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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054809 ID=TCONS_00054809|Name=TCONS_00054809|organism=Clytia hemisphaerica|type=transcript|length=2167bpRun BLAST on NCBI protein sequence of TCONS_00054809-protein >TCONS_00054809-protein ID=TCONS_00054809-protein|Name=TCONS_00054809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp MASLEVESADVIRLVQQYLKENNLRRTLQTLQEETTITLNTVDSVESFVARun BLAST on NCBI transcript from alignment at scaffold_245:343921..357004- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054809 ID=TCONS_00054809|Name=TCONS_00054809|organism=Clytia hemisphaerica|type=transcript|length=13084bp|location=Sequence derived from alignment at scaffold_245:343921..357004- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:343921..357004- >TCONS_00054809 ID=TCONS_00054809|Name=TCONS_00054809|organism=Clytia hemisphaerica|type=CDS|length=20085bp|location=Sequence derived from alignment at scaffold_245:343921..357004- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054809 vs. Swiss-Prot (Human)
Match: SMU1 (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2) HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0 Identity = 388/512 (75.78%), Postives = 452/512 (88.28%), Query Frame = 2
Query: 227 SLEVESADVIRLVQQYLKENNXXXXXXXXXXXXXXXXXXVDSVESFVADINNGHWDIVLQAIQSLKLPDKTLIDLYEQIVVELIELRELGAARSLLRQTDPMLMLKKHSADRYLRLENLLARSYFDPREAYPEGSSKEKRRNAIAQALAGEVNVVPPSRLMALLGQALKWQQYQGLLPPGTSIDLFRGKAAMKGAEEEKCPTYLSKTVKFGTKSHPTACVFSPDGQYLVTGSADGFIEVWNYQTGKIRKDLKYQAEDNFMMMDDAILTLSFSRDSEMLVSGSQDGKIKVWKIQTGQCLRRLENAHSKGVTYAVFSKDSSQILSTSYDYLIKIHGLKSGKTLKEFRGHTSFVNHATFSSDNHQIISCSSDGTIKIWNIKSSECLHTFQGGIGGSAG-GVRCNSVHLQPRQPDHFILCNKSSTVFVMNMQGQVVRTFTSGKREGGDFVCCSISPNGEWVYCIGEDRVLYCFSTSSGKLERTMVVHEKEALGAVHHPHQNLVATFSEDGTMKLWK 1759
S+E+ES+DVIRL+ QYLKEN+L R L TLQEETT++LNTVDS+ESFVADIN+GHWD VLQAIQSLKLPDKTLIDLYEQ+V+ELIELRELGAARSLLRQTDPM+MLK+ +RY+ LENLLARSYFDPREAYP+GSSKEKRR AIAQALAGEV+VVPPSRLMALLGQALKWQQ+QGLLPPG +IDLFRGKAA+K EEEK PT LS+ +KFG KSH FSPDGQYLVTGS DGFIEVWN+ TGKIRKDLKYQA+DNFMMMDDA+L + FSRD+EML +G+QDGKIKVWKIQ+GQCLRR E AHSKGVT FSKDSSQILS S+D I+IHGLKSGKTLKEFRGH+SFVN ATF+ D H IIS SSDGT+KIWN+K++EC +TF+ +G +AG + NSV L P+ P+HF++CN+S+TV +MNMQGQ+VR+F+SGKREGGDFVCC++SP GEW+YC+GED VLYCFST +GKLERT+ VHEK+ +G HHPHQNL+AT+SEDG +KLWK
Sbjct: 2 SIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKS-LGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 512 The following BLAST results are available for this feature:
BLAST of TCONS_00054809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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