TCONS_00054800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054800
Unique NameTCONS_00054800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054800 ID=TCONS_00054800|Name=TCONS_00054800|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TTGATAAAACGTAAAAAATGCTTCATCGAACTTGATTTACACGTACTTGA
CAACTGTTATAGTTTCATAGCAAGCAGTACTTACAATATCATTAGTTTGA
TTTTCGAGGGTCTCATCACATCACAAACAAGTTTAGGGTAATCTGTCAAA
TTTACGTGAAAAAAACTTCCAGAAGTATGCGTTACTTGgtttttatttcg
atttcttTGGTGTTTGTTGTTATGGAAACCGATTGTTTACTTTGTGATCC
CATGCCAAAATGCACGGATTTCGAATGCTTTGATCACGAGCCAGAATGTG
GAGAAGgagGTGTTGTTTCAAAGACATTGACTTGTGGATGTTGTTTAGAA
TGTGCCAAACAGGTGAATGAAGAATGTGGTGGACCTTATCATTATTATGG
GAGGTGTGACCATGCGTTGGTTTGTGTTCCTAAACTGGCTGTTCGAGATC
GATACCCTGTCGGTGTATGCAAATCTAAgGACAATGCGCTCagagaaatt
ttgaagaaattccgTTGATCTTATTGGTGGAAACATTTATATACAGAAAC
CGATTTATGTAAAGGACTAAATATTTACAGTGTAAGACCAGTGCTACAAA
TGAACAGAGCACTATGGGTAAAGAAAATCGACAAGATATTGCATTACGTT
ACATATGacataatattttttcaaaagttcacACCCCTGGTGAAAAATgt
taacaaattaaaaaatcaagcgATAACGTAAGGATGATTCTTAACTGCCA
AAACATCACTTCTTGGGATTTGTAACTCTCTAAATGTATACAAGTGTACA
AAATCTATAATTTTCTATAAAATGTTAGTTGTCTATACTGGAAATTACCA
AAGATATCATATGTCATAACCACCGGGTCAAGCCGTTATCGGGTACTGCA
ATGTCCGGTTTTGAgtcatctttcaaattttctcgTCTTGTTAACACTTC
TTTGCAACTTCGGACGATTACTCgacaaaattcttcatttttcagaaAAG
GCTCCTACAAAGAAAAGTCGAGAATCGATGATGATTGTTGTAGGTCATCA
AAAAATATACCCCTACTTCTGTGCCCTTGTAGCCTGGCGGTGCTTCGTGC
TACCAGgtgggaaaaaaaattctagaacAAATTTCTATGGGAACATAAAA
ttgttttcagcaaaaaaacagACAGGGGATTGTTTGTAGGGCATTTTATC
ATTCATTGTCAATAAGAATTGTTTTTGATCAAACCTTCCAGTAAGGAGAG
GGTCCCGAGGGGGCTGTGACACATGGTTGTGTCagtactttgatattttt
taaacaaaataagtCTTACCATAGACGTTCTTTTTCCCTTCTTTGGGATA
GGTATACTTGCCAAAAAAGCATCAACACTGATTATCGTTAAACAAAACAC
CAGAATGGCAAACTTTGCCATATTTCTCTATGTATAGGAAGAGtttgcaa
atattttttatccctctttttttttgtaactGTAATGTTTTATATCCGAC
TTTTGTAAACGCTGAAAAAGATAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00054800-protein

>TCONS_00054800-protein ID=TCONS_00054800-protein|Name=TCONS_00054800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MRYLVFISISLVFVVMETDCLLCDPMPKCTDFECFDHEPECGEGGVVSKT
LTCGCCLECAKQVNEECGGPYHYYGRCDHALVCVPKLAVRDRYPVGVCKS
KDNALREILKKFR
Run BLAST on NCBI

transcript from alignment at scaffold_245:157288..159419-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054800 ID=TCONS_00054800|Name=TCONS_00054800|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at scaffold_245:157288..159419- (Clytia hemisphaerica)
TTGATAAAACGTAAAAAATGCTTCATCGAACTTGATTTACACGTACTTGA
CAACTGTTATAGTTTCATAGCAAGCAGTACTTACAATATCATTAGTTTGA
TTTTCGAGGGTCTCATCACATCACAAACAAGTTTAGGGTAATCTGTCAAA
TTTACGTGAAAAAAACTTCCAGAAGTATGCGTTACTTGGTTTTTATTTCG
ATTTCTTTGGTGTTTGTTGTTATGGAAACCGATTGTTTACTTTGTGATCC
CATGCCAAAATGCACGGATTTCGAATGCTTTGATCACGAGCCAGAATGTG
