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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054779 ID=TCONS_00054779|Name=TCONS_00054779|organism=Clytia hemisphaerica|type=transcript|length=2032bp
GGCTAAttaagcattttcatttgttttctagtgttcatttttgttttcaa
atgtttctttttttcctGTGAGAGATGTTTAATAACGTTTGATATCGTTT
AAAAATCGATGTGTTTGAATGAGATAATTTTCATTTGGCTCTCACTTGAT
TGGCGTGAAGACTGACTTCTGCAACAACTCTCAATAATTTTGCTGTTGGA
AGTTAGACTTAtagattttgatatttgaagAAGGTGCCTTAGATATGCGA
GGAATTATTGGACCATTGTTTGGCGCCCGATTGCCAAATGGGAGGACTGG
GTTGCGATAATATGACGGCTGTATTAGTTTGTCTTTTGAATGAACAATCC
TATGAGGAATTAGCTGAGAAATGCTCTACGCCAGTGCGACCAGAGATCTT
AGAGAAATATAATAGTGAACATGGTTCGGATACTGGTGTGGTCACACCTC
CTTCAACTGACGAACAAGAAGATAGTAAACCAAATGGAGAGGGAGAGGAA
GAAACACTCCCCtccaatgaagatgaagaacaGGAGAGTGGTCAAATGGA
CGAAGNAGGAGAGGAAGAAACACTTCCCtccaatgaagatgaagaacaGG
AGAGTGGTCAAATGGACgaagaagaaatgaatttaACGTAGTACGTTCGT
CCAATACTTTTTCGCTTCATGCAATCAACCAATCACTTAATTCTTCTTTG
GCGCCACTTGTTCAAAGGGCAGCTCGTTTAGATATGAATATTGTTTTAAA
AGCACTGTTATTATCGTGTATACTCCAAGTATATACCATGTTCCAAAAAA
ACTGTTCGTAATTTTGCATTGTTTCTTTAggaaaaaacatgtttttttat
tgataaattaATTCCCAATTAATAAATTTCTGTTTTATTTCATGTTAtaa
attatgtcatttttatactttttggtaAACATTTTCATATTGATTTTAAA
ACAATTACAAAACTTAAGTTTCTGCAGTTTCTTCAGTTGAGATGCTAGCT
GTGATCTCGTATTGCTCCAGATTCACCTCACAGAGTTTTACATTCAATCA
TCCAACAATACCATCTCGATAATTTTGTTAAAGCTCTTTGTTGATGTTTT
GTGTAATTTTCTCCTCATTCATGTTGACATAAAGAAATGAAAGTTGAGTG
ATTTTATTTGACTCTTGTGTTATATTATGTTGTCTACCCCTCTTTGATAA
GGTCTGTGGTCTGTATTTTATCATCTTTCAGATAGAGAAGTTCTTTTACG
TCAAAATAAACATTTCGGCGCTAAAACGTGATCAAATTTCcgattttttg
cactttttatATCTGTGACCTTTGTGCCTGCTATTTTATGAAATTACCCT
TTCCGATATCTCTGTTTTTCCAAATACAAAGACGATTATTTGATTACGAA
ATCACTCTGACATTGTAGATCGATATCTTTTACATTGATTTTCTAATGTG
TTTTGAAATCACGTCATTTCAATTGAATAAACTTTAATAATCATAAGAAA
GGAATTTGTGAGTGacaaacaattcaaaaatttagGGCTCTGGTTTTGAA
TCATACTATATGCCTTGTAAGCGGAGGATGTGTCAGAACATGGTCAGAAT
CAACTTAGAAAGTTTTGAAGTTGCCTGTACAAGTAAAAAGAATTAACCTG
GAAGAATTTTAAAAACACAGGGGTCTTTCCCTTCATCACAGAttgagaaa
tttcatttttttatcatttttttgaaactggTTATGACCCATACTATGTG
CCTCGTGATTTAAGGATATTTCAAATTCAGTTGCTATTAAGAAAATGACC
TTTAGGTTGATAAAACACCCCGCCGAGGAATTTTATGTAATTTCTTAATA
AATTAGTGAAAATGaggaaagaattttttaaaaaaactggttttgggtTA
TGCTATGTGCCTCGTACATTTAGGATGGTTCATAACTTGTTTACCAGGCG
GTTGAGTACCCCGTTGTGTGAAGAGGAACATTcccgaaaaagaaaaataa
attaactGGGTTTCTTTCATACTATGTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_245:468900..471433+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054779 ID=TCONS_00054779|Name=TCONS_00054779|organism=Clytia hemisphaerica|type=transcript|length=2534bp|location=Sequence derived from alignment at scaffold_245:468900..471433+ (Clytia hemisphaerica)
GGCTAAttaagcattttcatttgttttctagtgttcatttttgttttcaa
atgtttctttttttcctGTGAGAGATGTTTAATAACGTTTGATATCGTTT
AAAAATCGATGTGTTTGAATGAGATAATTTTCATTTGGCTCTCACTTGAT
TGGCGTGAAGACTGACTTCTGCAACAACTCTCAATAATTTTGCTGTTGGA
AGTTAGACTTAtagattttgatatttgaagAAGGTGCCTTAGGTATGCTC
GTATGTGCTTTACTTTTTTTAAGTATTGCTTAAGATGAATGgcagttttg
tttttgttttagtttccTCACGTCTGTCCATAACGCTGTTTTTCACTTAC
ACACTGTAAGAATGCTCCTTCAAGTATCGACTTTGTAGTCTTTGTTGCTA
CAGGCAACTAATAATTACAGTGCTAATAATAGCAATCTTGAAAGGAGGTA
TACTTAGACAGATCTCGATAAATTACGTTTCTATCTTAATTGTAATTAGA
TTATGAGATGATGAGAAAAATGTCTCCTTTCGTAAATTGTGCTAAGCTGC
