TCONS_00054866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054866
Unique NameTCONS_00054866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054866 ID=TCONS_00054866|Name=TCONS_00054866|organism=Clytia hemisphaerica|type=transcript|length=237bp
CAAGTTGTCAAGTATTCTTTGAAGCTCTATGGCCAATCCAATCCTTGTAG
GGTTTAGAttgtaaacttttattattattattaatctgGCTCTGTTAAAT
CTTTTGAATACGTTTCAAAAAATCCCAGtataatatttcaatatttaatA
TGCCTCAGTATATCTGAGATCCTTGGATATTTTTTTAAGGTACCAATAAT
TTTTTAACGTGCCTCAGTATCTTATCTTGATATTATC
Run BLAST on NCBI

transcript from alignment at scaffold_245:428524..428760

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054866 ID=TCONS_00054866|Name=TCONS_00054866|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at scaffold_245:428524..428760 (Clytia hemisphaerica)
GATAATATCAAGATAAGATACTGAGGCACGTTAAAAAATTATTGGTACCT
TAAAAAAATATCCAAGGATCTCAGATATACTGAGGCATattaaatattga
aatattataCTGGGATTTTTTGAAACGTATTCAAAAGATTTAACAGAGCc
agattaataataataataaaagtttacaaTCTAAACCCTACAAGGATTGG
ATTGGCCATAGAGCTTCAAAGAATACTTGACAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034565XLOC_034565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054866-exon-scaffold_245-1491911889:428524..428760TCONS_00054866-exon-scaffold_245-1491911889:428524..428760Clytia hemisphaericaexon
TCONS_00054866-exon-scaffold_245-1510915933:428524..428760TCONS_00054866-exon-scaffold_245-1510915933:428524..428760Clytia hemisphaericaexon
TCONS_00054866-exon-scaffold_245-1575043694:428524..428760TCONS_00054866-exon-scaffold_245-1575043694:428524..428760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:428524..428760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.943946	1.84099	1.06878	0	0	0	0	2.2723	0	0	0	0.628663	0.627789	0.651965	0.536004	0.575214	0	0	0	0	0.91266	0	1.08231	0.983977	0	0	1.29434	2.7627	1.04771	1.06745
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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