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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054877 ID=TCONS_00054877|Name=TCONS_00054877|organism=Clytia hemisphaerica|type=transcript|length=1446bp
TTAAGACAATTTCAGACTTATATattctttagaacaacaaaaaacgcgaa
aaactaCAAACACgacaaaattgaattgaaagttAATCATTTGAGTAAGT
CTATACAATAATAGCGACCACCAGGGCCATGGTTAGATATTGTATATAGA
GGTACATCTCCAAATTTATGGTGATGACCTATCTCGTACATAGAagtgat
tttcattttcatcataaCTTCTTTTACTTTCTCAACATTTTCTTTAGTAG
ACAAATCGATTGCTTTCAGATTGACATTATTAACTGGTAGACCTTCAAAT
AACGCAAATTCTTCCGGACTAAATTGCTCTGGTTCGTCATTACTGCAGCC
TATGGATAACGCCATcaagaatttcatttttcttataatctCGACAGCTT
CAGGAAGCTTCCCGTTTTTGATATCAAAATGTTGAATGTTCAGACGTGTT
ATTGGCAAATCAACGTATAAtgacattttagttttttggtcATTATGATT
TAAGTCCCAGTCCAACGCTTTAAGGTGCTTCATTTTCTTGAAGGTTGGAA
CATATTCATCCAAAGTTGATTGACCTGCGAATTGGATTTCGAACCCATCA
AACGGCAATGGAATTAAAAAGATATCACGAACATTCAAAATTGACGTAGA
AATGGATGTAATCTTGAGCCCTTGTGAAACCATTTGATCTAAATGCGCGA
CTGTGAATTTGAAATCATCTTTTTGGGTAACAAGTCGATCCAAAGAGATC
AATGTGGAACTCAACTTTGAAGCTATCAAGTCAATAAACTCGTCAAATGT
CCCAGCACGCAGGTCAAGACAATCTGTAGATAATTGGTAGATTCCAAAGA
CATTCGAGATCATTTCCAATTCTTTGAGAGACCATCTTTTCaaattattg
tattttttggtTGAAACTGAAACACCATGGTTCCCATGATGCACTTCGTC
TAATTTCTGTCCATGGTGATGGTCGAGAATCAAAGCTCGAATTTTATGCG
TTTTAGACATCTCCAGTAAAGATTCAAAATCCTCACTCGTTTCTAAATTC
ACCGATTTTGTGTGAATGACAAGCTCAATGTCACTTATCGGAAGTTTTTT
CAGATCTTGCAATGAAATTTCATAATATTGATTAATATAAAGAATCTGAA
TTCCTTTCAAGAAGCCCCAACAATTTTCgtcaaaaatattgaagttaAAC
AAGGATGTATGGATTTCTTGTATTGGTAAATGTGTCGATTCTTTAGCGAA
CTTCAATGATATTATTTTCTTGAACTGCGGGTAATTCCATATCTTTTCTA
AAGACATTTTATGAAACCATTTGGAGCACAAAGCCATGTTCTTGGCATCT
GACTTTGATAGATAGGAAATAACCAATTTGAACAACTCATCTGGCAATGC
GGTGATTTCCATTCCTAAACGAATATTTTTCTACAGATCTATAAAA Run BLAST on NCBI protein sequence of TCONS_00054877-protein >TCONS_00054877-protein ID=TCONS_00054877-protein|Name=TCONS_00054877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MEITALPDELFKLVISYLSKSDAKNMALCSKWFHKMSLEKIWNYPQFKKI
ISLKFAKESTHLPIQEIHTSLFNFNIFDENCWGFLKGIQILYINQYYEIS
LQDLKKLPISDIELVIHTKSVNLETSEDFESLLEMSKTHKIRALILDHHH
GQKLDEVHHGNHGVSVSTKKYNNLKRWSLKELEMISNVFGIYQLSTDCLD
LRAGTFDEFIDLIASKLSSTLISLDRLVTQKDDFKFTVAHLDQMVSQGLK
ITSISTSILNVRDIFLIPLPFDGFEIQFAGQSTLDEYVPTFKKMKHLKAL
DWDLNHNDQKTKMSLYVDLPITRLNIQHFDIKNGKLPEAVEIIRKMKFLM
ALSIGCSNDEPEQFSPEEFALFEGLPVNNVNLKAIDLSTKENVEKVKEVM
MKMKITSMYEIGHHHKFGDVPLYTISNHGPGGRYYCIDLLK Run BLAST on NCBI transcript from alignment at scaffold_245:707391..708836 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054877 ID=TCONS_00054877|Name=TCONS_00054877|organism=Clytia hemisphaerica|type=transcript|length=1446bp|location=Sequence derived from alignment at scaffold_245:707391..708836 (Clytia hemisphaerica)
TTTTATAGATCTGTAGAAAAATATTCGTTTAGGAATGGAAATCACCGCAT
TGCCAGATGAGTTGTTCAAATTGGTTATTTCCTATCTATCAAAGTCAGAT
GCCAAGAACATGGCTTTGTGCTCCAAATGGTTTCATAAAATGTCTTTAGA
AAAGATATGGAATTACCCGCAGTTCAAGAAAATAATATCATTGAAGTTCG
CTAAAGAATCGACACATTTACCAATACAAGAAATCCATACATCCTTGTTt
aacttcaatatttttgacGAAAATTGTTGGGGCTTCTTGAAAGGAATTCA
GATTCTTTATATTAATCAATATTATGAAATTTCATTGCAAGATCTGAAAA
AACTTCCGATAAGTGACATTGAGCTTGTCATTCACACAAAATCGGTGAAT
TTAGAAACGAGTGAGGATTTTGAATCTTTACTGGAGATGTCTAAAACGCA
TAAAATTCGAGCTTTGATTCTCGACCATCACCATGGACAGAAATTAGACG
