAAAATTTCGATT
CTTAGGGGCGTGGTCATGACTTTTGGCCTTAAAACGAGGCTAAAAACTCT
GGGACAGGTTGGAGGCTTCAAAAACGGTCCGATTTAGCTGAAATTTTGCA
CACTTGTTCCTTGGGTGAATATCTGGGAATATTTTTTTCATTTTTTCAAA
ATTTCTATTCTTAGGGGCGTGGTCATGACTTTTGGCCTTAAAACGAGGCC
AAAAACTCTGGGACAGGTTGGAGGCTTCAAAAATGGTCCCATTTAGCTGA
AATTTTGCTTTTGCCCACTTGTTCCTTGGGTGAATATCTGGGACCTTTTT
TTCATATTTTCAATATGTTGACTCTTAGGGGTGTGGTAACAAGTTTCAGC
CTCAAAACGAAGCTCAAAACTCTGGGGCAGGCTTGAGACTTCAAAAATAT
TCCGATTCAGCTGAAATTTTGCACACTTGTTCTTGGGTTAATATCTGGGG
TATTTTTCATTTTTTTTAACTTTGATTCAATAGGGTTGTGGTCATGACTT
TTACCCTCAAAACAAGGCTGAAAACTTTAAGGCAAGCTCCAGACTTCAAA
AATGGTCCGATTTTAGCTGAGTAACAGCAAAATTCTTTGAAACTTCACCA
TTTCCATTTTTTACACTGGCACAATAAAAAAATCTTTCAAGAGATTCGTA
AAGTACACTATGAAATGCTTCGATTGCAATTCTACCGATTTTGTCTTTTA
CATAACTTTTTTTATTGCACTCATTAGACAGGTAACATTTTTTTTGGGCC
GGCCTGATAACTAGATTTTCCTTACTTACTATGCTTTAGAAACGTCTGAA
ATTAGGTTGTGGTGTGTCATTCAGGTAGTTAGATAATTTTTTTTACTTAT
ATAGGTTCATAAGGGAATAACTGATATTTTTTTGATGGGTGTAGCTCAAG
AAAGAGAATCCAATAAAACATGCATACCCTGCTACCGTCACTCAGGAAAG
AACAATATAAAATGAAAAATATTTTTTGATATTCATTCTTTTTTAACAGG
TTCAACCCCAACAAGAGCAAAAATGCACAAAGAATTCAAAATTGACAATT
CACTCAGACTACACCGCAAGTCAAGTAAGTACCGAATGTCTGTTAAACTA
TTCAGATGTTGAAAGATGCCTGTTAAACAGATTGCCAAACTGTAAAAATC
ACAAATATTTGGTCTGTATAGCTCAGTACATTGAAGGCTGTGAACAAGAA
TTTGTAGCCTTCTGTAAATTCTTAAAAAAGTCATTGCTTGAGATTTAAAT
GGAGTTTGTGGTAACAATTCAGTAATAAGAAATTCTAATATTTTTTTAGA
CATGGCTCTTCCAACCATAGTACCAACTGAATCAAAATTTGAAAGCTGAT
GAAAATTCTTCCCCATTTAACAAGCAAGTGTTATTTTTCAATGCGAAGAT
ATTTGGGCGGATGAACAGGTCATGAACATATCATGAACTATATCATGATA
TATTCCAGTATACTATTTTTTAGGGAAGTCATTTCAAGTTCTGAGGGTTT
GAAATTTTTGTTGAAGGACTCCCTAGGGCACTCAGGCAAGATGGGGATGT
GTGGCTCACCAGAGTCCCTTTTATAAGTAAAGAAATACTTTGGATATTTT
AAAACTTACTAAATTTTTGAAATCAGCTAAAAATTGTTTAGGATCCATTT
TTGAACACCAGTGACACGTCAGTGACAGTACCCCTCCCCAGGGAAATTCA
AACATTAAACGTATACAATAATGGACAACGCTTCAAAACCTTACTGAATT
TCTATGACATCATTATTTATCATTAATTTTTAAGGTGAAGAAAGTCAATG
GAGTTTTGTGACAGCAACAAATTCGGTTGACTCAACTCAAATTTGCGATG
TTGTTTTCACATTTCTTTTGCAATATGAATCTTCAGTCTCAAACACGTTC
CCCGTGTCTATATTAGATGGTGACAGCTTATTGTATAATGTGTTCCAAAC
AGTTGTTATTCCTGGTTATTTATGTCAAATGAGTGCAACTGTAATCTGCT
TTTGAACTGGAACCTCTTATACATTCAATTGGACATTGCATGTACCAAAA
ATCAATTAACGAACAATCAAAGGAGTTTCATGACAGCGACAAATTCGGTT
AACTCAACTCAAATTTGCGATGTTGTTTTCACATTTCTTTTGCAATATGA
ATCTTCAGTGTCAAACACGTTCCCTGTGTCTATATTAGATGGTGACAGCT
TCTTGTATAATGTGTACCAAACAGTTGTTATTCCTGGTTATTCATGTCAA
ATGAGTGCAACTGTAATCTGCTTTTGAACTGGAACCTCTTATACATTCAA
AGGGACATTGCATGTATCAAAAATCAATTAACCAACAATCATGTAAAAGT
