TCONS_00054812 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054812
Unique Name	TCONS_00054812
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3397

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_245:357886..369473-

transcript sequence

>TCONS_00054812 ID=TCONS_00054812|Name=TCONS_00054812|organism=Clytia hemisphaerica|type=transcript|length=3397bp
TGCAGTTAAGATCTCAGAGAGTGCCCTCAAAgctgcaaaacaaaaattta
attcagAAGAGGTCAACCACGCAAACAATATTTCAACTGCAACCCCATTC
GCTGGGTTTCAAACTGCTAAAGGAAGTGCAGTCAAGATCTCAGAGAGTGC
CCTCAAAgctgcaaaacaaaaatttgattctgACGAGGTCAGCAATTCAA
CAAGTCACCCTTCTACAATAACCCCTTTTACTGGGTTTCAAACCGCCGAA
GGAAAGACCGTTAGTATCTCAGAGGAATCAATTAAAGCTGCACAATCAAA
GTTTGATGCGGACGAGACGAGCAGTCTTTCCAAGTTCACAACACCAGGAT
TTTCTTTGAATGCGCACTCTAAATATCTCAATATGGAAGCACCCAAAGCA
AAGAGAAAGATTCATTATACCACACCTGACCAATACCAGTTTGATAGAGC
TGTCACGATGACAAGACCTCTTTCACCCGCAGTTGCAAGATACAGTACAA
AGCAAAAAGATAAAAGCCGAAGTGAACAAAAGCCGAGCAATGCACAAAAC
TTGAACAATTCATTCATGACAcctttcaaaagtttaaagagaAGTTGTTC
AGCAAAGGAAAGCCAACCGAAAgtggaaaataaaaaacgaaagaAGAATT
TGTTCTCTTACAAACCACTGTTCGTGAATACCATAGCTGAGGTGAAAGAA
GAGGGAATGCAATTCGATGATGATCCTAAGGATGAACATATTCGCAAATC
AAGGTTCAATGTCGATGGAATTTATCAATcgaagaaaaaaacgaaatcaa
GTTTTCCGGAATTTGTTAATTATTGCTCTCCTTCAGTTTATTCTAGAAAA
GAGCTACAGGAATATGGTCTTCAAGACTCCGTAATTAATCTGAGTGGAGA
CAGTGCTTTGGATTTTACATTTGATGCAAAAAAGTATTTCAGCTTGCAAG
TTGCAATTTCTGGCAAATTGGCTTTATGTTGTGGATTCCAAATAGTCATT
AatgaaaaggttgaaattgGGCTGAATGAAATCAAAAGtgCATTTATGAA
GAGCAATGATATCGACAAATCGTTGGTACCAGAAAGGTGGATAGAGAACC
ATTTCAAATGGATTGTATGGAAATTAGCCGCTTACGAACGACGCTTTCCT
GGCCAGTTTGCTAACAAATGCTTGACACCTTTTATTGTGATGGAGCAACT
CAGATATCGCTACGATAAAGAGCTTGAAAAAGCAGAACGGTCATGCTTGA
AGAAGATTTATGAACGCGATGACATTTCAACTCGTAGGATGATTCTCTTT
GTTAGTGATATATTGCATGCTGTTTCAAACAATGACCAAAAGTGCAAAaC
TGTGATCAAACTATCAGATGGTTGGTATGAGATCAAGGCTGGTCTAGATC
AACCTTTGAGTGCATTCTTGGACCACAAGAAAATTGCCATCGGAACAAAA
CTCTGTGTGTACGGTGCTGAATTGATCGGATCCACGCAAGCCTGTCCTCC
TTTACAGGCACCTGAAGATTTGATGTTGATGTTATCAGCCAATTCCACAC
GAAGAGCATCATGGGATACTAAGCTTGGATTTCAGCCAATCAAACAAGCC
TTTGCTGTCCCTTTGACGTCGCTATATTCGGACGGGGGTTCTGTTGGTTG
TGTCAATATCACTATTCTTCGAAAATACCCTACTCAATGGATGCAGAAAG
AGGGCGGACGTTGCATCTTCCGAAACCTCCAACAAGAAGAGGAGGCGAAG
AAGAAATacgaagaacaaaaacaaaagaaaatggaaaCACTCTACGCATC
CATTCAAAAAGAATTCGAAGAAACTACCAATAAAGGAACGAAACGTAAAA
GACGAAGTTTGTCAATGAAAGAAATCGGTGAACTAAAAGACGGACGGGAC
ATTTATAATGCCATACAAAATTCTATTGATCCATCCACTGTCGAGTGTTA
TTTGAGCGACTCCCAGAAAGAAGCAGTGTTTAAacacaaacaaaagaaac
