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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054885 ID=TCONS_00054885|Name=TCONS_00054885|organism=Clytia hemisphaerica|type=transcript|length=1873bp
TACCATTTTAAATACTATTATCAAAAAAGATTGATTAATCTAAAAGTACC
AACATCCAAAGCAGAGAGCGTTGGACACAACATGACCGGTATGTGATGAG
AGaataaatgacagaaaaaaCTTTGTATGGAATTAAAATCGCAATACCAT
TAAAAGAGTATTTTTTTGTTGTACAGGCAAAAGAACAATAATAGAATAGC
ATGAAAAGTCCAATTAGAATAACAGTATCAACGTTTGAAGATGATACCAT
CTCTACNTAGCATGAAAAGTCCAATTAGAATAACAGTATCAACGTTTGAA
GATGATGCCATCTCTTCAGAAGGGCGGCTttccaatcaaagcagcaaaga
AACGTGTGAAGACCAGCAAGGTTCTGCCAAAGACATTAAATCAGCAAATC
ATATTGATGGGCAAGGCAACTTATTGAATCACAATACCATGTATAAGAAG
AGCAAGAATCTAAATAAGCAGCCATTATCACGATCTTACTCTTCACCACC
AGCCAACGGCAGACGTCCAATCAACTTGAACAAGAAATTATTAGAAGTTC
CTAAAGTCGCAACTGTTTACCAAGAGCCTTCAAAGATGCACAAAACTAAA
GTGGTATCCATGCGAACTAAAGACAAAATCGGGGATAACAATCACGTGAC
TTATTACCCGAATCGGAAATTATCGGATTCATGGATTGGGAGTCATATCA
ATGTAGCTGAAAACTTGATTAATGCAGAGGAGGAAAAACttacaaataaa
gaacaaaggaaaCAATCAAACGAGAAAAAAGATGGTAACCTTTTGAACAC
TGGGTCCAGTAGTAGCAGCAGTCCGTTTAAGCGTCCGAAAAGTGGTAGTA
AAAGCAGCGGAAACTCACCTGTGGGTAGTTTCCGGAAGTTAAAAGACAAG
ACGAAAAACTTAACATCGCCGACATCGGAGAAAGCAAGTAGTGGTTTTTC
AAGAGGAAGTTTCCGTAAAAATAAAACGTCAAATACTTCAACCTCGTCGT
CGTCGACGGagcaaaaagaacaacaaacaaCGTCGTCGTCCCGTGGCAGC
TTTCGTCGACCCAAGTTGAATCTTAAGAAACTTGATCTTTCAGAGAACAA
ATTCTTATCAAGTATTACCAATAAATCAGGcaataaaaataaagatttga
atAACAATAATACCAATAATAATGCATCGACCGTCGCCGAAACAATTCCG
GAAAAGCAGAACTCGTTAACTGTTCCCGATGACAAAATGTCTCCCAAATC
AGATAAAAAGACAGACAACATTCCCTTGTTAACACCACCTGTTATAATTG
ATGATTTCGAAATGCGATTAAAGGAAACTGAAATCCGTGAAATGATACAA
CAACATTTTAACCAGCATTTAGAGGGGGTTGGGTATGAGCACGAGGTCAA
TGAGAAACGGAGTATACATTTAAGTCAACAGATTCATGATAACTTGAAAG
TGATGACAGATGAAAACTTCAAATTCATTGTTTCCGTGTTTATTGGTGAG
ATACGAGACGAAGGAATGGAAACTAGTTCCCAGTGCGTTTGGGATCCGAA
ACAGGATTGTGTTGTGATGGGGTATTATAAGAATGATTCACTGTTTGCGA
TCGCAGTTGTTTTTGCGATTGCGTTGGATTCAAACGATTTGTAAACTTCA
GTTCTTTCAAAGAAAACAAGTCTTTATATTTTGCAGGGCTGATTAAAAAA
TCCGTACCCTTAGACTTTTTATGTACTTTTTTATCGTATTTGTATAGAAA
TAAGATCTTCAATATTTATACCCTTGTAGATTTTAAGCCTATGCGTGAAA
TTTGAGGTTTTTTAGCTAAATGGTTGTAAAAGTATCGATGGTAACTAAAG
TTTTCGGCGAATTTATTCCATCT Run BLAST on NCBI protein sequence of TCONS_00054885-protein >TCONS_00054885-protein ID=TCONS_00054885-protein|Name=TCONS_00054885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MIPSLXSMKSPIRITVSTFEDDAISSEGRLSNQSSKETCEDQQGSAKDIK
SANHIDGQGNLLNHNTMYKKSKNLNKQPLSRSYSSPPANGRRPINLNKKL
LEVPKVATVYQEPSKMHKTKVVSMRTKDKIGDNNHVTYYPNRKLSDSWIG