AAGTGCATCATGGGAACCATGGTGTTTCAGTTTCAaccaaaaaatacaat
aatttGAAAAGATGGTCTCTCAAAGAATTGGAAATGATCTCGAATGTCTT
TGGAATCTACCAATTATCTACAGATTGTCTTGACCTGCGTGCTGGGACAT
TTGACGAGTTTATTGACTTGATAGCTTCAAAGTTGAGTTCCACATTGATC
TCTTTGGATCGACTTGTTACCCAAAAAGATGATTTCAAATTCACAGTCGC
GCATTTAGATCAAATGGTTTCACAAGGGCTCAAGATTACATCCATTTCTA
CGTCAATTTTGAATGTTCGTGATATCTTTTTAATTCCATTGCCGTTTGAT
GGGTTCGAAATCCAATTCGCAGGTCAATCAACTTTGGATGAATATGTTCC
AACCTTCAAGAAAATGAAGCACCTTAAAGCGTTGGACTGGGACTTAAATC
ATAATgaccaaaaaactaaaatgtcaTTATACGTTGATTTGCCAATAACA
CGTCTGAACATTCAACATTTTGATATCAAAAACGGGAAGCTTCCTGAAGC
TGTCGagattataagaaaaatgaaattcttgATGGCGTTATCCATAGGCT
GCAGTAATGACGAACCAGAGCAATTTAGTCCGGAAGAATTTGCGTTATTT
GAAGGTCTACCAGTTAATAATGTCAATCTGAAAGCAATCGATTTGTCTAC
TAAAGAAAATGTTGAGAAAGTAAAAGAAGttatgatgaaaatgaaaatca
ctTCTATGTACGAGATAGGTCATCACCATAAATTTGGAGATGTACCTCTA
TATACAATATCTAACCATGGCCCTGGTGGTCGCTATTATTGTATAGACTT
ACTCAAATGATTaactttcaattcaattttgtcGTGTTTGtagtttttcg
cgttttttgttgttctaaagaatATATAAGTCTGAAATTGTCTTAA Coding sequence (CDS) from alignment at scaffold_245:707391..708836 >TCONS_00054877 ID=TCONS_00054877|Name=TCONS_00054877|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_245:707391..708836 (Clytia hemisphaerica)
ATGGAAATCACCGCATTGCCAGATGAGTTGTTCAAATTGGTTATTTCCTA
TCTATCAAAGTCAGATGCCAAGAACATGGCTTTGTGCTCCAAATGGTTTC
ATAAAATGTCTTTAGAAAAGATATGGAATTACCCGCAGTTCAAGAAAATA
ATATCATTGAAGTTCGCTAAAGAATCGACACATTTACCAATACAAGAAAT
CCATACATCCTTGTTtaacttcaatatttttgacGAAAATTGTTGGGGCT
TCTTGAAAGGAATTCAGATTCTTTATATTAATCAATATTATGAAATTTCA
TTGCAAGATCTGAAAAAACTTCCGATAAGTGACATTGAGCTTGTCATTCA
CACAAAATCGGTGAATTTAGAAACGAGTGAGGATTTTGAATCTTTACTGG
AGATGTCTAAAACGCATAAAATTCGAGCTTTGATTCTCGACCATCACCAT
GGACAGAAATTAGACGAAGTGCATCATGGGAACCATGGTGTTTCAGTTTC
AaccaaaaaatacaataatttGAAAAGATGGTCTCTCAAAGAATTGGAAA
TGATCTCGAATGTCTTTGGAATCTACCAATTATCTACAGATTGTCTTGAC
CTGCGTGCTGGGACATTTGACGAGTTTATTGACTTGATAGCTTCAAAGTT
GAGTTCCACATTGATCTCTTTGGATCGACTTGTTACCCAAAAAGATGATT
TCAAATTCACAGTCGCGCATTTAGATCAAATGGTTTCACAAGGGCTCAAG
ATTACATCCATTTCTACGTCAATTTTGAATGTTCGTGATATCTTTTTAAT
TCCATTGCCGTTTGATGGGTTCGAAATCCAATTCGCAGGTCAATCAACTT
TGGATGAATATGTTCCAACCTTCAAGAAAATGAAGCACCTTAAAGCGTTG
GACTGGGACTTAAATCATAATgaccaaaaaactaaaatgtcaTTATACGT
TGATTTGCCAATAACACGTCTGAACATTCAACATTTTGATATCAAAAACG
GGAAGCTTCCTGAAGCTGTCGagattataagaaaaatgaaattcttgATG
GCGTTATCCATAGGCTGCAGTAATGACGAACCAGAGCAATTTAGTCCGGA
AGAATTTGCGTTATTTGAAGGTCTACCAGTTAATAATGTCAATCTGAAAG
CAATCGATTTGTCTACTAAAGAAAATGTTGAGAAAGTAAAAGAAGttatg
atgaaaatgaaaatcactTCTATGTACGAGATAGGTCATCACCATAAATT
TGGAGATGTACCTCTATATACAATATCTAACCATGGCCCTGGTGGTCGCT
ATTATTGTATAGACTTACTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054877-exon-scaffold_245-1491911889:707391..708836 | TCONS_00054877-exon-scaffold_245-1491911889:707391..708836 | Clytia hemisphaerica | exon |
| TCONS_00054877-exon-scaffold_245-1510915933:707391..708836 | TCONS_00054877-exon-scaffold_245-1510915933:707391..708836 | Clytia hemisphaerica | exon |
| TCONS_00054877-exon-scaffold_245-1575043694:707391..708836 | TCONS_00054877-exon-scaffold_245-1575043694:707391..708836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:707391..708836 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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