aaacacTGGAACAAGATAAATTGAGACGAACATTCCAAAACCAATGGCAA
AATATTGTCGAGGAAGAGTTTCCAGATCGATCAGTGGTTCACCTACAAAG
ATATCGTATTTGTGAATGCCCTACCCTCAACTCCAAAAGCAGACCATTCA
AAGACGCTATCCTTACTGTATGGAAACCGACCGAAGACATCAACGAGAAT
TTCAAAGAAGGAGTTAACTTAAAACTCTTCAACTTGAACACCTCTGCTTC
AAGatacaAGCAAACTAGTTGCAATTTTCAACTTTCCACGACCAACACGA
CCAAATATCGACTAATTGAAGATGATCTGTGCGCTGAGAACATTGATTAC
ATTCCACGCCAGGCGACTCCGATAGATGAATTGTACACAAAATCACATGT
ACCTTGTAATGAAATTGACGTCGTGGCTTATGTTCTTTCTGTGGAACGTC
AAAAAAGTACTGAAGAAGTCATGTATCTCTATGATGGCGGAGAGAGGTTT
CTTGCTGTAAAAGTCTGGAATAACCCGCAgAATGTGAAGAACAAGTTGGA
AGGTTGTGTCATTGCTGCAACCAATTTGAGTTGGCAAAAGTTCGCAACAC
CTTCTCGAAATCGTATCATCCATGTTCAGTTCACTGATTTTTCGAATTTC
TCGAAGAATCCCAAAGCTGAGCATCTTCGAAAAGCAATGAACAAATATCA
AAGCTCCTTGACGCAGAGGGCTATACAAGTTGCCAGAAGTAACCTGCAAC
AACAATTACAAACGAACAGTTCGATCAAAAAATTACCTCCTATTTCCAGC
ATTGAAACCACCAATAACAATACCATAACGGTGAAGAAAACAATATCATC
GGATTCAAAACGAGAACAAAGTTTTTGCGACGATCTCCCATCAGAAAAAC
TACTTTCCCGGCAAAAACTTCAAATGAAAAAACGGCTATCTTTGGACCGT
TACCACAACCCGCCGGGGTTGAGCCCTCTACAGACTCGAGAAAATGGAGT
TTTAAAGTCTCAATTTAAACCCCCTTCTACATTGTcctaagaaaaatgaa
atgtttaTATTAGATAGAAGATTGCATGTTAAATTACGTTAATACTGTAC
ATATTGATATACTGTtaataaaaaggaaaatttttattttgagagagtag
attttttatttatttagattattttttaatttagcCTATTATTTAGCCAG
CCAACCCCTCCCTGCTTGTCTCAACTCAAACCAGTACACTTTGAAATcgt
attttcttgattttgatcGGTTTGTTCCCAACCCTTGCCCTTTCCAAACC
CCTTGACACTTTTAACTCTTCCATCTATCTTTGTGTTTTTTAGATAGTAT
AAAAcaatgtaaatttattttgtaaggatttgaaaagcgaaaattga

Run BLAST on NCBI

transcript from alignment at scaffold_245:357886..369473-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054812 ID=TCONS_00054812|Name=TCONS_00054812|organism=Clytia hemisphaerica|type=transcript|length=11588bp|location=Sequence derived from alignment at scaffold_245:357886..369473- (Clytia hemisphaerica)
TGCAGTTAAGATCTCAGAGAGTGCCCTCAAAGCTGCAAAACAAAAATTTA
ATTCAGAAGAGGTCAACCACGCAAACAATTTTTCAATTGCAACCCCATTC
ACTGGGTTCCAAACTGCCAAAGGAAGTGCAGTTAAGATCTCAGAGAGTGC
CCTCAAAGCTGCAAAACAAAAGTTTAATTCAGATGATTCAGAAGAGGTCA
ACCATACAAGCAATATTTCAACTGCAACCCCATTCGCTGGGTTTCAAACT
GCTAAAGGAAGTAGAGTCAAGATCACAGAGAGTGCCCTAAAAGCTGCAAA
ACAAAAATTTAATTCAGAAGAGGTCAACCACGCAAACAATATTTCAACTG
CAACCCCATTCGCTGGGTTTCAAACTGCTAAAGGAAGTGCAGTCAAGATC
TCAGAGAGTGCCCTCAAAGCTGCAAAACAAAAATTTGATTCTGACGAGGT
CAGCAATTCAACAAGTCACCCTTCTACAATAACCCCTTTTACTGGGTTTC
AAACCGCCGAAGGAAAGACCGTTAGTATCTCAGAGGAATCAATTAAAGCT
GCACAATCAAAGTTTGATGCGGACGAGACGAGCAGTCTTTCCAAGTTCAC