AATCAGTGGACTGACACCACCGTCTCTTAtattgtttgtttacattttta
ccTGGACGGTGAAAACGTCATCCGAACGTTTCTGTAAACATTAATGCCTT
TAACTCCCCCGTCCTTCTTACCCCTATTTCCAGCATTACCTTTGCCAATG
TCAAAACAAACCCACATCTTTTGCTTTGTGTTGTCTTTCTACAGATATGC
GAGGAATTATTGGACCATTGTTTGGCGCCCGATTGCCAAATGGGAGGACT
GGGTTGCGATAATATGACGGCTGTATTAGTTTGTCTTTTGAATGAACAAT
CCTATGAGGAATTAGCTGAGAAATGCTCTACGCCAGTGCGACCAGAGATC
TTAGAGAAATATAATAGTGAACATGGTTCGGATACTGGTGTGGTCACACC
TCCTTCAACTGACGAACAAGAAGATAGTAAACCAAATGGAGAGGGAGAGG
AAGAAACACTCCCCtccaatgaagatgaagaacaGGAGAGTGGTCAAATG
GACGAAGNAGGAGAGGAAGAAACACTTCCCtccaatgaagatgaagaaca
GGAGAGTGGTCAAATGGACgaagaagaaatgaatttaACGTAGTACGTTC
GTCCAATACTTTTTCGCTTCATGCAATCAACCAATCACTTAATTCTTCTT
TGGCGCCACTTGTTCAAAGGGCAGCTCGTTTAGATATGAATATTGTTTTA
AAAGCACTGTTATTATCGTGTATACTCCAAGTATATACCATGTTCCAAAA
AAACTGTTCGTAATTTTGCATTGTTTCTTTAggaaaaaacatgttttttt
attgataaattaATTCCCAATTAATAAATTTCTGTTTTATTTCATGTTAt
aaattatgtcatttttatactttttggtaAACATTTTCATATTGATTTTA
AAACAATTACAAAACTTAAGTTTCTGCAGTTTCTTCAGTTGAGATGCTAG
CTGTGATCTCGTATTGCTCCAGATTCACCTCACAGAGTTTTACATTCAAT
CATCCAACAATACCATCTCGATAATTTTGTTAAAGCTCTTTGTTGATGTT
TTGTGTAATTTTCTCCTCATTCATGTTGACATAAAGAAATGAAAGTTGAG
TGATTTTATTTGACTCTTGTGTTATATTATGTTGTCTACCCCTCTTTGAT
AAGGTCTGTGGTCTGTATTTTATCATCTTTCAGATAGAGAAGTTCTTTTA
CGTCAAAATAAACATTTCGGCGCTAAAACGTGATCAAATTTCcgattttt
tgcactttttatATCTGTGACCTTTGTGCCTGCTATTTTATGAAATTACC
CTTTCCGATATCTCTGTTTTTCCAAATACAAAGACGATTATTTGATTACG
AAATCACTCTGACATTGTAGATCGATATCTTTTACATTGATTTTCTAATG
TGTTTTGAAATCACGTCATTTCAATTGAATAAACTTTAATAATCATAAGA
AAGGAATTTGTGAGTGacaaacaattcaaaaatttagGGCTCTGGTTTTG
AATCATACTATATGCCTTGTAAGCGGAGGATGTGTCAGAACATGGTCAGA
ATCAACTTAGAAAGTTTTGAAGTTGCCTGTACAAGTAAAAAGAATTAACC
TGGAAGAATTTTAAAAACACAGGGGTCTTTCCCTTCATCACAGAttgaga
aatttcatttttttatcatttttttgaaactggTTATGACCCATACTATG
TGCCTCGTGATTTAAGGATATTTCAAATTCAGTTGCTATTAAGAAAATGA
CCTTTAGGTTGATAAAACACCCCGCCGAGGAATTTTATGTAATTTCTTAA
TAAATTAGTGAAAATGaggaaagaattttttaaaaaaactggttttgggt
TATGCTATGTGCCTCGTACATTTAGGATGGTTCATAACTTGTTTACCAGG
CGGTTGAGTACCCCGTTGTGTGAAGAGGAACATTcccgaaaaagaaaaat
aaattaactGGGTTTCTTTCATACTATGTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054779-exon-scaffold_245-1491911889:468900..469141 | TCONS_00054779-exon-scaffold_245-1491911889:468900..469141 | Clytia hemisphaerica | exon |
| TCONS_00054779-exon-scaffold_245-1510915933:468900..469141 | TCONS_00054779-exon-scaffold_245-1510915933:468900..469141 | Clytia hemisphaerica | exon |
| TCONS_00054779-exon-scaffold_245-1575043694:468900..469141 | TCONS_00054779-exon-scaffold_245-1575043694:468900..469141 | Clytia hemisphaerica | exon |
| TCONS_00054779-exon-scaffold_245-1491911889:469644..471433 | TCONS_00054779-exon-scaffold_245-1491911889:469644..471433 | Clytia hemisphaerica | exon |
| TCONS_00054779-exon-scaffold_245-1510915933:469644..471433 | TCONS_00054779-exon-scaffold_245-1510915933:469644..471433 | Clytia hemisphaerica | exon |
| TCONS_00054779-exon-scaffold_245-1575043694:469644..471433 | TCONS_00054779-exon-scaffold_245-1575043694:469644..471433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:468900..471433 + |
Blast
The following BLAST results are available for this feature:
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