TCONS_00054884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054884
Unique NameTCONS_00054884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054884 ID=TCONS_00054884|Name=TCONS_00054884|organism=Clytia hemisphaerica|type=transcript|length=252bp
CCAGTGACGTTTCATAATCTTTTAGCATCTATTGGTTTTAAATCAATAAT
GTTGAGCACTTTTAACGGGAGTCTGTATGGTtttgtttaaacttttttat
acCTGTTGAAAATTGACAGGTCTGTCAAATGAGAGGTGGGAAGGAGGGCC
GTCGATATTCATcattgttatatatttttgtaaatatactGATAAGAAAT
CAATCTAACTCCGAATTCCATTGAATGATACACTTCTCCCACGTTCTCAA
AT
Run BLAST on NCBI

transcript from alignment at scaffold_245:836597..836848

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054884 ID=TCONS_00054884|Name=TCONS_00054884|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at scaffold_245:836597..836848 (Clytia hemisphaerica)
ATTTGAGAACGTGGGAGAAGTGTATCATTCAATGGAATTCGGAGTTAGAT
TGATTTCTTATCagtatatttacaaaaatatataacaatgATGAATATCG
ACGGCCCTCCTTCCCACCTCTCATTTGACAGACCTGTCAATTTTCAACAG
gtataaaaaagtttaaacaaaACCATACAGACTCCCGTTAAAAGTGCTCA
ACATTATTGATTTAAAACCAATAGATGCTAAAAGATTATGAAACGTCACT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034582XLOC_034582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054884-exon-scaffold_245-1491911889:836597..836848TCONS_00054884-exon-scaffold_245-1491911889:836597..836848Clytia hemisphaericaexon
TCONS_00054884-exon-scaffold_245-1510915933:836597..836848TCONS_00054884-exon-scaffold_245-1510915933:836597..836848Clytia hemisphaericaexon
TCONS_00054884-exon-scaffold_245-1575043694:836597..836848TCONS_00054884-exon-scaffold_245-1575043694:836597..836848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:836597..836848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.98807	0	0	0	0.557642	0	0.789648	0	1.43643	0	0.851718	0.774335	2.39264	10.6769	3.05572	1.08705	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top