GAGAAGGTAAGGAAAAACCTGTAAATATCCTCCCTTTTTATAAAGAAACT
GTAATCTGGGAGCTCGGCTGTTGTTATTTTAGACCCTTGAAACCTCAAAT
TGTGTTCTTTATTTCAGTTAGTTTTTATGAAAATTTTTACTACTTTGAGT
TTTTACAAGCTCTTATTTGATTTGGTTGGTTGTTAACCAGTAATAAAAAG
ATTTTGTTACTTTTTCTAAAGAACGCTTCATTTTTATTAATTCAAATGAC
CAATTATTAAAGTATCTTATAAAAACTCCATCTCATCTGAAATTCTGACA
TAACTTTTTCAAACAGTACGTTTTCATATTTCGTATTGTCGAGGCTAGTT
GTTTGCTGTTCAACAGATCTGACAGAGATCCTTTTTTTCTTCAGGAGGTG
TTGTTTCAAAGACATTGACTTGTGGATGTTGTTTAGAATGTGCCAAACAG
GTGAATGAAGAATGTGGTGGACCTTATCATTATTATGGGAGGTGTGACCA
TGCGTTGGTTTGTGTTCCTAAACTGGCTGTTCGAGATCGATACCCTGTCG
GTGTATGCAAATCTAAGTGAGTGACCACTAAACCTTTTTTGGGTTAACTC
AAACTTATAGCTCGTGATTGTATCACGTCCATCAGTAAAATCAAAAAGTG
GTGCTGGGTATGAGATTGATTTATTGGACAAATCACGTAGTTTTAATTCA
CGTTTAATGTATTTTCGTACTATAATCATTGTTGCGCATAAATTAATTAA
TACTAAATCAAATTCATATTTTTTCTATTTCAGGGACAATGCGCTCAGAG
AAATTTTGAAGAAATTCCGTTGATCTTATTGGTGGAAACATTTATATACA
GAAACCGATTTATGTAAAGGACTAAATATTTACAGTGTAAGACCAGTGCT
ACAAATGAACAGAGCACTATGGGTAAAGAAAATCGACAAGATATTGCATT
ACGTTACATATGACATAATATTTTTTCAAAAGTTCACACCCCTGGTGAAA
AATGTTAACAAATTAAAAAATCAAGCGATAACGTAAGGATGATTCTTAAC
TGCCAAAACATCACTTCTTGGGATTTGTAACTCTCTAAATGTATACAAGT
GTACAAAATCTATAATTTTCTATAAAATGTTAGTTGTCTATACTGGAAAT
TACCAAAGATATCATATGTCATAACCACCGGGTCAAGCCGTTATCGGGTA
CTGCAATGTCCGGTTTTGAGTCATCTTTCAAATTTTCTCGTCTTGTTAAC
ACTTCTTTGCAACTTCGGACGATTACTCGACAAAATTCTTCATTTTTCAG
AAAAGGCTCCTACAAAGAAAAGTCGAGAATCGATGATGATTGTTGTAGGT
CATCAAAAAATATACCCCTACTTCTGTGCCCTTGTAGCCTGGCGGTGCTT
CGTGCTACCAGGTGGGAAAAAAAATTCTAGAACAAATTTCTATGGGAACA
TAAAATTGTTTTCAGCAAAAAAACAGACAGGGGATTGTTTGTAGGGCATT
TTATCATTCATTGTCAATAAGAATTGTTTTTGATCAAACCTTCCAGTAAG
GAGAGGGTCCCGAGGGGGCTGTGACACATGGTTGTGTCAGTACTTTGATA
TTTTTTAAACAAAATAAGTCTTACCATAGACGTTCTTTTTCCCTTCTTTG
GGATAGGTATACTTGCCAAAAAAGCATCAACACTGATTATCGTTAAACAA
AACACCAGAATGGCAAACTTTGCCATATTTCTCTATGTATAGGAAGAGTT
TGCAAATATTTTTTATCCCTCTTTTTTTTTGTAACTGTAATGTTTTATAT
CCGACTTTTGTAAACGCTGAAAAAGATAGAAA

Coding sequence (CDS) from alignment at scaffold_245:157288..159419-

>TCONS_00054800 ID=TCONS_00054800|Name=TCONS_00054800|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_245:157288..159419- (Clytia hemisphaerica)
GGACAATGCGCTCAGAGAAATTTTGAAGAAATTCCGTTGAGAGGTGTTGT
TTCAAAGACATTGACTTGTGGATGTTGTTTAGAATGTGCCAAACAGGTGA
ATGAAGAATGTGGTGGACCTTATCATTATTATGGGAGGTGTGACCATGCG
TTGGTTTGTGTTCCTAAACTGGCTGTTCGAGATCGATACCCTGTCGGTGT
ATGCAAATCTAAATGCGTTACTTGGTTTTTATTTCGATTTCTTTGGTGTT
TGTTGTTATGGAAACCGATTGTTTACTTTGTGATCCCATGCCAAAATGCA
CGGATTTCGAATGCTTTGATCACGAGCCAGAATGTGGAGAAGGGACAATG
CGCTCAGAGAAATTTTGAAGAAATTCCGTTGAGAGGTGTTGTTTCAAAGA
CATTGACTTGTGGATGTTGTTTAGAATGTGCCAAACAGGTGAATGAAGAA
TGTGGTGGACCTTATCATTATTATGGGAGGTGTGACCATGCGTTGGTTTG
TGTTCCTAAACTGGCTGTTCGAGATCGATACCCTGTCGGTGTATGCAAAT
CTAAATGCGTTACTTGGTTTTTATTTCGATTTCTTTGGTGTTTGTTGTTA