AACACCAGGATTTTCTTTGAATGCGCACTCTAAATATCTCAATATGGAAG
CACCCAAAGCAAAGAGAAAGATTCATTATACCACACCTGACCGTAAGAAT
TTATTCCTTCTTCCATTTCAAAAGTGATCACTTTCATTTCGACACAATTT
GTATAAATCATGTCCGAATAAACGTTAAATCTTCTTCTTTTGATTTTCTC
TGAAAAGGAGGCTAAGAATCTTTTTTAGGTCAGATAAAAAAGGAAATGGA
TAAATCGGTATCTTTGTTGATGGTTTCCCAGTGGCACTTAATGTCAGTTA
GTTTTTAATTACCTGAAAATTTACATTATGTCTATTGCCACGATGATGAT
TTAAAGAAACATAAAAATTCGTTCGAGATGAAAGCTAAGGACTTTTTGTA
TATCTTCAGTCTTTTTTGTTTAGAATACCAGTTTGATAGAGCTGTCACGA
TGACAAGACCTCTTTCACCCGCAGTTGCAAGATACAGTACAAAGCAAAAA
GATAAAAGGTACTTACCTGTCCTGTGTGATAGACTCTCGAGTTTATGCAT
GTGTGCTNCAAAGCAAAAAGATAAAAGGTATTTACCTGTCCTGTGTGATA
GACTCTTGAGTTTATGCATGTGTGCTTTTCTGCGACGGAGACGGTAAGGT
TTTGATTTAACTAGATCCTGACCAACTGAGGACGACGGTAAATCAGCACT
TTTACCGTCCTCGGTTTTGCAGGTCAGAACTGCGGGTTATTCCAAATTGC
CTCAGTCACTCTACCGTCCTCAAAAGTGCAAATACATAAACTCGCTACTG
TCCTATAGAGTGACATCAATCTCGAACTTTTTCAACGGTATACTTATTCT
GTATGGTGTATATATTTTGAAAAATTCCAATATCAAATTACTAGCATCTT
TCTTCTTGATGTTTATTTCTTAAAGCCGAAGTGAACAAAAGCCGAGCAAT
GCACAAAACTTGAACAATTCATTCATGACACCTTTCAAAAGTTTAAAGAG
AAGTTGTTCAGCAAAGGAAAGCCAACCGAAAGTGGAAAATAAAAAACGAA
AGAAGAATTTGTTCTCTTACAAACCACTGTTCGTGAATACCATAGCTGAG
GTGAAAGAAGAGGGAATGCAATTCGATGATGATCCTAAGGTTTGTGTAAG
ATCGATACCGTTTTTTTTAAAGAATTTTGTTTCTCAATATTTCAGGAAAA
GAGAAATTTAGTGTAGTAGAAATCTACAAAGTAGATATATCTATATTTGT
CGTATTTAGAAATTTGTGTAAAATCATTCTACCTCAAATTAAAACACAGC
AGATTTAAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTG
TAACTTTTCATAGTCAAATATAATTATGGAAATATTTTTTGCTTGTTTTA
GAGAATCAAAAGCGCTATATTTGAGTGTATTTTTGGTTGAAAAATTCGTC
ATTTTTAGCGGTTGAATTTGCGATTGTAAAAATTGCGCTTTTTTTCTACT
TATGCTATAATGTTCATTTTTACACCAGTGGTAGTTCAACCTTAGGTTAA
GAAGTTTGTTAAATTTCAAGGCGAACAGAAAAGTCCTTCGGAAGATATTT
TCTGTACTTTTCTGTGAATGGCAATGCCCAGAACGTGACGGAGCCCGATT
TTTGAGAACAAATTTATTTTGGCAAATTCGGGCCAAAAACTACATAAAAA
TAGGGTTTTTTGGACTTTGTGCATAATCCTGTCATTAGATTTTTCTGATT
TTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGT
TTTTCCCGGAAAACTCTTATTCGCCTTAAAAACGAACTTTCTTATTTTGA
GGAAATTCCCTTTAACCAAATAAGAAAATATAACTTTTCTCAGGATTGGC
TCATCAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCT
AAAATGTGTCGGAGCCCGATTTTCAAAAAAATATATTTGGGCAAATTTGG
GCCAAAGACTGCCTAAAAATAGGGTTTTTTGGAGGGCAAGATTCTCTAAA
GAATGGCTGAAGTGGTTTTTTCCGGAAAATTCTTATTCGCCTTAAAAACG
GATTTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGC
CTTTCTCAATGTTGACTCATGATTTTTTGCACAATGATTCAAAATGGCAA
TGCCCAAAATGTGAAGGAGCCAGATTTTTAAGGAAAATTTTTTTGGGCAA
ATTTGGGCCAAAAACAGCTTAAAAGGTTTTTTGGGCCTGAATGGTTTAGT