AATTTTTTTATTCTATGAAATGTGTTAAAGTAGACAAATTATTTACAATT
TATGAATTTAGAATTTATATCAATTTACTTTCATTTTATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTGAGAACCCTAGTTACCCGGGTA
AGACGGGTTTCTATTTTTGGAATTTTTCGACCCGAAATACTCGAGTAAAT
TGCTCATCGGGATTTTCGGGTATACCTCACATCAATTACTTGAGTATTAC
CCTAGTATTACCCGAGTTAGTTTACCAGGGATATTTCTTTTTCATGTTTT
TCAGTGTTTCTTTGGTGCCACCATCAAGTGCGAAGAAGCCAAAGTTATAA
TGTCACCCACCCAAAGTAACAAACACGAAAAAGACTGCTCTGCCAAGCTC
AAATAAATTTACCCTTCCACCCGAAGCATTACAGAAGAAATCTTTATTTA
TTGTTCCAATTTCAACTGCTACAACTAAGCAAGGAGATTCAATTTTTGCT
CTCTATCATCAACTGAATATTGTACGTACAAATCAGCCTGCTGAGGAGTA
AGAACCTGATGTCACACAACCGCTGAACTTCAAACCGTTCTCGAAAATTA
TATAAAGCTCTATCTTCTGGACAACCGCTACTGCTTGAAGTTCTCAATCC
TTTACTGAAAAATGGTTTATTGACTGGTCATCCTTCAACTTCTTCGACAT
TATAATGTTATAACGTTCCAGAAAGTTTGGTTTGATTCTAAAGAGACATC
TCCCTTCCTAAAAAGGTGATATTGATACCTTGGAATGTAAAGAAGCAGAA
GAAGGAGCACCTGCCAGATATGAAACTCGAGACCTGGTTTGCACACTTTT
TTATAAGAGTGTTTTTATTGGTAATGCTAATGGTGAAGCATTCATATAAA
AATGCAGCTAAATAAGGATGACAGACTGTATACACTATGCTCTTACAGAT
TATTTTTTTGTTTATAAATAAAGCAGTAATTTTTGATTGGTACCTATGTA
AACTAGGAATGAAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034596XLOC_034596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054902-exon-scaffold_246-1575043694:32292..32390TCONS_00054902-exon-scaffold_246-1575043694:32292..32390Clytia hemisphaericaexon
TCONS_00054902-exon-scaffold_246-1575043694:25222..25936TCONS_00054902-exon-scaffold_246-1575043694:25222..25936Clytia hemisphaericaexon
TCONS_00054902-exon-scaffold_246-1510915933:32292..32390TCONS_00054902-exon-scaffold_246-1510915933:32292..32390Clytia hemisphaericaexon
TCONS_00054902-exon-scaffold_246-1510915933:25222..25936TCONS_00054902-exon-scaffold_246-1510915933:25222..25936Clytia hemisphaericaexon
TCONS_00054902-exon-scaffold_246-1491911889:32292..32390TCONS_00054902-exon-scaffold_246-1491911889:32292..32390Clytia hemisphaericaexon
TCONS_00054902-exon-scaffold_246-1491911889:25222..25936TCONS_00054902-exon-scaffold_246-1491911889:25222..25936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:25222..32390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84787	0.749323	1.10587	0.614609	2.88529	2.00915	3.16074	2.46967	2.51409	2.57212	2.47786	2.78273	5.86355	4.23276	2.23146	2.34107	1.31576	3.50189	6.57034	8.97063	6.58712	6.75829	3.93215	4.48795	2.63307	4.04969	8.74342	11.2456	16.3868	12.3552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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