TCONS_00054888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054888
Unique NameTCONS_00054888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054888 ID=TCONS_00054888|Name=TCONS_00054888|organism=Clytia hemisphaerica|type=transcript|length=531bp
AACTTCCGCTGGCGGAAAATAATTTAAACCCAAAATTCGGGATTTAATGT
ACCCAAGAGTTCGGGATATAATACGCTCTTTCcgattttttcttattatt
gatTATCAATATTTTCTATTGATTATTGATTGTAGACTAAATATCTGATC
ACTATAGACTAAAAAATAGCATTCTTTTGCAATAAAATAACTGTCCACAA
ATAACCGCGGCGGAAAATTTAAACCTGAAAATCGGGATTTAAAGTACCTA
ACATTCGGGATATGATCTAACCTTTTTAAAAGCATAATCCTAGACTAAAA
AAAGTCTCAAATCTAGACTACAACTAGAACTACTTTTTCAACAGATACGG
ATTCGCGCCATTTTCGCGCCATTCTCACAAAGCCCGTATGTAAGCTCAAA
GTAGAACCGTGGGATAGcgcaatttcaatttttttctaatttcacGGCGA
AATCATCGTTTTAAGTCATTTAAAGACAGGAATGGTGTCAGACTATTCCA
GAAAGCATTTTCCGacaaaaaaattcaggaa
Run BLAST on NCBI

transcript from alignment at scaffold_245:900117..900647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054888 ID=TCONS_00054888|Name=TCONS_00054888|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_245:900117..900647 (Clytia hemisphaerica)
ttcctgaatttttttgtCGGAAAATGCTTTCTGGAATAGTCTGACACCAT
TCCTGTCTTTAAATGACTTAAAACGATGATTTCGCCgtgaaattagaaaa
aaattgaaattgcgCTATCCCACGGTTCTACTTTGAGCTTACATACGGGC
TTTGTGAGAATGGCGCGAAAATGGCGCGAATCCGTATCTGTTGAAAAAGT
AGTTCTAGTTGTAGTCTAGATTTGAGACTTTTTTTAGTCTAGGATTATGC
TTTTAAAAAGGTTAGATCATATCCCGAATGTTAGGTACTTTAAATCCCGA
TTTTCAGGTTTAAATTTTCCGCCGCGGTTATTTGTGGACAGTTATTTTAT
TGCAAAAGAATGCTATTTTTTAGTCTATAGTGATCAGATATTTAGTCTAC
AATCAATAATCAATAGAAAATATTGATAatcaataataagaaaaaatcgG
AAAGAGCGTATTATATCCCGAACTCTTGGGTACATTAAATCCCGAATTTT
GGGTTTAAATTATTTTCCGCCAGCGGAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034586XLOC_034586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054888-exon-scaffold_245-1491911889:900117..900647TCONS_00054888-exon-scaffold_245-1491911889:900117..900647Clytia hemisphaericaexon
TCONS_00054888-exon-scaffold_245-1510915933:900117..900647TCONS_00054888-exon-scaffold_245-1510915933:900117..900647Clytia hemisphaericaexon
TCONS_00054888-exon-scaffold_245-1575043694:900117..900647TCONS_00054888-exon-scaffold_245-1575043694:900117..900647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:900117..900647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110179	0.214884	0	0	0.148583	0.117412	0.141653	0.132614	0	0.23001	0.669759	0	0.293107	0	0	0.0671402	0	0.0847763	0	0.367683	0	0	0	0	1.77442	3.80071	0.151078	0.161234	0.489162	0.124595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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