GATTTTCGTATTTGGAGGAAATTCCTTTTTACCATTTTACATTATTCAAC
ACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTT
TTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATG
TTGCTTGTTTTGTATGGATTCATTAGATGTTATGACTGTGTATTTTGTTT
TGTAGGATGAACATATTCGCAAATCAAGGTTCAATGTCGATGGAATTTAT
CAATCGAAGAAAAAAACGAAATCAAGTTTTCCGGAATTTGTTAATTATTG
CTCTCCTTCAGTTTATTCTAGAAAAGAGGTAACACTTTATATCTAACAAA
TAAAACAAAACTTAATCAGAATAAGCTCATCTTCTTGATTTCGACATTCA
AAATACAAAAAAAGAGAAAGATGGTGAAATTTCTGAATATTTGGACTTTA
TCGTGTCATCGTCAACGATTGTGAACTTTGTTTTCTTTATTTACCTCATA
AATAGCCATAGTCAAGTAGTCCAAAGCGTCAGCATCATAAACAGGGCTTT
CCGGTTTGAACGAGCCTCCTGTTTCCTTCAGTCCNGGTCCAAAGCGTCAG
CATCATAAAAAGGGCTTTCCCGTTTGAACGAGCCTCCTGTTTCCTTCAGT
CCATAGAAAGCCAACCAAAAAAAGCAATTGAAAGATAGTATAAAAATCTT
AAATATAGACATTCCAAATTAAATAAACTAACCTCTTCCTTATCTTATTT
CAGCTACAGGAATATGGTCTTCAAGACTCCGTAATTAATCTGAGTGGAGA
CAGTGCTTTGGATTTTACATTTGATGCAAAAAAGTATTTCAGCTTGCAAG
TTGCAATTTCTGGCAAATTGGCTTTATGTTGTGGATTCCAAATAGTCATT
AATGAAAAGGTTGAAATTGGGCTGAATGAAATCAAAAGGTATTTGCCATC
AAAATCCCTTTAGGGGGAGGTTGATTATATAACCACCCTTGGAAACTTGC
CCTTGCCATAAAGAATTCATGAAGAAAACAGAGAACTGAGAATAGTCTTA
GGGTTATGGCCATTCTTTTATTTTCTGATGGCTTTTCCATGAATTTCTTT
TTTCAGTGCATTTATGAAGAGCAATGATATCGACAAATCGTTGGTACCAG
AAAGGTGGATAGAGAACCATTTCAAATGGATTGTATGGAAATTAGCCGCT
TACGAACGACGCTTTCCTGGCCAGTTTGCTAACAAGTATAAACAACACCT
TTATTGTTAAGCTAAAAAGACATTGACAGGACCTTTATCCATTCTAATCG
GGGTCTTATTTCGGTCCAGTAAAAGATGAATTTCGCCGGTCCAATTCATT
AAACAATTCGCTGGTCTTAAACATCTTGCTAGTCCAAGTTTATATTCATA
TTAAACAACAAATAATCTTACTAATAAATCTTAAGCCGAGGAAGCAATTT
GCCATTCGCCAGTCGACTGAAAACTCCTGTTTCACAACTTTTCTCAATAA
ATTTCCAGATGCTTGACACCTTTTATTGTGATGGAGCAACTCAGATATCG
CTACGATAAAGAGCTTGAAAAAGCAGAACGGTAATTTTTTTCTGCATGAG
TTTCATTTCAAGTCATGAGAACTCAATCACTCAATCATATACTAGACTTT
GTAGTTTTTTTCTGTACGCAGTAAAGTCTACTTTAAGGGAACTTATTTTG
GCGGGAACTAATTTTGACAAGAGGCAAAAATCCTGAAAATTTTTAATTTT
GGCGAGAACTTATTTTGGCGATGATGAATTTTATTAATTTTAGTGGGAAC
CTAATTTTGGCGAATGACAGCGTAAATCTGTTTTATTTTGCCTTATTTGC
AGCTTTTTTGTGAACTCAAGAAGTTATTTAGGCAAAATACCAAAAAAATT
AATTTTGGCGAGAACCTATTTTGACGAGTGAGCAAAATATTTAATCTTGG
CGGGAGCTAATTTTGGCGAAAGTTCCCTTAAGGTATTTCACTTTGCGGGT
TTAAATGTTTGGAGCCAAAGCTATACACGAGGGACTCGCTAATGTACCAT
TCACTTTGTATTTTGATACACATTTCTGTCATCTTACAATTCTGCTGGTA
TGTACACCTTTCATTTCATTTTGTTCTATCAATCTCCCCCTCTCTAGGTC
ATGCTTGAAGAAGATTTATGAACGCGATGACATTTCAACTCGTAGGATGA
TTCTCTTTGTTAGTGATATATTGCATGCTGTTTCAAACAATGACCAAAAG
TGCAAAGTAAGTTGTAACGTTCGTATTTTTTAGTTAATCTCAGCAAAATA
GACATTCAGGGGAATTAGGCTAATGCGTAACGCTTAAACGCCTGAGTCCA