SHINVAENLINAEEEKLTNKEQRKQSNEKKDGNLLNTGSSSSSSPFKRPK
SGSKSSGNSPVGSFRKLKDKTKNLTSPTSEKASSGFSRGSFRKNKTSNTS
TSSSSTEQKEQQTTSSSRGSFRRPKLNLKKLDLSENKFLSSITNKSGNKN
KDLNNNNTNNNASTVAETIPEKQNSLTVPDDKMSPKSDKKTDNIPLLTPP
VIIDDFEMRLKETEIREMIQQHFNQHLEGVGYEHEVNEKRSIHLSQQIHD
NLKVMTDENFKFIVSVFIGEIRDEGMETSSQCVWDPKQDCVVMGYYKNDS
LFAIAVVFAIALDSNDL Run BLAST on NCBI transcript from alignment at scaffold_245:836914..838786 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054885 ID=TCONS_00054885|Name=TCONS_00054885|organism=Clytia hemisphaerica|type=transcript|length=1873bp|location=Sequence derived from alignment at scaffold_245:836914..838786 (Clytia hemisphaerica)
AGATGGAATAAATTCGCCGAAAACTTTAGTTACCATCGATACTTTTACAA
CCATTTAGCTAAAAAACCTCAAATTTCACGCATAGGCTTAAAATCTACAA
GGGTATAAATATTGAAGATCTTATTTCTATACAAATACGATAAAAAAGTA
CATAAAAAGTCTAAGGGTACGGATTTTTTAATCAGCCCTGCAAAATATAA
AGACTTGTTTTCTTTGAAAGAACTGAAGTTTACAAATCGTTTGAATCCAA
CGCAATCGCAAAAACAACTGCGATCGCAAACAGTGAATCATTCTTATAAT
ACCCCATCACAACACAATCCTGTTTCGGATCCCAAACGCACTGGGAACTA
GTTTCCATTCCTTCGTCTCGTATCTCACCAATAAACACGGAAACAATGAA
TTTGAAGTTTTCATCTGTCATCACTTTCAAGTTATCATGAATCTGTTGAC
TTAAATGTATACTCCGTTTCTCATTGACCTCGTGCTCATACCCAACCCCC
TCTAAATGCTGGTTAAAATGTTGTTGTATCATTTCACGGATTTCAGTTTC
CTTTAATCGCATTTCGAAATCATCAATTATAACAGGTGGTGTTAACAAGG
GAATGTTGTCTGTCTTTTTATCTGATTTGGGAGACATTTTGTCATCGGGA
ACAGTTAACGAGTTCTGCTTTTCCGGAATTGTTTCGGCGACGGTCGATGC
ATTATTATTGGTATTATTGTTattcaaatctttatttttattgCCTGATT
TATTGGTAATACTTGATAAGAATTTGTTCTCTGAAAGATCAAGTTTCTTA
AGATTCAACTTGGGTCGACGAAAGCTGCCACGGGACGACGACGttgtttg
ttgttctttttgctCCGTCGACGACGACGAGGTTGAAGTATTTGACGTTT
TATTTTTACGGAAACTTCCTCTTGAAAAACCACTACTTGCTTTCTCCGAT
GTCGGCGATGTTAAGTTTTTCGTCTTGTCTTTTAACTTCCGGAAACTACC
CACAGGTGAGTTTCCGCTGCTTTTACTACCACTTTTCGGACGCTTAAACG
GACTGCTGCTACTACTGGACCCAGTGTTCAAAAGGTTACCATCTTTTTTC
TCGTTTGATTGtttcctttgttctttatttgtaaGTTTTTCCTCCTCTGC
ATTAATCAAGTTTTCAGCTACATTGATATGACTCCCAATCCATGAATCCG
ATAATTTCCGATTCGGGTAATAAGTCACGTGATTGTTATCCCCGATTTTG
TCTTTAGTTCGCATGGATACCACTTTAGTTTTGTGCATCTTTGAAGGCTC
TTGGTAAACAGTTGCGACTTTAGGAACTTCTAATAATTTCTTGTTCAAGT
TGATTGGACGTCTGCCGTTGGCTGGTGGTGAAGAGTAAGATCGTGATAAT
GGCTGCTTATTTAGATTCTTGCTCTTCTTATACATGGTATTGTGATTCAA
TAAGTTGCCTTGCCCATCAATATGATTTGCTGATTTAATGTCTTTGGCAG
AACCTTGCTGGTCTTCACACGTTtctttgctgctttgattggaaAGCCGC
CCTTCTGAAGAGATGGCATCATCTTCAAACGTTGATACTGTTATTCTAAT
TGGACTTTTCATGCTANGTAGAGATGGTATCATCTTCAAACGTTGATACT
GTTATTCTAATTGGACTTTTCATGCTATTCTATTATTGTTCTTTTGCCTG
TACAACAAAAAAATACTCTTTTAATGGTATTGCGATTTTAATTCCATACA