TGGAAACCGATTGTTTACTTTGTGATCCCATGCCAAAATGCACGGATTTC
GAATGCTTTGATCACGAGCCAGAATGTGGAGAAGGGACAATGCGCTCAGA
GAAATTTTGAAGAAATTCCGTTGAGAGGTGTTGTTTCAAAGACATTGACT
TGTGGATGTTGTTTAGAATGTGCCAAACAGGTGAATGAAGAATGTGGTGG
ACCTTATCATTATTATGGGAGGTGTGACCATGCGTTGGTTTGTGTTCCTA
AACTGGCTGTTCGAGATCGATACCCTGTCGGTGTATGCAAATCTAAATGC
GTTACTTGGTTTTTATTTCGATTTCTTTGGTGTTTGTTGTTATGGAAACC
GATTGTTTACTTTGTGATCCCATGCCAAAATGCACGGATTTCGAATGCTT
TGATCACGAGCCAGAATGTGGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034521XLOC_034521Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054800-proteinTCONS_00054800-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054800-exon-scaffold_245-1575043694:159114..159419TCONS_00054800-exon-scaffold_245-1575043694:159114..159419Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1575043694:158554..158725TCONS_00054800-exon-scaffold_245-1575043694:158554..158725Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1575043694:157288..158336TCONS_00054800-exon-scaffold_245-1575043694:157288..158336Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1510915933:159114..159419TCONS_00054800-exon-scaffold_245-1510915933:159114..159419Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1510915933:158554..158725TCONS_00054800-exon-scaffold_245-1510915933:158554..158725Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1510915933:157288..158336TCONS_00054800-exon-scaffold_245-1510915933:157288..158336Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1491911889:159114..159419TCONS_00054800-exon-scaffold_245-1491911889:159114..159419Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1491911889:158554..158725TCONS_00054800-exon-scaffold_245-1491911889:158554..158725Clytia hemisphaericaexon
TCONS_00054800-exon-scaffold_245-1491911889:157288..158336TCONS_00054800-exon-scaffold_245-1491911889:157288..158336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:157288..159419 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.138429	0.110056	0.0699836	0	0	0.0304484	12.5783	14.8547	1.43678	2.09958	0.180746	0.296262	27.31	27.595	1.23728	1.19228	0.145054	0.238288	0.188363	0.153823	25.4397	11.9032	0.119507	0.103401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000867IGFBP-like
IPR009030Growth_fac_rcpt_
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0001558regulation of cell growth
Vocabulary: Molecular Function
TermDefinition
GO:0005520insulin-like growth factor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001558 regulation of cell growth
cellular_component GO:0005576 extracellular region
molecular_function GO:0005520 insulin-like growth factor binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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