CTCGGTCAGGGTGTTACACAATAAATAGATGAAGCATTCCGAAAGGAAAA
GGGATATTGAAAAGTGTCTCAAAACGAAGGATATGGAAAGAAGGGGCATT
GACATGAAACCATCTGGTCAAGATTTCCTCCCCTTTCCCTTCTGTTAGGG
ATTCTCATTTCTAAATAATGAGAGAATGCCAACTCAAAGAAGGGCGTATC
AGAATTCCTTAGTCATTTTTTACACATTTTTAGACTGTGATCAAACTATC
AGATGGTTGGTATGAGATCAAGGCTGGTCTAGATCAACCTTTGAGTGCAT
TCTTGGACCACAAGAAAATTGCCATCGGAACAAAACTCTGTGTGTACGGT
GCTGAATTGATCGGATCCACGCAAGCCTGTCCTCCTTTACAGGTAAATAA
TTCTTTAACTTATTGGTCCTTGTAATATAGAAGCCAGTTAAAAAAGTGAC
ACTAACTATTTGCACTGACTGGAAAACAGAAGATCTACTAAGACTAAAAA
ACTACAAAATCTCACCTACCTTTTGATTGTCTTTCCAATATTTCTTTAAA
GGCACCTGAAGATTTGATGTTGATGTTATCAGCCAATTCCACACGAAGAG
CATCATGGGATACTAAGCTTGGATTTCAGCCAATCAAACAAGCCTTTGCT
GTCCCTTTGACGTCGCTATATTCGGACGGGGGTTCTGTTGGTTGTGTCAA
TATCACTATTCTTCGAAAATACCCTACTCAAGTAAGATTTTTTTGGTTTG
CTAATTTTGTTTAGTTCGTAAATGTTAAGTGTTTCTACTCGAAGTTTGGG
TGCTTACAGGTGCTTTGATCAATTCTTTGCCCAATAACTACGACGACCAT
ATGACAATTTCAGAAAAAAAAAGATCAAACTTAATCCCAAAATGATTTTG
CAATGAATCTCTGTGGAGACAGATAAAAAACGACAATATCCCATTTTTGA
AAATATTTTTAACGTAATACTCTTTTACACATTTCAGTGGATGCAGAAAG
AGGGCGGACGTTGCATCTTCCGAAACCTCCAACAAGAAGAGGAGGCGAAG
AAGAAATACGAAGAACAAAAACAAAAGAAAATGGAAACACTCTACGCATC
CATTCAAAAAGAATTCGAAGAAACTACCAATAAAGGTTTGCGAGGAATCT
GTTATCTTTTATGTTCGACGTTTAAAGACAAGTTGGGTTTATTTGGAGTT
TTCACAATCTGTTATTTGATTTGGTTGGTCGTTAACCTGTAATAAAACAT
TTTTTTAACTTTTTCTAAAGAATGCGTCATCTCTATCACTTTAAATGACC
AAATGGCCAATTAGTGGAAGTGTGTTATAAAACCTCCAACTGATCCCAAT
GAATTGCCTTTAATGTATGTTTGAATAAAATAACTGTAACTTCAGGTAAC
CTGACCTACACTGGGGTTCGTAAATATCTTCAATTTTAATAAACTGGATG
ATCTATTTCCCGGAGGGATGGATATACCCCCAAAAATAAGGTTTTCAGAG
CAAATGAAAGGACTTTGTTGGACAACTGCAACAATTCTCTAAAAATTAAG
AAACGAGGGCCCTAATAAGGTCTGGGATTTGAAAAGTTCATAAACAAAGA
TTTTTTTGTTCTTAAGGAACGAAACGTAAAAGACGAAGTTTGTCAATGAA
AGAAATCGGTGAACTAAAAGACGGACGGGACATTTATAATGCCATACAAA
ATTCTATTGATCCATCCACTGTCGAGGTAAAGAGATTTCTTTATACGTCA
TGATTAGTTTAGTCTGTCATCATCTTGTATTGCGAAGCCTCGTTATTTAC
TCCATTGTTCAAGGTTAATTTTGGGTATACATTTTCACAAATCCGGAGTT
ATCGTAAGACTTCTGTTTTTCCCTAGTGTTATTTGAGCGACTCCCAGAAA
GAAGCAGTGTTTAAACACAAACAAAAGAAACAAACACTGGAACAAGATAA
ATTGAGACGAACATTCCAAAACCAATGGCAAAATATTGTCGAGGAAGAGG
TAACTATTTTGCTTGTATGATACCGAGATCTTATCTCCATTGCAATATTG
TATAACAGATTTAGCTCTAGAGAGCCATAATTTGAATTGCGTTCTCAACT
CAATGATAAGCAAGAACTAAGTGAACTAGTTATCGATTACACCAAAGAGC
CGAAAAACTGCTGATTGTACAATCATTCTCTCCCCTTCTTTTTTTTAGTT
TCCAGATCGATCAGTGGTTCACCTACAAAGATATCGTATTTGTGAATGCC
CTACCCTCAACTCCAAAAGCAGACCATTCAAAGGTGAAAGACGGTTTAGA