AAGttttttctgtcatttattCTCTCATCACATACCGGTCATGTTGTGTC
CAACGCTCTCTGCTTTGGATGTTGGTACTTTTAGATTAATCAATCTTTTT
TGATAATAGTATTTAAAATGGTA Coding sequence (CDS) from alignment at scaffold_245:836914..838786 >TCONS_00054885 ID=TCONS_00054885|Name=TCONS_00054885|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_245:836914..838786 (Clytia hemisphaerica)
TTACAAATCGTTTGAATCCAACGCAATCGCAAAAACAACTGCGATCGCAA
ACAGTGAATCATTCTTATAATACCCCATCACAACACAATCCTGTTTCGGA
TCCCAAACGCACTGGGAACTAGTTTCCATTCCTTCGTCTCGTATCTCACC
AATAAACACGGAAACAATGAATTTGAAGTTTTCATCTGTCATCACTTTCA
AGTTATCATGAATCTGTTGACTTAAATGTATACTCCGTTTCTCATTGACC
TCGTGCTCATACCCAACCCCCTCTAAATGCTGGTTAAAATGTTGTTGTAT
CATTTCACGGATTTCAGTTTCCTTTAATCGCATTTCGAAATCATCAATTA
TAACAGGTGGTGTTAACAAGGGAATGTTGTCTGTCTTTTTATCTGATTTG
GGAGACATTTTGTCATCGGGAACAGTTAACGAGTTCTGCTTTTCCGGAAT
TGTTTCGGCGACGGTCGATGCATTATTATTGGTATTATTGTTattcaaat
ctttatttttattgCCTGATTTATTGGTAATACTTGATAAGAATTTGTTC
TCTGAAAGATCAAGTTTCTTAAGATTCAACTTGGGTCGACGAAAGCTGCC
ACGGGACGACGACGttgtttgttgttctttttgctCCGTCGACGACGACG
AGGTTGAAGTATTTGACGTTTTATTTTTACGGAAACTTCCTCTTGAAAAA
CCACTACTTGCTTTCTCCGATGTCGGCGATGTTAAGTTTTTCGTCTTGTC
TTTTAACTTCCGGAAACTACCCACAGGTGAGTTTCCGCTGCTTTTACTAC
CACTTTTCGGACGCTTAAACGGACTGCTGCTACTACTGGACCCAGTGTTC
AAAAGGTTACCATCTTTTTTCTCGTTTGATTGtttcctttgttctttatt
tgtaaGTTTTTCCTCCTCTGCATTAATCAAGTTTTCAGCTACATTGATAT
GACTCCCAATCCATGAATCCGATAATTTCCGATTCGGGTAATAAGTCACG
TGATTGTTATCCCCGATTTTGTCTTTAGTTCGCATGGATACCACTTTAGT
TTTGTGCATCTTTGAAGGCTCTTGGTAAACAGTTGCGACTTTAGGAACTT
CTAATAATTTCTTGTTCAAGTTGATTGGACGTCTGCCGTTGGCTGGTGGT
GAAGAGTAAGATCGTGATAATGGCTGCTTATTTAGATTCTTGCTCTTCTT
ATACATGGTATTGTGATTCAATAAGTTGCCTTGCCCATCAATATGATTTG
CTGATTTAATGTCTTTGGCAGAACCTTGCTGGTCTTCACACGTTtctttg
ctgctttgattggaaAGCCGCCCTTCTGAAGAGATGGCATCATCTTCAAA
CGTTGATACTGTTATTCTAATTGGACTTTTCATGCTANGTAGAGATGGTA
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054885-exon-scaffold_245-1491911889:836914..838786 | TCONS_00054885-exon-scaffold_245-1491911889:836914..838786 | Clytia hemisphaerica | exon |
| TCONS_00054885-exon-scaffold_245-1510915933:836914..838786 | TCONS_00054885-exon-scaffold_245-1510915933:836914..838786 | Clytia hemisphaerica | exon |
| TCONS_00054885-exon-scaffold_245-1575043694:836914..838786 | TCONS_00054885-exon-scaffold_245-1575043694:836914..838786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:836914..838786 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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