TCONS_00054860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054860
Unique NameTCONS_00054860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054860 ID=TCONS_00054860|Name=TCONS_00054860|organism=Clytia hemisphaerica|type=transcript|length=511bp
TGTTATCCACGATTTAATTTACTTTAAGGTGAAGCTTTATCGAACATTGC
ATTATTCTGAAGTGTTCCATGCATACAATGTTGATCCCACAGATGAGATC
CATTTTCTATCTTATGATTCACTATTGGACTACAATGTGGTGCATCTGAA
GGTTGACTCTAATGGTAATCCTTATGCACAACCAAAGTATTCATTGAAAG
ATATTGTTTTAGAATCTATAGAGGGAGAGAATCCTATAGACCTTCATTAG
GATAAAGTTTGCCAATTTATTTTTCAGTATtaatttagatatttcaaaaa
atagagAACGTATAATAATATAGCAAAAACATtctctatattttatgttt
gagctttctttattttttcacccTCATTCACACAGGCTTTTGTTTTAGTT
AAGTACGAAACCTTTCTCTTTTGTGATAAATTGCAGGGGGTCTTTTAGAA
CTTTAAACAAGATTcgcaaaaatgcgactaaaaaTTTCCCTTTTATAAGC
GTGAAAAATGC
Run BLAST on NCBI

transcript from alignment at scaffold_245:176203..176713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054860 ID=TCONS_00054860|Name=TCONS_00054860|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at scaffold_245:176203..176713 (Clytia hemisphaerica)
GCATTTTTCACGCTTATAAAAGGGAAAtttttagtcgcatttttgcgAAT
CTTGTTTAAAGTTCTAAAAGACCCCCTGCAATTTATCACAAAAGAGAAAG
GTTTCGTACTTAACTAAAACAAAAGCCTGTGTGAATGAgggtgaaaaaat
aaagaaagctcaaacataaaatatagagaATGTTTTTGCTATATTATTAT
ACGTTctctattttttgaaatatctaaattaATACTGAAAAATAAATTGG
CAAACTTTATCCTAATGAAGGTCTATAGGATTCTCTCCCTCTATAGATTC
TAAAACAATATCTTTCAATGAATACTTTGGTTGTGCATAAGGATTACCAT
TAGAGTCAACCTTCAGATGCACCACATTGTAGTCCAATAGTGAATCATAA
GATAGAAAATGGATCTCATCTGTGGGATCAACATTGTATGCATGGAACAC
TTCAGAATAATGCAATGTTCGATAAAGCTTCACCTTAAAGTAAATTAAAT
CGTGGATAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034559XLOC_034559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054860-exon-scaffold_245-1491911889:176203..176713TCONS_00054860-exon-scaffold_245-1491911889:176203..176713Clytia hemisphaericaexon
TCONS_00054860-exon-scaffold_245-1510915933:176203..176713TCONS_00054860-exon-scaffold_245-1510915933:176203..176713Clytia hemisphaericaexon
TCONS_00054860-exon-scaffold_245-1575043694:176203..176713TCONS_00054860-exon-scaffold_245-1575043694:176203..176713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:176203..176713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58738	0.916461	0.399037	0.130132	3.80215	2.50376	1.20827	2.40373	0.791958	0.735726	0.714113	1.17358	0.546907	0.405692	1.26743	1.00221	1.5874	0.361563	0.749277	0	1.02224	1.32964	1.21226	0.979663	0.630644	1.0131	0.483249	0.343824	0.391167	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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