TACAGAACTCTTAATGAAATTATTTTGTATCCCCTTCTTTATGCTAACGT
CAATTTACCCAAAAAATTTAGCTCTGACTGTTTCCTGCTCTACTGTTGGC
GAGACACACACACATGCCTTCTCATAACGTTATGAAGTGTCACAATTGTA
AACTTTTTGTTGAAAAAATGTTTATCTTTTTATATCGGAAACATTCTTTG
TCTTTCAAAATACGGGTATAGAAAACTTCGCTCTAGCCATCGCCATCATA
AAAATCAGAAAGATTGGATTCAGCAAACGGATTTTCGTCGCCAGGTTTCC
GGGCTAACGTTACTTTTAATCCCATTTCCTTCCGTGTAGAATTATTTACA
TGCGTGTATGAAAAGTTAGTATCAGGGGCTAGAGAATTAGAACCCGGATA
GGTAGGGAGGCATATTATAAACATTGATGAGTTATTGCTGGTATAGAATT
CGCAATACCTTGACAAGCAATAACCACGGGTTCACGACTTTAACAATAAT
TAAACGTTACCAGATAACACGTTTTTTGATTATGTTTTCAGACGCTATCC
TTACTGTATGGAAACCGACCGAAGACATCAACGAGAATTTCAAAGAAGGA
GTTAACTTAAAACTCTTCAACTTGAACACCTCTGCTTCAAGGTGAGAAGA
ATTGTGATTGGTTTATTGCATTTTTGCATTCCCATATTTGAAAATTGTCG
AAAGGTAGTATAGAACAAATTAAAAACATTTTAAGGATTTGCGCACTTTA
AAACAACCAATTTCTTAGAAAAATGGACAAAATTTTTCACAAAATGGTGA
AAAATAAGAACATGTTAGGAACATTTTTAGGCTTGAAAGTCAAAAAGATA
AGAACATCCAAAGGCTTGAAAATTTTGGATGATCTTATAAAAAAACGTGT
ATGCAAGTATTTATATTCTTCTTCTATTTTCTCTTTTTTCTTAGATACAA
GCAAACTAGTTGCAATTTTCAAGTAAGTAATATTATTGACATACAATTTT
GCTCCTGGATGAACCTCCGTTTATTGATAACGATTTATCGAAAAGTTGAG
AGTCATGTTTATTAAGCCAATTCATCTAAAATCACTATTTATCACTTTCT
TTCAATAGCTTTCCACGACCAACACGACCAAATATCGACTAATTGAAGAT
GATCTGTGCGCTGAGAACATTGATTACATTCCACGCCAGGTAACGACGTC
ATTTCCGAAGCCTGTCATAAGTAATTGTATCTGAACCCTACCTGAAATAT
TACATATTATGTNTCCGAAGACTGTCATAAGTAATTGTATCTGAACCCTA
CCTGAAATATTACATATTATGTGCAGAGGGATCTGAGCGGTCATTTCAAT
CCCCTGTTTATACATCCCTCTATTTTTTAAAGAATCCTACACCATTCACA
TTGCCAAATTTTAAATATATACCAAATTATTTAAGAAATATTAGATACCA
TAAATATTTTAACTCAAATTTTGTTCACCTCTCTTAAAGCTCGAACCCAA
TTTCTTCGTAAAAAAAGTCCCACCCACACTTATAAAGACTTAGACTCCCA
TTTAAAGGAGGGGGTGTTCACTCTATGTTACCTCGCCAAGAATAGGGACG
AGGTGGAGTTTTTACAAGCTCTTTTTTGATTTGGTTGGTCGTTAACCAGT
AATAAAACAATTTTGCTACTTGCTAAAGAGCGTGCCATTTTTATTACATC
TAGTTATTAAAGTATCTTATAAAAACTCCATCTCATCTGCAAGAATTAGA
TTTTGCGCTCACCTGAATTTGTTACACAAAAGGGGGATATAAAGTGTACT
TGTATATAATTATTTCTTATAACTTATTTTGTTGCACCGATAAAGGCGAC
TCCGATAGATGAATTGTACACAAAATCACATGTACCTTGTAATGAAATTG
ACGTCGTGGCTTATGTTCTTTCTGTGGAACGTCAAAAAAGGTTTGAAACT
CTCTTTCAGTTCAATGAGTTTGTTAAAGTTATTCGAGTATTAGTGCTAGT
GAATAGTTGGGCCATTGAGGCTTCACTCAATCAAGGCTGATNCTTATAGA
AGGGTGCTAGTGAATATTTGGGCCATCGAGGCTTCACTCAATCAAGGCTG
ATTCTATTACAAGCTGACCATTTTGACAATTTTTTTATATTTGCTTTTAA
AATTGTGTTTCTAGTACTGAAGAAGTCATGTATCTCTATGATGGCGGAGA
GAGGTTTCTTGCTGTAAAAGTCTGGAATAACCCGCAGGTAAAAACTATTT
TAAATTCTCACAGATCTGTAGGACTTTTTCAGCCAGTGGAGGTAGAAATA
ACGAATTGAAACTCTGTTTTCCTGAATTTAAATTTTCGATTTCTTTTAGA
