TCONS_00054886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054886
Unique NameTCONS_00054886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054886 ID=TCONS_00054886|Name=TCONS_00054886|organism=Clytia hemisphaerica|type=transcript|length=647bp
ccgcgcaactttggtaggatttgttggcttcaaatcctaccaaagagatt
gacctctagcccttcgggcttgaaactcaatggtggagcacccccgtcgg
tcggcaagggtagtaccccccccccgtctTCTCGACTTGCTCGGACTCAA
ATTCATGTATAAAAGATAAAGATATGATGGTACTTTTGGGTACTTTTGGC
TCAAAAGTGAAGAGCCCTGAGCGAAAATTGAATTTGACTTATACTGAGCG
TCTGGGTTCCGAATATTTGGCTTTACACCTTTGTTCTCATTCTAATGTAA
ATAGTTTCTGTATAACTTGTTTTGTGTTTTCAATACCAGGTGACTTGAGA
ACCACTGAACCATATTTAAAGAGGTATACACCAGAGTTTAAGCTTGCCTT
TCCTctttaaaatggaaaaaaaatgagtaaaaactCAAATTATTTCGGAC
TCCAAACCCTTATACTTTGTTCTCAGTCCCGGTACTTTCACTAGCCTCGA
TCCTTCTCCTAAAAGCATCAACGGGCTTACAGAACAATACATTTTTTCAG
GTTTGTTTTTAATGACACTTTCTTATTTTTATCGATAAATTTATGCTTAA
TTTATTCGGGTTATTTATTAATTGATAATAATTTACAACAAAAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_245:842315..842961

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054886 ID=TCONS_00054886|Name=TCONS_00054886|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_245:842315..842961 (Clytia hemisphaerica)
TAATTTTTGTTGTAAATTATTATCAATTAATAAATAACCCGAATAAATTA
AGCATAAATTTATCGATAAAAATAAGAAAGTGTCATTAAAAACAAACCTG
AAAAAATGTATTGTTCTGTAAGCCCGTTGATGCTTTTAGGAGAAGGATCG
AGGCTAGTGAAAGTACCGGGACTGAGAACAAAGTATAAGGGTTTGGAGTC
CGAAATAATTTGagtttttactcattttttttccattttaaagAGGAAAG
GCAAGCTTAAACTCTGGTGTATACCTCTTTAAATATGGTTCAGTGGTTCT
CAAGTCACCTGGTATTGAAAACACAAAACAAGTTATACAGAAACTATTTA
CATTAGAATGAGAACAAAGGTGTAAAGCCAAATATTCGGAACCCAGACGC
TCAGTATAAGTCAAATTCAATTTTCGCTCAGGGCTCTTCACTTTTGAGCC
AAAAGTACCCAAAAGTACCATCATATCTTTATCTTTTATACATGAATTTG
AGTCCGAGCAAGTCGAGAagacggggggggggtactacccttgccgaccg
acgggggtgctccaccattgagtttcaagcccgaagggctagaggtcaat
ctctttggtaggatttgaagccaacaaatcctaccaaagttgcgcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034584XLOC_034584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054886-exon-scaffold_245-1491911889:842315..842961TCONS_00054886-exon-scaffold_245-1491911889:842315..842961Clytia hemisphaericaexon
TCONS_00054886-exon-scaffold_245-1510915933:842315..842961TCONS_00054886-exon-scaffold_245-1510915933:842315..842961Clytia hemisphaericaexon
TCONS_00054886-exon-scaffold_245-1575043694:842315..842961TCONS_00054886-exon-scaffold_245-1575043694:842315..842961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:842315..842961 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96264	1.8904	0.313649	0.70256	1.02535	0.838937	0.847275	1.4008	0.683111	0.986536	1.0456	1.13087	1.63944	1.0463	0.355974	0.383875	0.491704	0.857679	2.49806	2.40584	1.25558	0.971873	2.44245	2.79403	1.05512	0.800901	9.79289	5.66329	0.505373	0.495422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top