ATGTGAAGAACAAGTTGGAAGGTTGTGTCATTGCTGCAACCAATTTGAGT
TGGCAAAAGTTCGCAACACCTTCTCGAAATCGTATCATCCATGTTCAGTT
CACTGATTTTTCGAATTTCTCGAAGAATCCCAAAGCTGAGCATCTTCGAA
AAGCAATGAACAAATATCAAAGCTCCTTGGTAATTTTTCCCTCTTTTGAC
TCAGTAACGCAGAATGGTTAGAATGCATACCATAACATAAAGACTCTTCT
TCATTCGAAGTTTATATCNTTCTTTTGACTCAGTATCAGTAACGCAGAAT
GGTTAGAGTGCATGCCATAACATAAAGACTCTTCTTCATTCGAAGTTTCT
ATCGTTAATTGTTTCTGATCAACAAACTCAGTTGCTTGCTAAAGGTCTGG
AGCCACTTGAAACAAATTCAATTAAAATGAAACATAGACAAATTGCAGTT
CAATTGCTAAACTTTGATCGAGTGGCCCAACCGCCTCAGAGAAATCTCAA
CAATAAACAATTTTTTTTCACTGTAACTACAATAAAAGGTTCAAAAGTTT
TCTGCAACTGTTTCTTTCTAAGCAGAAACTGTTGATTGTATATGTTTTCT
TTCCGTCATTTTAGGTGGGGCCACTAGCAACTTTTCCGTCAAAGTGTAAC
ACTTTTCAATGTTTCTGTTTGATGAAAATGTTTCAAGTGGCCCAGACAAG
TTCATTTTCAGTATTTTCTTAAACTAACGTAGTTTTTCTTTCATTCTAGA
CGCAGAGGGCTATACAAGTTGCCAGAAGTAACCTGCAACAACAATTACAA
ACGAACAGTTCGATCAAAAAATTACCTCCTATTTCCAGCATTGAAACCAC
CAATAACAATACCATAACGGTGAAGGTACTAACTGCAATTTTTGCAAATT
TCACTCGTAGACAATTGTTTGTTAACTACAGTCTAAACGATGTAGATATT
TACAATTCCGAAAATGAAACTTCCCAGCTCTCAGTTTACAAAGTTTAAAA
GTTTGATATTCAATTCAAAATAATATTTTAAAGAAAGAGGCTATGGAGAA
AAGAATTCATTGGGGTATGGATCCGTTATTTACCAATTTTTTTTTTATAT
AAGTTTATTTTTTCATCTTCATTTCAGAAAACAATATCATCGGATTCAAA
ACGAGAACAAAGTTTTTGCGACGATCTCCCATCAGAAAAACTACTTTCCC
GGCAAAAACTTCAAATGAAAAAACGGCTATCTTTGGACCGTTACCACAAC
CCGCCGGGGTTGAGCCCTCTACAGACTCGAGAAAATGGAGTTTTAAAGTC
TCAATTTAAACCCCCTTCTACATTGTCCTAAGAAAAATGAAATGTTTATA
TTAGATAGAAGATTGCATGTTAAATTACGTTAATACTGTACATATTGATA
TACTGTTAATAAAAAGGAAAATTTTTATTTTGAGAGAGTAGATTTTTTAT
TTATTTAGATTATTTTTTAATTTAGCCTATTATTTAGCCAGCCAACCCCT
CCCTGCTTGTCTCAACTCAAACCAGTACACTTTGAAATCGTATTTTCTTG
ATTTTGATCGGTTTGTTCCCAACCCTTGCCCTTTCCAAACCCCTTGACAC
TTTTAACTCTTCCATCTATCTTTGTGTTTTTTAGATAGTATAAAACAATG
TAAATTTATTTTGTAAGGATTTGAAAAGCGAAAATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034529	XLOC_034529	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_245	supercontig	scaffold_245:357886..369473 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.08789	0	0	0	0	0	0	0	0	0	0.0871371	0	0	0	0	0.140671	0	0.00139387	0.00128143	0	0	0.469328	0	0.917133	3.02556e-10	0	0	0	0

Blast

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BLAST of TCONS_00054812 vs. Swiss-Prot (Human)
Match: BRCA2 (Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=3)

HSP 1 Score: 387.882 bits (995), Expect = 1.168e-111
Identity = 241/652 (36.96%), Postives = 382/652 (58.59%), Query Frame = 2

Query:  830 PSVYSRKELQEYGLQDSVINLSGDSALDFTFDAKKYFSLQVAISGK-LALCCGFQIVINEKVEIGLNEIKSAFMKSNDIDKSLVPERWIENHFKWIVWKLAAYERRFPGQFANKCLTPFIVMEQLRYRYDKELEKAERSCLKKIYERDDISTRRMILFVSDIL-----------HAVSNNDQKCKTVIKLSDGWYEIKAGLDQPLSAFLDHKKIAIGTKLCVYGAELIGSTQACPPLQAPEDLMLMLSANSTRRASWDTKLGFQPIKQAFAVPLTSLYSDGGSVGCVNITILRKYPTQWMQK-EGGRCIFRNLXXXXXXXXXXXXXXXXXXXTLYASIQKEFEETTNKGTK--RKRRSLSMKEIGELKDGRDIYNAIQNSIDPSTVECYLSDSQKEAVFKHKQ----KKQTLEQDKLRRTFQNQWQNIVEEEFPDRSVVHLQRYRICECPTLNSKSRPFKDA-ILTVWKPTEDINENFKEGVNLKLFNLNTSASRYKQTSCNFQLSTTNTTKYRL--IEDDLCAENIDYIPRQATPIDELYTKSHVP-CNEIDVVAYVLSVERQKSTEEVMYLYDGGERFLAVKVWN--NPQNVKNKLEGCVIAATNLSWQKFATPSRNRIIHVQFTDFSNFSKNPKAEHLRKAMNKYQSSL 2710
            PS  S K+L  YG+    I ++  +A  F F  + YF  +   +GK + L  G  ++ +   + G  E   A   +  +D  L+   W+ NH++WI+WKLAA E  FP +FAN+CL+P  V+ QL+YRYD E++++ RS +KKI ERDD + + ++L VSDI+           +  S+ D +   +I+L+DGWY +KA LD PL A L + ++ +G K+ ++GAEL+GS  AC PL+APE LML +SANSTR A W TKLGF P  + F +PL+SL+SDGG+VGCV++ I R YP QWM+K   G  IFRN ++EE+   KY E +QK++E L+  IQ+EFEE     TK     R+L+ +++  L+DG ++Y A++N+ DP+ +E Y S+ Q  A+  H+Q    KKQ   Q ++R+  ++  Q   +E+   R V  + + RI       S S+  KD+ IL++W+P+ D+     EG   ++++L TS S+ K    N QL+ T  T+Y+   + D++  +   Y PR+     +       P C+E+D++ +V+SV ++      +YL D     LA+K W   N   +K  +   +IAA+NL W+     S++ ++ +   DFS FS +PK  H ++  NK ++++
Sbjct: 2532 PSACSHKQLYTYGVSKHCIKINSKNAESFQFHTEDYFGKESLWTGKGIQLADGGWLIPSNDGKAGKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPKEFANRCLSPERVLLQLKYRYDTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANISETSSNKTSSADTQKVAIIELTDGWYAVKAQLDPPLLAVLKNGRLTVGQKIILHGAELVGSPDACTPLEAPESLMLKISANSTRPARWYTKLGFFPDPRPFPLPLSSLFSDGGNVGCVDVIIQRAYPIQWMEKTSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENTTKPYLPSRALTRQQVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKKQAQIQLEIRKAMESAEQ---KEQGLSRDVTTVWKLRIV------SYSKKEKDSVILSIWRPSSDLYSLLTEGKRYRIYHLATSKSKSKSERANIQLAATKKTQYQQLPVSDEILFQ--IYQPREPLHFSKFLDPDFQPSCSEVDLIGFVVSVVKKTGLAPFVYLSDECYNLLAIKFWIDLNEDIIKPHM---LIAASNLQWRP---ESKSGLLTLFAGDFSVFSASPKEGHFQETFNKMKNTV 3166

The following BLAST results are available for this feature:

BLAST of TCONS_00054812 vs. Swiss-Prot (Human)

BLAST of TCONS_00054812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BRCA2	1.168e-111	36.96	Breast cancer type 2 susceptibility protein OS=Hom...	[more]

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TCONS_00054812 (transcript) - C. hemisphaerica